ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 753 |
| AatII | GACGTC | 1 cut(s) | 1005 |
| AccIII | TCCGGA | 1 cut(s) | 70 |
| AciI | CCGC | 5 cut(s) | 422, 849, 852, 942, 1008 |
| AclWI | GGATC | 2 cut(s) | 62, 890 |
| AcsI | RAATTY | 1 cut(s) | 256 |
| AcyI | GRCGYC | 1 cut(s) | 1002 |
| AfaI | GTAC | 4 cut(s) | 38, 162, 494, 959 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 815, 897 |
| AgsI | TTSAA | 8 cut(s) | 121, 133, 233, 387, 449, 626, 655, 1017 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 273, 305 |
| AluBI | AGCT | 1 cut(s) | 757 |
| AluI | AGCT | 1 cut(s) | 757 |
| Alw21I | GWGCWC | 1 cut(s) | 490 |
| Alw26I | GTCTC | 4 cut(s) | 257, 718, 860, 892 |
| Alw44I | GTGCAC | 1 cut(s) | 486 |
| AlwI | GGATC | 2 cut(s) | 62, 890 |
| Aor13HI | TCCGGA | 1 cut(s) | 70 |
| ApaLI | GTGCAC | 1 cut(s) | 486 |
| ApeKI | GCWGC | 2 cut(s) | 700, 947 |
| ApoI | RAATTY | 1 cut(s) | 256 |
| AseI | ATTAAT | 1 cut(s) | 663 |
| AspLEI | GCGC | 1 cut(s) | 947 |
| AspS9I | GGNCC | 2 cut(s) | 155, 330 |
| AsuC2I | CCSGG | 1 cut(s) | 980 |
| AsuHPI | GGTGA | 1 cut(s) | 382 |
| AvaII | GGWCC | 2 cut(s) | 155, 330 |
| AxyI | CCTNAGG | 1 cut(s) | 705 |
| BaeGI | GKGCMC | 1 cut(s) | 490 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 595, 627 |
| Bbv12I | GWGCWC | 1 cut(s) | 490 |
| BbvI | GCAGC | 2 cut(s) | 712, 934 |
| BccI | CCATC | 1 cut(s) | 551 |
| BceAI | ACGGC | 3 cut(s) | 312, 372, 955 |
| BciVI | GTATCC | 1 cut(s) | 543 |
| BcnI | CCSGG | 1 cut(s) | 980 |
| BcoDI | GTCTC | 4 cut(s) | 257, 718, 860, 892 |
| BfaI | CTAG | 5 cut(s) | 44, 327, 549, 815, 920 |
| BfoI | RGCGCY | 1 cut(s) | 948 |
| BfuI | GTATCC | 1 cut(s) | 543 |
| BisI | GCNGC | 4 cut(s) | 701, 850, 943, 948 |
| BlsI | GCNGC | 4 cut(s) | 702, 851, 944, 949 |
| Bme1390I | CCNGG | 1 cut(s) | 980 |
| Bme18I | GGWCC | 2 cut(s) | 155, 330 |
| BmgT120I | GGNCC | 2 cut(s) | 155, 330 |
| BmrFI | CCNGG | 1 cut(s) | 980 |
| BmrI | ACTGGG | 1 cut(s) | 598 |
| BmsI | GCATC | 1 cut(s) | 184 |
| BmuI | ACTGGG | 1 cut(s) | 598 |
| BpuEI | CTTGAG | 1 cut(s) | 742 |
| BpuMI | CCSGG | 1 cut(s) | 980 |
| BsaBI | GATNNNNATC | 1 cut(s) | 471 |
| BsaHI | GRCGYC | 1 cut(s) | 1002 |
| BsaI | GGTCTC | 2 cut(s) | 718, 860 |
| BsaJI | CCNNGG | 2 cut(s) | 98, 937 |
| BsaWI | WCCGGW | 1 cut(s) | 70 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 915, 945 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 815, 897 |
| Bse1I | ACTGG | 2 cut(s) | 138, 593 |
| Bse21I | CCTNAGG | 1 cut(s) | 705 |
| Bse3DI | GCAATG | 1 cut(s) | 748 |
| Bse8I | GATNNNNATC | 1 cut(s) | 471 |
| BseAI | TCCGGA | 1 cut(s) | 70 |
| BseDI | CCNNGG | 2 cut(s) | 98, 937 |
| BseJI | GATNNNNATC | 1 cut(s) | 471 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 815, 897 |
| BseMI | GCAATG | 1 cut(s) | 748 |
| BseMII | CTCAG | 4 cut(s) | 263, 489, 606, 696 |
| BseNI | ACTGG | 2 cut(s) | 138, 593 |
| BseRI | GAGGAG | 3 cut(s) | 515, 880, 923 |
| BseSI | GKGCMC | 1 cut(s) | 490 |
| BseXI | GCAGC | 2 cut(s) | 712, 934 |
| Bsh1285I | CGRYCG | 1 cut(s) | 984 |
| BsiEI | CGRYCG | 1 cut(s) | 984 |
| BsiHKAI | GWGCWC | 1 cut(s) | 490 |
| BsiSI | CCGG | 4 cut(s) | 71, 796, 859, 980 |
| BslFI | GGGAC | 2 cut(s) | 731, 889 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 815, 897 |
| BsmAI | GTCTC | 4 cut(s) | 257, 718, 860, 892 |
| BsmBI | CGTCTC | 1 cut(s) | 892 |
| BsmFI | GGGAC | 2 cut(s) | 731, 889 |
| BsmI | GAATGC | 1 cut(s) | 567 |
| Bso31I | GGTCTC | 2 cut(s) | 718, 860 |
| Bsp1286I | GDGCHC | 1 cut(s) | 490 |
| Bsp13I | TCCGGA | 1 cut(s) | 70 |
| Bsp143I | GATC | 4 cut(s) | 67, 211, 644, 882 |
| BspACI | CCGC | 5 cut(s) | 422, 849, 852, 942, 1008 |
| BspCNI | CTCAG | 4 cut(s) | 264, 490, 607, 697 |
| BspEI | TCCGGA | 1 cut(s) | 70 |
| BspPI | GGATC | 2 cut(s) | 62, 890 |
| BspTNI | GGTCTC | 2 cut(s) | 718, 860 |
| BsrDI | GCAATG | 1 cut(s) | 748 |
| BsrI | ACTGG | 2 cut(s) | 138, 593 |
| BssECI | CCNNGG | 2 cut(s) | 98, 937 |
| BssMI | GATC | 4 cut(s) | 67, 211, 644, 882 |
| BssNI | GRCGYC | 1 cut(s) | 1002 |
| BssT1I | CCWWGG | 1 cut(s) | 98 |
| Bst4CI | ACNGT | 3 cut(s) | 480, 492, 962 |
| Bst6I | CTCTTC | 1 cut(s) | 598 |
| BstACI | GRCGYC | 1 cut(s) | 1002 |
| BstDEI | CTNAG | 4 cut(s) | 272, 498, 615, 705 |
| BstDSI | CCRYGG | 1 cut(s) | 937 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 813 |
| BstH2I | RGCGCY | 1 cut(s) | 948 |
| BstHHI | GCGC | 1 cut(s) | 947 |
| BstKTI | GATC | 4 cut(s) | 70, 214, 647, 885 |
| BstMAI | GTCTC | 4 cut(s) | 257, 718, 860, 892 |
| BstMBI | GATC | 4 cut(s) | 67, 211, 644, 882 |
| BstMCI | CGRYCG | 1 cut(s) | 984 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 413 |
| BstSCI | CCNGG | 1 cut(s) | 978 |
| BstSLI | GKGCMC | 1 cut(s) | 490 |
| BstV1I | GCAGC | 2 cut(s) | 712, 934 |
| Bsu36I | CCTNAGG | 1 cut(s) | 705 |
| BsuI | GTATCC | 1 cut(s) | 543 |
| BtgI | CCRYGG | 1 cut(s) | 937 |
| BtsIMutI | CAGTG | 2 cut(s) | 145, 495 |
| CfoI | GCGC | 1 cut(s) | 947 |
| Cfr13I | GGNCC | 2 cut(s) | 155, 330 |
| CseI | GACGC | 1 cut(s) | 161 |
| Csp6I | GTAC | 4 cut(s) | 37, 161, 493, 958 |
| CviAII | CATG | 3 cut(s) | 58, 249, 360 |
| CviQI | GTAC | 4 cut(s) | 37, 161, 493, 958 |
| DdeI | CTNAG | 4 cut(s) | 272, 498, 615, 705 |
| DpnI | GATC | 4 cut(s) | 69, 213, 646, 884 |
| DpnII | GATC | 4 cut(s) | 67, 211, 644, 882 |
| Eam1104I | CTCTTC | 1 cut(s) | 598 |
| EarI | CTCTTC | 1 cut(s) | 598 |
| Eco130I | CCWWGG | 1 cut(s) | 98 |
| Eco31I | GGTCTC | 2 cut(s) | 718, 860 |
| Eco47I | GGWCC | 2 cut(s) | 155, 330 |
| Eco81I | CCTNAGG | 1 cut(s) | 705 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 813 |
| EcoRI | GAATTC | 1 cut(s) | 256 |
| EcoT14I | CCWWGG | 1 cut(s) | 98 |
| ErhI | CCWWGG | 1 cut(s) | 98 |
| Esp3I | CGTCTC | 1 cut(s) | 892 |
| FaeI | CATG | 3 cut(s) | 61, 252, 363 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 746, 778 |
| FaqI | GGGAC | 2 cut(s) | 731, 889 |
| FatI | CATG | 3 cut(s) | 57, 248, 359 |
| FauI | CCCGC | 1 cut(s) | 1001 |
| Fnu4HI | GCNGC | 4 cut(s) | 701, 850, 943, 948 |
| Fsp4HI | GCNGC | 4 cut(s) | 701, 850, 943, 948 |
| FspBI | CTAG | 5 cut(s) | 44, 327, 549, 815, 920 |
| GlaI | GCGC | 1 cut(s) | 946 |
| GluI | GCNGC | 4 cut(s) | 701, 850, 943, 948 |
| HaeII | RGCGCY | 1 cut(s) | 948 |
| HapII | CCGG | 4 cut(s) | 71, 796, 859, 980 |
| HgaI | GACGC | 1 cut(s) | 161 |
| HhaI | GCGC | 1 cut(s) | 947 |
| Hin1I | GRCGYC | 1 cut(s) | 1002 |
| Hin1II | CATG | 3 cut(s) | 61, 252, 363 |
| Hin6I | GCGC | 1 cut(s) | 945 |
| HinP1I | GCGC | 1 cut(s) | 945 |
| HinfI | GANTC | 8 cut(s) | 265, 472, 593, 685, 783, 802, 822, 928 |
| HpaII | CCGG | 4 cut(s) | 71, 796, 859, 980 |
| HphI | GGTGA | 1 cut(s) | 382 |
| Hpy166II | GTNNAC | 3 cut(s) | 396, 488, 495 |
| Hpy188I | TCNGA | 4 cut(s) | 262, 976, 986, 1000 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 167, 554, 875 |
| Hpy8I | GTNNAC | 3 cut(s) | 396, 488, 495 |
| Hpy99I | CGWCG | 1 cut(s) | 1007 |
| HpyAV | CCTTC | 1 cut(s) | 358 |
| HpyCH4III | ACNGT | 3 cut(s) | 480, 492, 962 |
| HpyCH4IV | ACGT | 2 cut(s) | 163, 1002 |
| HpyCH4V | TGCA | 6 cut(s) | 239, 416, 488, 637, 741, 950 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 413 |
| HpyF3I | CTNAG | 4 cut(s) | 272, 498, 615, 705 |
| HpySE526I | ACGT | 2 cut(s) | 163, 1002 |
| Hsp92I | GRCGYC | 1 cut(s) | 1002 |
| Hsp92II | CATG | 3 cut(s) | 61, 252, 363 |
| HspAI | GCGC | 1 cut(s) | 945 |
| Kpn2I | TCCGGA | 1 cut(s) | 70 |
| Kzo9I | GATC | 4 cut(s) | 67, 211, 644, 882 |
| Lsp1109I | GCAGC | 2 cut(s) | 712, 934 |
| LweI | GCATC | 1 cut(s) | 184 |
| MaeI | CTAG | 5 cut(s) | 44, 327, 549, 815, 920 |
| MaeII | ACGT | 2 cut(s) | 163, 1002 |
| MaeIII | GTNAC | 3 cut(s) | 370, 457, 610 |
| MalI | GATC | 4 cut(s) | 69, 213, 646, 884 |
| MboI | GATC | 4 cut(s) | 67, 211, 644, 882 |
| MboII | GAAGA | 1 cut(s) | 615 |
| MhlI | GDGCHC | 1 cut(s) | 490 |
| MluCI | AATT | 6 cut(s) | 146, 256, 444, 660, 664, 771 |
| MlyI | GAGTC | 3 cut(s) | 259, 602, 796 |
| MmeI | TCCRAC | 3 cut(s) | 560, 604, 964 |
| MroI | TCCGGA | 1 cut(s) | 70 |
| MseI | TTAA | 4 cut(s) | 149, 411, 663, 765 |
| MslI | CAYNNNNRTG | 1 cut(s) | 676 |
| MspI | CCGG | 4 cut(s) | 71, 796, 859, 980 |
| MspR9I | CCNGG | 1 cut(s) | 980 |
| Mva1269I | GAATGC | 1 cut(s) | 567 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 413 |
| NciI | CCSGG | 1 cut(s) | 980 |
| NdeII | GATC | 4 cut(s) | 67, 211, 644, 882 |
| NlaIII | CATG | 3 cut(s) | 61, 252, 363 |
| NmuCI | GTSAC | 1 cut(s) | 370 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 169 |
| PctI | GAATGC | 1 cut(s) | 567 |
| PfeI | GAWTC | 5 cut(s) | 472, 685, 783, 822, 928 |
| PflFI | GACNNNGTC | 1 cut(s) | 980 |
| PkrI | GCNGC | 4 cut(s) | 702, 851, 944, 949 |
| PleI | GAGTC | 3 cut(s) | 259, 601, 796 |
| PpsI | GAGTC | 3 cut(s) | 259, 601, 796 |
| PshBI | ATTAAT | 1 cut(s) | 663 |
| PsiI | TTATAA | 1 cut(s) | 753 |
| PspPI | GGNCC | 2 cut(s) | 155, 330 |
| PsyI | GACNNNGTC | 1 cut(s) | 980 |
| RsaI | GTAC | 4 cut(s) | 38, 162, 494, 959 |
| RsaNI | GTAC | 4 cut(s) | 37, 161, 493, 958 |
| RseI | CAYNNNNRTG | 1 cut(s) | 676 |
| SaqAI | TTAA | 4 cut(s) | 149, 411, 663, 765 |
| SatI | GCNGC | 4 cut(s) | 701, 850, 943, 948 |
| Sau3AI | GATC | 4 cut(s) | 67, 211, 644, 882 |
| Sau96I | GGNCC | 2 cut(s) | 155, 330 |
| SchI | GAGTC | 3 cut(s) | 259, 602, 796 |
| ScrFI | CCNGG | 1 cut(s) | 980 |
| SduI | GDGCHC | 1 cut(s) | 490 |
| SfaNI | GCATC | 1 cut(s) | 184 |
| SinI | GGWCC | 2 cut(s) | 155, 330 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 676 |
| SmlI | CTYRAG | 1 cut(s) | 721 |
| SmoI | CTYRAG | 1 cut(s) | 721 |
| Sse9I | AATT | 6 cut(s) | 146, 256, 444, 660, 664, 771 |
| SsiI | CCGC | 5 cut(s) | 422, 849, 852, 942, 1008 |
| SspMI | CTAG | 5 cut(s) | 44, 327, 549, 815, 920 |
| StyD4I | CCNGG | 1 cut(s) | 978 |
| StyI | CCWWGG | 1 cut(s) | 98 |
| TaaI | ACNGT | 3 cut(s) | 480, 492, 962 |
| TaiI | ACGT | 2 cut(s) | 166, 1005 |
| TaqI | TCGA | 4 cut(s) | 318, 786, 805, 825 |
| TaqII | GACCGA | 1 cut(s) | 347 |
| TasI | AATT | 6 cut(s) | 146, 256, 444, 660, 664, 771 |
| TauI | GCSGC | 2 cut(s) | 852, 945 |
| TfiI | GAWTC | 5 cut(s) | 472, 685, 783, 822, 928 |
| Tru1I | TTAA | 4 cut(s) | 149, 411, 663, 765 |
| Tru9I | TTAA | 4 cut(s) | 149, 411, 663, 765 |
| TscAI | CASTG | 2 cut(s) | 145, 502 |
| TseFI | GTSAC | 1 cut(s) | 370 |
| TseI | GCWGC | 2 cut(s) | 700, 947 |
| Tsp45I | GTSAC | 1 cut(s) | 370 |
| TspDTI | ATGAA | 1 cut(s) | 485 |
| TspGWI | ACGGA | 1 cut(s) | 558 |
| TspRI | CASTG | 2 cut(s) | 145, 502 |
| Tth111I | GACNNNGTC | 1 cut(s) | 980 |
| VneI | GTGCAC | 1 cut(s) | 486 |
| VpaK11BI | GGWCC | 2 cut(s) | 155, 330 |
| VspI | ATTAAT | 1 cut(s) | 663 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 813 |
| XapI | RAATTY | 1 cut(s) | 256 |
| XspI | CTAG | 5 cut(s) | 44, 327, 549, 815, 920 |
| ZraI | GACGTC | 1 cut(s) | 1003 |