ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AciI | CCGC | 1 cut(s) | 647 |
| AclWI | GGATC | 3 cut(s) | 372, 631, 669 |
| AcoI | YGGCCR | 1 cut(s) | 622 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 48, 631, 802, 803 |
| AflIII | ACRYGT | 1 cut(s) | 6 |
| AgsI | TTSAA | 4 cut(s) | 107, 136, 737, 751 |
| AjnI | CCWGG | 1 cut(s) | 359 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 563, 595 |
| AluBI | AGCT | 1 cut(s) | 451 |
| AluI | AGCT | 1 cut(s) | 451 |
| Alw21I | GWGCWC | 1 cut(s) | 58 |
| Alw26I | GTCTC | 1 cut(s) | 285 |
| AlwI | GGATC | 3 cut(s) | 372, 631, 669 |
| AoxI | GGCC | 2 cut(s) | 438, 622 |
| ApeKI | GCWGC | 2 cut(s) | 247, 341 |
| AspA2I | CCTAGG | 1 cut(s) | 154 |
| AspLEI | GCGC | 1 cut(s) | 502 |
| AspS9I | GGNCC | 1 cut(s) | 523 |
| AsuHPI | GGTGA | 1 cut(s) | 646 |
| AvaII | GGWCC | 1 cut(s) | 523 |
| AvrII | CCTAGG | 1 cut(s) | 154 |
| Bbv12I | GWGCWC | 1 cut(s) | 58 |
| BbvI | GCAGC | 2 cut(s) | 259, 353 |
| BccI | CCATC | 2 cut(s) | 449, 648 |
| BceAI | ACGGC | 3 cut(s) | 260, 310, 343 |
| BciT130I | CCWGG | 1 cut(s) | 361 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcoDI | GTCTC | 1 cut(s) | 285 |
| BfaI | CTAG | 5 cut(s) | 48, 155, 318, 651, 840 |
| BfoI | RGCGCY | 1 cut(s) | 503 |
| BisI | GCNGC | 3 cut(s) | 248, 342, 647 |
| BlnI | CCTAGG | 1 cut(s) | 154 |
| BlsI | GCNGC | 3 cut(s) | 249, 343, 648 |
| Bme1390I | CCNGG | 1 cut(s) | 361 |
| Bme18I | GGWCC | 1 cut(s) | 523 |
| BmgT120I | GGNCC | 1 cut(s) | 523 |
| BmrFI | CCNGG | 1 cut(s) | 361 |
| BmrI | ACTGGG | 1 cut(s) | 215 |
| BmsI | GCATC | 2 cut(s) | 262, 530 |
| BmuI | ACTGGG | 1 cut(s) | 215 |
| Bsa29I | ATCGAT | 1 cut(s) | 740 |
| BsaJI | CCNNGG | 5 cut(s) | 154, 360, 401, 441, 526 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 48, 631, 802, 803 |
| Bse1I | ACTGG | 3 cut(s) | 210, 522, 846 |
| BseBI | CCWGG | 1 cut(s) | 361 |
| BseCI | ATCGAT | 1 cut(s) | 740 |
| BseDI | CCNNGG | 5 cut(s) | 154, 360, 401, 441, 526 |
| BseGI | GGATG | 2 cut(s) | 460, 545 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 48, 631, 802, 803 |
| BseNI | ACTGG | 3 cut(s) | 210, 522, 846 |
| BseRI | GAGGAG | 1 cut(s) | 143 |
| BseXI | GCAGC | 2 cut(s) | 259, 353 |
| BseYI | CCCAGC | 2 cut(s) | 412, 502 |
| BsgI | GTGCAG | 2 cut(s) | 360, 892 |
| BshFI | GGCC | 2 cut(s) | 440, 624 |
| BshVI | ATCGAT | 1 cut(s) | 740 |
| BsiHKAI | GWGCWC | 1 cut(s) | 58 |
| BslFI | GGGAC | 1 cut(s) | 216 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 48, 631, 802, 803 |
| BsmAI | GTCTC | 1 cut(s) | 285 |
| BsmBI | CGTCTC | 1 cut(s) | 285 |
| BsmFI | GGGAC | 1 cut(s) | 216 |
| BsnI | GGCC | 2 cut(s) | 440, 624 |
| Bsp1286I | GDGCHC | 1 cut(s) | 58 |
| Bsp143I | GATC | 7 cut(s) | 163, 234, 346, 364, 636, 661, 771 |
| BspACI | CCGC | 1 cut(s) | 647 |
| BspANI | GGCC | 2 cut(s) | 440, 624 |
| BspDI | ATCGAT | 1 cut(s) | 740 |
| BspHI | TCATGA | 1 cut(s) | 352 |
| BspPI | GGATC | 3 cut(s) | 372, 631, 669 |
| BsrI | ACTGG | 3 cut(s) | 210, 522, 846 |
| BssECI | CCNNGG | 5 cut(s) | 154, 360, 401, 441, 526 |
| BssMI | GATC | 7 cut(s) | 163, 234, 346, 364, 636, 661, 771 |
| BssT1I | CCWWGG | 3 cut(s) | 154, 441, 526 |
| Bst2UI | CCWGG | 1 cut(s) | 361 |
| Bst4CI | ACNGT | 3 cut(s) | 395, 402, 890 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstDSI | CCRYGG | 1 cut(s) | 401 |
| BstEII | GGTNACC | 1 cut(s) | 884 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 46 |
| BstF5I | GGATG | 2 cut(s) | 460, 545 |
| BstH2I | RGCGCY | 1 cut(s) | 503 |
| BstHHI | GCGC | 1 cut(s) | 502 |
| BstKTI | GATC | 7 cut(s) | 166, 237, 349, 367, 639, 664, 774 |
| BstMAI | GTCTC | 1 cut(s) | 285 |
| BstMBI | GATC | 7 cut(s) | 163, 234, 346, 364, 636, 661, 771 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 787 |
| BstNI | CCWGG | 1 cut(s) | 361 |
| BstPI | GGTNACC | 1 cut(s) | 884 |
| BstSCI | CCNGG | 1 cut(s) | 359 |
| BstV1I | GCAGC | 2 cut(s) | 259, 353 |
| BstX2I | RGATCY | 1 cut(s) | 364 |
| BstYI | RGATCY | 1 cut(s) | 364 |
| Bsu15I | ATCGAT | 1 cut(s) | 740 |
| BsuRI | GGCC | 2 cut(s) | 440, 624 |
| BsuTUI | ATCGAT | 1 cut(s) | 740 |
| BtgI | CCRYGG | 1 cut(s) | 401 |
| BtsCI | GGATG | 2 cut(s) | 460, 545 |
| BtsI | GCAGTG | 3 cut(s) | 282, 875, 880 |
| BtsIMutI | CAGTG | 4 cut(s) | 282, 694, 875, 880 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| CciI | TCATGA | 1 cut(s) | 352 |
| CfoI | GCGC | 1 cut(s) | 502 |
| Cfr13I | GGNCC | 1 cut(s) | 523 |
| ClaI | ATCGAT | 1 cut(s) | 740 |
| CviAII | CATG | 5 cut(s) | 167, 353, 470, 755, 767 |
| CviJI | RGCY | 6 cut(s) | 85, 250, 297, 440, 451, 624 |
| CviKI_1 | RGCY | 6 cut(s) | 85, 250, 297, 440, 451, 624 |
| DpnI | GATC | 7 cut(s) | 165, 236, 348, 366, 638, 663, 773 |
| DpnII | GATC | 7 cut(s) | 163, 234, 346, 364, 636, 661, 771 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| EaeI | YGGCCR | 1 cut(s) | 622 |
| Eco130I | CCWWGG | 3 cut(s) | 154, 441, 526 |
| Eco32I | GATATC | 1 cut(s) | 719 |
| Eco47I | GGWCC | 1 cut(s) | 523 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| Eco91I | GGTNACC | 1 cut(s) | 884 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 46 |
| EcoO65I | GGTNACC | 1 cut(s) | 884 |
| EcoRII | CCWGG | 1 cut(s) | 359 |
| EcoRV | GATATC | 1 cut(s) | 719 |
| EcoT14I | CCWWGG | 3 cut(s) | 154, 441, 526 |
| ErhI | CCWWGG | 3 cut(s) | 154, 441, 526 |
| Esp3I | CGTCTC | 1 cut(s) | 285 |
| FaeI | CATG | 5 cut(s) | 170, 356, 473, 758, 770 |
| FaqI | GGGAC | 1 cut(s) | 216 |
| FatI | CATG | 5 cut(s) | 166, 352, 469, 754, 766 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| Fnu4HI | GCNGC | 3 cut(s) | 248, 342, 647 |
| FokI | GGATG | 2 cut(s) | 467, 552 |
| Fsp4HI | GCNGC | 3 cut(s) | 248, 342, 647 |
| FspBI | CTAG | 5 cut(s) | 48, 155, 318, 651, 840 |
| GlaI | GCGC | 1 cut(s) | 501 |
| GluI | GCNGC | 3 cut(s) | 248, 342, 647 |
| GsaI | CCCAGC | 2 cut(s) | 416, 506 |
| HaeII | RGCGCY | 1 cut(s) | 503 |
| HaeIII | GGCC | 2 cut(s) | 440, 624 |
| HhaI | GCGC | 1 cut(s) | 502 |
| Hin1II | CATG | 5 cut(s) | 170, 356, 473, 758, 770 |
| Hin6I | GCGC | 1 cut(s) | 500 |
| HinP1I | GCGC | 1 cut(s) | 500 |
| HinfI | GANTC | 3 cut(s) | 356, 560, 737 |
| HphI | GGTGA | 1 cut(s) | 646 |
| Hpy166II | GTNNAC | 3 cut(s) | 398, 523, 549 |
| Hpy188I | TCNGA | 6 cut(s) | 60, 102, 119, 494, 565, 661 |
| Hpy188III | TCNNGA | 2 cut(s) | 16, 353 |
| Hpy8I | GTNNAC | 3 cut(s) | 398, 523, 549 |
| Hpy99I | CGWCG | 1 cut(s) | 604 |
| HpyAV | CCTTC | 4 cut(s) | 167, 261, 281, 565 |
| HpyCH4III | ACNGT | 3 cut(s) | 395, 402, 890 |
| HpyCH4IV | ACGT | 2 cut(s) | 6, 148 |
| HpyCH4V | TGCA | 6 cut(s) | 170, 275, 341, 692, 854, 873 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 787 |
| HpySE526I | ACGT | 2 cut(s) | 6, 148 |
| Hsp92II | CATG | 5 cut(s) | 170, 356, 473, 758, 770 |
| HspAI | GCGC | 1 cut(s) | 500 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| Kzo9I | GATC | 7 cut(s) | 163, 234, 346, 364, 636, 661, 771 |
| Lsp1109I | GCAGC | 2 cut(s) | 259, 353 |
| LweI | GCATC | 2 cut(s) | 262, 530 |
| MaeI | CTAG | 5 cut(s) | 48, 155, 318, 651, 840 |
| MaeII | ACGT | 2 cut(s) | 6, 148 |
| MaeIII | GTNAC | 3 cut(s) | 72, 149, 884 |
| MalI | GATC | 7 cut(s) | 165, 236, 348, 366, 638, 663, 773 |
| MboI | GATC | 7 cut(s) | 163, 234, 346, 364, 636, 661, 771 |
| MboII | GAAGA | 4 cut(s) | 73, 359, 362, 844 |
| MflI | RGATCY | 1 cut(s) | 364 |
| MhlI | GDGCHC | 1 cut(s) | 58 |
| MluCI | AATT | 5 cut(s) | 19, 89, 331, 672, 693 |
| MlyI | GAGTC | 1 cut(s) | 365 |
| MmeI | TCCRAC | 2 cut(s) | 561, 639 |
| MnlI | CCTC | 8 cut(s) | 52, 121, 479, 490, 505, 600, 717, 751 |
| MseI | TTAA | 4 cut(s) | 68, 231, 423, 729 |
| MspR9I | CCNGG | 1 cut(s) | 361 |
| MvaI | CCWGG | 1 cut(s) | 361 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 787 |
| NdeII | GATC | 7 cut(s) | 163, 234, 346, 364, 636, 661, 771 |
| NlaIII | CATG | 5 cut(s) | 170, 356, 473, 758, 770 |
| NmuCI | GTSAC | 2 cut(s) | 72, 884 |
| PagI | TCATGA | 1 cut(s) | 352 |
| PfeI | GAWTC | 2 cut(s) | 560, 737 |
| PkrI | GCNGC | 3 cut(s) | 249, 343, 648 |
| PleI | GAGTC | 1 cut(s) | 364 |
| PpsI | GAGTC | 1 cut(s) | 364 |
| Psp6I | CCWGG | 1 cut(s) | 359 |
| PspEI | GGTNACC | 1 cut(s) | 884 |
| PspFI | CCCAGC | 2 cut(s) | 412, 502 |
| PspGI | CCWGG | 1 cut(s) | 359 |
| PspPI | GGNCC | 1 cut(s) | 523 |
| PsuI | RGATCY | 1 cut(s) | 364 |
| SaqAI | TTAA | 4 cut(s) | 68, 231, 423, 729 |
| SatI | GCNGC | 3 cut(s) | 248, 342, 647 |
| Sau3AI | GATC | 7 cut(s) | 163, 234, 346, 364, 636, 661, 771 |
| Sau96I | GGNCC | 1 cut(s) | 523 |
| SchI | GAGTC | 1 cut(s) | 365 |
| ScrFI | CCNGG | 1 cut(s) | 361 |
| SduI | GDGCHC | 1 cut(s) | 58 |
| SfaNI | GCATC | 2 cut(s) | 262, 530 |
| SinI | GGWCC | 1 cut(s) | 523 |
| Sse9I | AATT | 5 cut(s) | 19, 89, 331, 672, 693 |
| SsiI | CCGC | 1 cut(s) | 647 |
| SspMI | CTAG | 5 cut(s) | 48, 155, 318, 651, 840 |
| StyD4I | CCNGG | 1 cut(s) | 359 |
| StyI | CCWWGG | 3 cut(s) | 154, 441, 526 |
| TaaI | ACNGT | 3 cut(s) | 395, 402, 890 |
| TaiI | ACGT | 2 cut(s) | 9, 151 |
| TaqI | TCGA | 1 cut(s) | 740 |
| TasI | AATT | 5 cut(s) | 19, 89, 331, 672, 693 |
| TauI | GCSGC | 1 cut(s) | 649 |
| TfiI | GAWTC | 2 cut(s) | 560, 737 |
| Tru1I | TTAA | 4 cut(s) | 68, 231, 423, 729 |
| Tru9I | TTAA | 4 cut(s) | 68, 231, 423, 729 |
| TscAI | CASTG | 4 cut(s) | 282, 694, 875, 880 |
| TseFI | GTSAC | 2 cut(s) | 72, 884 |
| TseI | GCWGC | 2 cut(s) | 247, 341 |
| Tsp45I | GTSAC | 2 cut(s) | 72, 884 |
| TspDTI | ATGAA | 5 cut(s) | 17, 300, 441, 486, 584 |
| TspGWI | ACGGA | 2 cut(s) | 552, 617 |
| TspRI | CASTG | 4 cut(s) | 282, 694, 875, 880 |
| VpaK11BI | GGWCC | 1 cut(s) | 523 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 46 |
| XmaJI | CCTAGG | 1 cut(s) | 154 |
| XspI | CTAG | 5 cut(s) | 48, 155, 318, 651, 840 |