Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 437 |
| AciI | CCGC | 2 cut(s) | 170, 344 |
| AclWI | GGATC | 1 cut(s) | 44 |
| AcsI | RAATTY | 3 cut(s) | 265, 318, 448 |
| AcuI | CTGAAG | 1 cut(s) | 86 |
| AfaI | GTAC | 1 cut(s) | 487 |
| AgsI | TTSAA | 2 cut(s) | 177, 313 |
| AjnI | CCWGG | 1 cut(s) | 290 |
| AluBI | AGCT | 2 cut(s) | 389, 579 |
| AluI | AGCT | 2 cut(s) | 389, 579 |
| Alw21I | GWGCWC | 1 cut(s) | 612 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| Alw44I | GTGCAC | 1 cut(s) | 608 |
| AlwI | GGATC | 1 cut(s) | 44 |
| AoxI | GGCC | 1 cut(s) | 347 |
| ApaLI | GTGCAC | 1 cut(s) | 608 |
| ApoI | RAATTY | 3 cut(s) | 265, 318, 448 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| AspS9I | GGNCC | 1 cut(s) | 347 |
| AsuHPI | GGTGA | 1 cut(s) | 413 |
| AsuII | TTCGAA | 1 cut(s) | 359 |
| BaeGI | GKGCMC | 1 cut(s) | 612 |
| BauI | CACGAG | 1 cut(s) | 519 |
| Bbv12I | GWGCWC | 1 cut(s) | 612 |
| BccI | CCATC | 1 cut(s) | 188 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 21, 55 |
| BciT130I | CCWGG | 1 cut(s) | 292 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 2 cut(s) | 225, 613 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| Bme1390I | CCNGG | 1 cut(s) | 292 |
| BmgT120I | GGNCC | 1 cut(s) | 347 |
| BmiI | GGNNCC | 1 cut(s) | 348 |
| BmrFI | CCNGG | 1 cut(s) | 292 |
| BmrI | ACTGGG | 1 cut(s) | 534 |
| BmsI | GCATC | 2 cut(s) | 160, 360 |
| BmuI | ACTGGG | 1 cut(s) | 534 |
| BpmI | CTGGAG | 1 cut(s) | 449 |
| Bpu14I | TTCGAA | 1 cut(s) | 359 |
| BpuEI | CTTGAG | 1 cut(s) | 164 |
| BsaJI | CCNNGG | 4 cut(s) | 31, 290, 291, 588 |
| Bse1I | ACTGG | 2 cut(s) | 466, 540 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 292 |
| BseDI | CCNNGG | 4 cut(s) | 31, 290, 291, 588 |
| BseGI | GGATG | 1 cut(s) | 88 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseNI | ACTGG | 2 cut(s) | 466, 540 |
| BseSI | GKGCMC | 1 cut(s) | 612 |
| BshFI | GGCC | 1 cut(s) | 349 |
| BsiHKAI | GWGCWC | 1 cut(s) | 612 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BsmBI | CGTCTC | 1 cut(s) | 107 |
| BsmI | GAATGC | 1 cut(s) | 172 |
| BsnI | GGCC | 1 cut(s) | 349 |
| Bsp119I | TTCGAA | 1 cut(s) | 359 |
| Bsp1286I | GDGCHC | 1 cut(s) | 612 |
| Bsp1407I | TGTACA | 1 cut(s) | 485 |
| Bsp143I | GATC | 5 cut(s) | 36, 120, 241, 274, 472 |
| BspACI | CCGC | 2 cut(s) | 170, 344 |
| BspANI | GGCC | 1 cut(s) | 349 |
| BspLI | GGNNCC | 1 cut(s) | 348 |
| BspPI | GGATC | 1 cut(s) | 44 |
| BspT104I | TTCGAA | 1 cut(s) | 359 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrGI | TGTACA | 1 cut(s) | 485 |
| BsrI | ACTGG | 2 cut(s) | 466, 540 |
| BssECI | CCNNGG | 4 cut(s) | 31, 290, 291, 588 |
| BssMI | GATC | 5 cut(s) | 36, 120, 241, 274, 472 |
| BssSI | CACGAG | 1 cut(s) | 519 |
| BssT1I | CCWWGG | 1 cut(s) | 588 |
| Bst2BI | CACGAG | 1 cut(s) | 519 |
| Bst2UI | CCWGG | 1 cut(s) | 292 |
| Bst4CI | ACNGT | 1 cut(s) | 258 |
| BstAUI | TGTACA | 1 cut(s) | 485 |
| BstBI | TTCGAA | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 2 cut(s) | 516, 577 |
| BstEII | GGTNACC | 1 cut(s) | 401 |
| BstF5I | GGATG | 1 cut(s) | 88 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstKTI | GATC | 5 cut(s) | 39, 123, 244, 277, 475 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstMBI | GATC | 5 cut(s) | 36, 120, 241, 274, 472 |
| BstNI | CCWGG | 1 cut(s) | 292 |
| BstNSI | RCATGY | 2 cut(s) | 514, 518 |
| BstPI | GGTNACC | 1 cut(s) | 401 |
| BstSCI | CCNGG | 1 cut(s) | 290 |
| BstSLI | GKGCMC | 1 cut(s) | 612 |
| BstX2I | RGATCY | 1 cut(s) | 36 |
| BstYI | RGATCY | 1 cut(s) | 36 |
| BsuRI | GGCC | 1 cut(s) | 349 |
| BtsCI | GGATG | 1 cut(s) | 88 |
| BtsIMutI | CAGTG | 1 cut(s) | 547 |
| Cac8I | GCNNGC | 2 cut(s) | 516, 577 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Cfr13I | GGNCC | 1 cut(s) | 347 |
| Csp6I | GTAC | 1 cut(s) | 486 |
| CviAII | CATG | 6 cut(s) | 249, 441, 476, 511, 515, 554 |
| CviJI | RGCY | 6 cut(s) | 158, 349, 389, 575, 579, 593 |
| CviKI_1 | RGCY | 6 cut(s) | 158, 349, 389, 575, 579, 593 |
| CviQI | GTAC | 1 cut(s) | 486 |
| DpnI | GATC | 5 cut(s) | 38, 122, 243, 276, 474 |
| DpnII | GATC | 5 cut(s) | 36, 120, 241, 274, 472 |
| Eco130I | CCWWGG | 1 cut(s) | 588 |
| Eco32I | GATATC | 1 cut(s) | 505 |
| Eco57I | CTGAAG | 1 cut(s) | 86 |
| Eco91I | GGTNACC | 1 cut(s) | 401 |
| EcoO65I | GGTNACC | 1 cut(s) | 401 |
| EcoRI | GAATTC | 1 cut(s) | 448 |
| EcoRII | CCWGG | 1 cut(s) | 290 |
| EcoRV | GATATC | 1 cut(s) | 505 |
| EcoT14I | CCWWGG | 1 cut(s) | 588 |
| EcoT22I | ATGCAT | 1 cut(s) | 516 |
| ErhI | CCWWGG | 1 cut(s) | 588 |
| Esp3I | CGTCTC | 1 cut(s) | 107 |
| FaeI | CATG | 6 cut(s) | 252, 444, 479, 514, 518, 557 |
| FatI | CATG | 6 cut(s) | 248, 440, 475, 510, 514, 553 |
| FauI | CCCGC | 1 cut(s) | 337 |
| FblI | GTMKAC | 1 cut(s) | 437 |
| FokI | GGATG | 1 cut(s) | 75 |
| FspBI | CTAG | 2 cut(s) | 225, 613 |
| GlaI | GCGC | 1 cut(s) | 63 |
| GsuI | CTGGAG | 1 cut(s) | 449 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 1 cut(s) | 349 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1II | CATG | 6 cut(s) | 252, 444, 479, 514, 518, 557 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HinfI | GANTC | 4 cut(s) | 85, 210, 281, 545 |
| HphI | GGTGA | 1 cut(s) | 413 |
| Hpy166II | GTNNAC | 3 cut(s) | 438, 488, 610 |
| Hpy188I | TCNGA | 5 cut(s) | 324, 369, 454, 550, 561 |
| Hpy188III | TCNNGA | 3 cut(s) | 204, 278, 410 |
| Hpy8I | GTNNAC | 3 cut(s) | 438, 488, 610 |
| HpyAV | CCTTC | 2 cut(s) | 61, 416 |
| HpyCH4III | ACNGT | 1 cut(s) | 258 |
| HpyCH4IV | ACGT | 1 cut(s) | 364 |
| HpyCH4V | TGCA | 6 cut(s) | 42, 151, 479, 514, 518, 610 |
| HpySE526I | ACGT | 1 cut(s) | 364 |
| Hsp92II | CATG | 6 cut(s) | 252, 444, 479, 514, 518, 557 |
| HspAI | GCGC | 1 cut(s) | 62 |
| Kzo9I | GATC | 5 cut(s) | 36, 120, 241, 274, 472 |
| LmnI | GCTCC | 1 cut(s) | 541 |
| LpnPI | CCDG | 7 cut(s) | 95, 277, 304, 410, 479, 553, 589 |
| LweI | GCATC | 2 cut(s) | 160, 360 |
| MaeI | CTAG | 2 cut(s) | 225, 613 |
| MaeII | ACGT | 1 cut(s) | 364 |
| MaeIII | GTNAC | 1 cut(s) | 401 |
| MalI | GATC | 5 cut(s) | 38, 122, 243, 276, 474 |
| MboI | GATC | 5 cut(s) | 36, 120, 241, 274, 472 |
| MboII | GAAGA | 1 cut(s) | 130 |
| MflI | RGATCY | 1 cut(s) | 36 |
| MhlI | GDGCHC | 1 cut(s) | 612 |
| MluCI | AATT | 4 cut(s) | 25, 265, 318, 448 |
| MmeI | TCCRAC | 1 cut(s) | 142 |
| MnlI | CCTC | 4 cut(s) | 26, 51, 102, 200 |
| Mph1103I | ATGCAT | 1 cut(s) | 516 |
| MspR9I | CCNGG | 1 cut(s) | 292 |
| Mva1269I | GAATGC | 1 cut(s) | 172 |
| MvaI | CCWGG | 1 cut(s) | 292 |
| NdeII | GATC | 5 cut(s) | 36, 120, 241, 274, 472 |
| NlaIII | CATG | 6 cut(s) | 252, 444, 479, 514, 518, 557 |
| NlaIV | GGNNCC | 1 cut(s) | 348 |
| NmeAIII | GCCGAG | 1 cut(s) | 56 |
| NmuCI | GTSAC | 1 cut(s) | 401 |
| NsiI | ATGCAT | 1 cut(s) | 516 |
| NspI | RCATGY | 2 cut(s) | 514, 518 |
| NspV | TTCGAA | 1 cut(s) | 359 |
| PaeI | GCATGC | 1 cut(s) | 518 |
| PasI | CCCWGGG | 1 cut(s) | 291 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 361, 370 |
| PctI | GAATGC | 1 cut(s) | 172 |
| PfeI | GAWTC | 4 cut(s) | 85, 210, 281, 545 |
| Psp6I | CCWGG | 1 cut(s) | 290 |
| PspEI | GGTNACC | 1 cut(s) | 401 |
| PspGI | CCWGG | 1 cut(s) | 290 |
| PspN4I | GGNNCC | 1 cut(s) | 348 |
| PspPI | GGNCC | 1 cut(s) | 347 |
| PsuI | RGATCY | 1 cut(s) | 36 |
| RsaI | GTAC | 1 cut(s) | 487 |
| RsaNI | GTAC | 1 cut(s) | 486 |
| Sau3AI | GATC | 5 cut(s) | 36, 120, 241, 274, 472 |
| Sau96I | GGNCC | 1 cut(s) | 347 |
| ScrFI | CCNGG | 1 cut(s) | 292 |
| SduI | GDGCHC | 1 cut(s) | 612 |
| SetI | ASST | 5 cut(s) | 367, 391, 408, 493, 581 |
| SfaNI | GCATC | 2 cut(s) | 160, 360 |
| SfuI | TTCGAA | 1 cut(s) | 359 |
| SmlI | CTYRAG | 1 cut(s) | 143 |
| SmoI | CTYRAG | 1 cut(s) | 143 |
| SphI | GCATGC | 1 cut(s) | 518 |
| Sse9I | AATT | 4 cut(s) | 25, 265, 318, 448 |
| SsiI | CCGC | 2 cut(s) | 170, 344 |
| SspMI | CTAG | 2 cut(s) | 225, 613 |
| StyD4I | CCNGG | 1 cut(s) | 290 |
| StyI | CCWWGG | 1 cut(s) | 588 |
| TaaI | ACNGT | 1 cut(s) | 258 |
| TaiI | ACGT | 1 cut(s) | 367 |
| TaqI | TCGA | 1 cut(s) | 359 |
| TaqII | GACCGA | 1 cut(s) | 234 |
| TasI | AATT | 4 cut(s) | 25, 265, 318, 448 |
| TatI | WGTACW | 1 cut(s) | 485 |
| TfiI | GAWTC | 4 cut(s) | 85, 210, 281, 545 |
| TscAI | CASTG | 1 cut(s) | 547 |
| TseFI | GTSAC | 1 cut(s) | 401 |
| Tsp45I | GTSAC | 1 cut(s) | 401 |
| TspDTI | ATGAA | 1 cut(s) | 330 |
| TspRI | CASTG | 1 cut(s) | 547 |
| VneI | GTGCAC | 1 cut(s) | 608 |
| XapI | RAATTY | 3 cut(s) | 265, 318, 448 |
| XceI | RCATGY | 2 cut(s) | 514, 518 |
| XmiI | GTMKAC | 1 cut(s) | 437 |
| XspI | CTAG | 2 cut(s) | 225, 613 |
| Zsp2I | ATGCAT | 1 cut(s) | 516 |