ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 600 |
| AccII | CGCG | 2 cut(s) | 7, 891 |
| AccIII | TCCGGA | 1 cut(s) | 127 |
| AciI | CCGC | 4 cut(s) | 7, 806, 865, 889 |
| AclWI | GGATC | 2 cut(s) | 45, 399 |
| AcoI | YGGCCR | 1 cut(s) | 236 |
| AcsI | RAATTY | 5 cut(s) | 204, 446, 655, 921, 977 |
| AcuI | CTGAAG | 2 cut(s) | 171, 447 |
| AfaI | GTAC | 2 cut(s) | 63, 677 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 32, 33, 134, 460, 848, 874 |
| AgsI | TTSAA | 3 cut(s) | 100, 632, 713 |
| AjnI | CCWGG | 1 cut(s) | 263 |
| AluBI | AGCT | 6 cut(s) | 80, 149, 277, 328, 625, 791 |
| AluI | AGCT | 6 cut(s) | 80, 149, 277, 328, 625, 791 |
| Alw21I | GWGCWC | 2 cut(s) | 201, 259 |
| Alw26I | GTCTC | 2 cut(s) | 839, 927 |
| Alw44I | GTGCAC | 2 cut(s) | 197, 255 |
| AlwI | GGATC | 2 cut(s) | 45, 399 |
| Aor13HI | TCCGGA | 1 cut(s) | 127 |
| AoxI | GGCC | 4 cut(s) | 236, 261, 914, 939 |
| ApaLI | GTGCAC | 2 cut(s) | 197, 255 |
| ApeKI | GCWGC | 2 cut(s) | 277, 292 |
| ApoI | RAATTY | 5 cut(s) | 204, 446, 655, 921, 977 |
| AspLEI | GCGC | 2 cut(s) | 7, 864 |
| AspS9I | GGNCC | 6 cut(s) | 121, 261, 307, 346, 382, 914 |
| AsuC2I | CCSGG | 1 cut(s) | 842 |
| AsuHPI | GGTGA | 2 cut(s) | 443, 568 |
| AsuII | TTCGAA | 1 cut(s) | 363 |
| AvaII | GGWCC | 4 cut(s) | 121, 307, 346, 382 |
| BaeGI | GKGCMC | 2 cut(s) | 201, 259 |
| BalI | TGGCCA | 1 cut(s) | 238 |
| BauI | CACGAG | 1 cut(s) | 636 |
| Bbv12I | GWGCWC | 2 cut(s) | 201, 259 |
| BbvCI | CCTCAGC | 1 cut(s) | 378 |
| BbvI | GCAGC | 2 cut(s) | 264, 279 |
| BccI | CCATC | 2 cut(s) | 132, 737 |
| BciT130I | CCWGG | 1 cut(s) | 265 |
| BclI | TGATCA | 1 cut(s) | 589 |
| BcnI | CCSGG | 1 cut(s) | 842 |
| BcoDI | GTCTC | 2 cut(s) | 839, 927 |
| BfaI | CTAG | 1 cut(s) | 918 |
| BfmI | CTRYAG | 2 cut(s) | 293, 681 |
| BfoI | RGCGCY | 1 cut(s) | 865 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 744 |
| BisI | GCNGC | 3 cut(s) | 278, 293, 865 |
| BlpI | GCTNAGC | 1 cut(s) | 324 |
| BlsI | GCNGC | 3 cut(s) | 279, 294, 866 |
| Bme1390I | CCNGG | 2 cut(s) | 265, 842 |
| Bme18I | GGWCC | 4 cut(s) | 121, 307, 346, 382 |
| BmgT120I | GGNCC | 6 cut(s) | 121, 261, 307, 346, 382, 914 |
| BmiI | GGNNCC | 2 cut(s) | 732, 879 |
| BmrFI | CCNGG | 2 cut(s) | 265, 842 |
| BmsI | GCATC | 1 cut(s) | 77 |
| Bpu10I | CCTNAGC | 1 cut(s) | 378 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 324 |
| Bpu14I | TTCGAA | 1 cut(s) | 363 |
| BpuEI | CTTGAG | 1 cut(s) | 60 |
| BpuMI | CCSGG | 1 cut(s) | 842 |
| BsaI | GGTCTC | 1 cut(s) | 839 |
| BsaJI | CCNNGG | 5 cut(s) | 264, 408, 582, 726, 873 |
| BsaWI | WCCGGW | 2 cut(s) | 127, 848 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 780, 810, 892, 922 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 32, 33, 134, 460, 848, 874 |
| Bse1I | ACTGG | 1 cut(s) | 69 |
| BseAI | TCCGGA | 1 cut(s) | 127 |
| BseBI | CCWGG | 1 cut(s) | 265 |
| BseDI | CCNNGG | 5 cut(s) | 264, 408, 582, 726, 873 |
| BseGI | GGATG | 1 cut(s) | 124 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 32, 33, 134, 460, 848, 874 |
| BseMII | CTCAG | 2 cut(s) | 315, 369 |
| BseNI | ACTGG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 1 cut(s) | 63 |
| BseSI | GKGCMC | 2 cut(s) | 201, 259 |
| BseXI | GCAGC | 2 cut(s) | 264, 279 |
| Bsh1236I | CGCG | 2 cut(s) | 7, 891 |
| BshFI | GGCC | 4 cut(s) | 238, 263, 916, 941 |
| BsiHKAI | GWGCWC | 2 cut(s) | 201, 259 |
| BsiSI | CCGG | 3 cut(s) | 128, 842, 849 |
| BslFI | GGGAC | 2 cut(s) | 312, 791 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 32, 33, 134, 460, 848, 874 |
| BsmAI | GTCTC | 2 cut(s) | 839, 927 |
| BsmFI | GGGAC | 2 cut(s) | 312, 791 |
| BsnI | GGCC | 4 cut(s) | 238, 263, 916, 941 |
| Bso31I | GGTCTC | 1 cut(s) | 839 |
| Bsp119I | TTCGAA | 1 cut(s) | 363 |
| Bsp1286I | GDGCHC | 2 cut(s) | 201, 259 |
| Bsp13I | TCCGGA | 1 cut(s) | 127 |
| Bsp143I | GATC | 3 cut(s) | 37, 404, 589 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 324 |
| BspACI | CCGC | 4 cut(s) | 7, 806, 865, 889 |
| BspANI | GGCC | 4 cut(s) | 238, 263, 916, 941 |
| BspCNI | CTCAG | 2 cut(s) | 316, 370 |
| BspEI | TCCGGA | 1 cut(s) | 127 |
| BspFNI | CGCG | 2 cut(s) | 7, 891 |
| BspLI | GGNNCC | 2 cut(s) | 732, 879 |
| BspMAI | CTGCAG | 1 cut(s) | 297 |
| BspPI | GGATC | 2 cut(s) | 45, 399 |
| BspT104I | TTCGAA | 1 cut(s) | 363 |
| BspTNI | GGTCTC | 1 cut(s) | 839 |
| BsrI | ACTGG | 1 cut(s) | 69 |
| BssECI | CCNNGG | 5 cut(s) | 264, 408, 582, 726, 873 |
| BssMI | GATC | 3 cut(s) | 37, 404, 589 |
| BssSI | CACGAG | 1 cut(s) | 636 |
| BssT1I | CCWWGG | 3 cut(s) | 408, 726, 873 |
| Bst2BI | CACGAG | 1 cut(s) | 636 |
| Bst2UI | CCWGG | 1 cut(s) | 265 |
| Bst4CI | ACNGT | 3 cut(s) | 142, 172, 437 |
| BstBI | TTCGAA | 1 cut(s) | 363 |
| BstC8I | GCNNGC | 1 cut(s) | 749 |
| BstDEI | CTNAG | 3 cut(s) | 281, 324, 378 |
| BstEII | GGTNACC | 1 cut(s) | 431 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 872 |
| BstF5I | GGATG | 1 cut(s) | 124 |
| BstFNI | CGCG | 2 cut(s) | 7, 891 |
| BstH2I | RGCGCY | 1 cut(s) | 865 |
| BstHHI | GCGC | 2 cut(s) | 7, 864 |
| BstKTI | GATC | 3 cut(s) | 40, 407, 592 |
| BstMAI | GTCTC | 2 cut(s) | 839, 927 |
| BstMBI | GATC | 3 cut(s) | 37, 404, 589 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 744 |
| BstNI | CCWGG | 1 cut(s) | 265 |
| BstNSI | RCATGY | 1 cut(s) | 751 |
| BstPI | GGTNACC | 1 cut(s) | 431 |
| BstSCI | CCNGG | 2 cut(s) | 263, 840 |
| BstSFI | CTRYAG | 2 cut(s) | 293, 681 |
| BstSLI | GKGCMC | 2 cut(s) | 201, 259 |
| BstUI | CGCG | 2 cut(s) | 7, 891 |
| BstV1I | GCAGC | 2 cut(s) | 264, 279 |
| BstX2I | RGATCY | 1 cut(s) | 404 |
| BstYI | RGATCY | 1 cut(s) | 404 |
| BsuRI | GGCC | 4 cut(s) | 238, 263, 916, 941 |
| BtsCI | GGATG | 1 cut(s) | 124 |
| BtsIMutI | CAGTG | 1 cut(s) | 168 |
| Cac8I | GCNNGC | 1 cut(s) | 749 |
| CfoI | GCGC | 2 cut(s) | 7, 864 |
| Cfr13I | GGNCC | 6 cut(s) | 121, 261, 307, 346, 382, 914 |
| Csp6I | GTAC | 2 cut(s) | 62, 676 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 500, 535 |
| CviAII | CATG | 8 cut(s) | 32, 41, 184, 386, 541, 607, 652, 748 |
| CviQI | GTAC | 2 cut(s) | 62, 676 |
| DdeI | CTNAG | 3 cut(s) | 281, 324, 378 |
| DpnI | GATC | 3 cut(s) | 39, 406, 591 |
| DpnII | GATC | 3 cut(s) | 37, 404, 589 |
| EaeI | YGGCCR | 1 cut(s) | 236 |
| Eco130I | CCWWGG | 3 cut(s) | 408, 726, 873 |
| Eco147I | AGGCCT | 1 cut(s) | 941 |
| Eco31I | GGTCTC | 1 cut(s) | 839 |
| Eco47I | GGWCC | 4 cut(s) | 121, 307, 346, 382 |
| Eco57I | CTGAAG | 2 cut(s) | 171, 447 |
| Eco91I | GGTNACC | 1 cut(s) | 431 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 872 |
| EcoO65I | GGTNACC | 1 cut(s) | 431 |
| EcoRI | GAATTC | 3 cut(s) | 204, 655, 921 |
| EcoRII | CCWGG | 1 cut(s) | 263 |
| EcoT14I | CCWWGG | 3 cut(s) | 408, 726, 873 |
| EcoT22I | ATGCAT | 1 cut(s) | 391 |
| ErhI | CCWWGG | 3 cut(s) | 408, 726, 873 |
| FaeI | CATG | 8 cut(s) | 35, 44, 187, 389, 544, 610, 655, 751 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 232, 264 |
| FaqI | GGGAC | 2 cut(s) | 312, 791 |
| FatI | CATG | 8 cut(s) | 31, 40, 183, 385, 540, 606, 651, 747 |
| FauI | CCCGC | 1 cut(s) | 896 |
| FbaI | TGATCA | 1 cut(s) | 589 |
| Fnu4HI | GCNGC | 3 cut(s) | 278, 293, 865 |
| FokI | GGATG | 1 cut(s) | 111 |
| Fsp4HI | GCNGC | 3 cut(s) | 278, 293, 865 |
| FspBI | CTAG | 1 cut(s) | 918 |
| GlaI | GCGC | 2 cut(s) | 6, 863 |
| GluI | GCNGC | 3 cut(s) | 278, 293, 865 |
| HaeII | RGCGCY | 1 cut(s) | 865 |
| HaeIII | GGCC | 4 cut(s) | 238, 263, 916, 941 |
| HapII | CCGG | 3 cut(s) | 128, 842, 849 |
| HhaI | GCGC | 2 cut(s) | 7, 864 |
| Hin1II | CATG | 8 cut(s) | 35, 44, 187, 389, 544, 610, 655, 751 |
| Hin6I | GCGC | 2 cut(s) | 5, 862 |
| HinP1I | GCGC | 2 cut(s) | 5, 862 |
| HincII | GTYRAC | 1 cut(s) | 423 |
| HindII | GTYRAC | 1 cut(s) | 423 |
| HinfI | GANTC | 4 cut(s) | 360, 506, 545, 691 |
| HpaI | GTTAAC | 1 cut(s) | 423 |
| HpaII | CCGG | 3 cut(s) | 128, 842, 849 |
| HphI | GGTGA | 2 cut(s) | 443, 568 |
| Hpy166II | GTNNAC | 6 cut(s) | 121, 199, 257, 423, 559, 579 |
| Hpy188I | TCNGA | 2 cut(s) | 87, 532 |
| Hpy188III | TCNNGA | 3 cut(s) | 128, 335, 593 |
| Hpy8I | GTNNAC | 6 cut(s) | 121, 199, 257, 423, 559, 579 |
| Hpy99I | CGWCG | 1 cut(s) | 87 |
| HpyAV | CCTTC | 5 cut(s) | 146, 320, 422, 468, 830 |
| HpyCH4III | ACNGT | 3 cut(s) | 142, 172, 437 |
| HpyCH4V | TGCA | 4 cut(s) | 199, 257, 295, 389 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 744 |
| HpyF3I | CTNAG | 3 cut(s) | 281, 324, 378 |
| Hsp92II | CATG | 8 cut(s) | 35, 44, 187, 389, 544, 610, 655, 751 |
| HspAI | GCGC | 2 cut(s) | 5, 862 |
| Kpn2I | TCCGGA | 1 cut(s) | 127 |
| Ksp22I | TGATCA | 1 cut(s) | 589 |
| KspAI | GTTAAC | 1 cut(s) | 423 |
| Kzo9I | GATC | 3 cut(s) | 37, 404, 589 |
| LmnI | GCTCC | 5 cut(s) | 28, 622, 676, 730, 788 |
| Lsp1109I | GCAGC | 2 cut(s) | 264, 279 |
| LweI | GCATC | 1 cut(s) | 77 |
| MaeI | CTAG | 1 cut(s) | 918 |
| MaeIII | GTNAC | 4 cut(s) | 10, 164, 431, 640 |
| MalI | GATC | 3 cut(s) | 39, 406, 591 |
| MboI | GATC | 3 cut(s) | 37, 404, 589 |
| MflI | RGATCY | 1 cut(s) | 404 |
| MhlI | GDGCHC | 2 cut(s) | 201, 259 |
| MlsI | TGGCCA | 1 cut(s) | 238 |
| MluCI | AATT | 6 cut(s) | 204, 446, 655, 663, 921, 977 |
| MluNI | TGGCCA | 1 cut(s) | 238 |
| MlyI | GAGTC | 1 cut(s) | 500 |
| MmeI | TCCRAC | 4 cut(s) | 65, 84, 478, 930 |
| Mox20I | TGGCCA | 1 cut(s) | 238 |
| Mph1103I | ATGCAT | 1 cut(s) | 391 |
| MroI | TCCGGA | 1 cut(s) | 127 |
| MscI | TGGCCA | 1 cut(s) | 238 |
| MseI | TTAA | 5 cut(s) | 228, 422, 468, 810, 945 |
| Msp20I | TGGCCA | 1 cut(s) | 238 |
| MspI | CCGG | 3 cut(s) | 128, 842, 849 |
| MspR9I | CCNGG | 2 cut(s) | 265, 842 |
| MvaI | CCWGG | 1 cut(s) | 265 |
| MvnI | CGCG | 2 cut(s) | 7, 891 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 744 |
| NciI | CCSGG | 1 cut(s) | 842 |
| NdeII | GATC | 3 cut(s) | 37, 404, 589 |
| NlaIII | CATG | 8 cut(s) | 35, 44, 187, 389, 544, 610, 655, 751 |
| NlaIV | GGNNCC | 2 cut(s) | 732, 879 |
| NmeAIII | GCCGAG | 1 cut(s) | 563 |
| NmuCI | GTSAC | 2 cut(s) | 10, 431 |
| NsiI | ATGCAT | 1 cut(s) | 391 |
| NspI | RCATGY | 1 cut(s) | 751 |
| NspV | TTCGAA | 1 cut(s) | 363 |
| PaeI | GCATGC | 1 cut(s) | 751 |
| PceI | AGGCCT | 1 cut(s) | 941 |
| PfeI | GAWTC | 3 cut(s) | 360, 545, 691 |
| PkrI | GCNGC | 3 cut(s) | 279, 294, 866 |
| PleI | GAGTC | 1 cut(s) | 500 |
| PpsI | GAGTC | 1 cut(s) | 500 |
| PsiI | TTATAA | 1 cut(s) | 600 |
| Psp6I | CCWGG | 1 cut(s) | 263 |
| PspEI | GGTNACC | 1 cut(s) | 431 |
| PspGI | CCWGG | 1 cut(s) | 263 |
| PspN4I | GGNNCC | 2 cut(s) | 732, 879 |
| PspPI | GGNCC | 6 cut(s) | 121, 261, 307, 346, 382, 914 |
| PstI | CTGCAG | 1 cut(s) | 297 |
| PsuI | RGATCY | 1 cut(s) | 404 |
| RsaI | GTAC | 2 cut(s) | 63, 677 |
| RsaNI | GTAC | 2 cut(s) | 62, 676 |
| SaqAI | TTAA | 5 cut(s) | 228, 422, 468, 810, 945 |
| SatI | GCNGC | 3 cut(s) | 278, 293, 865 |
| Sau3AI | GATC | 3 cut(s) | 37, 404, 589 |
| Sau96I | GGNCC | 6 cut(s) | 121, 261, 307, 346, 382, 914 |
| SchI | GAGTC | 1 cut(s) | 500 |
| ScrFI | CCNGG | 2 cut(s) | 265, 842 |
| SduI | GDGCHC | 2 cut(s) | 201, 259 |
| SfaNI | GCATC | 1 cut(s) | 77 |
| SfcI | CTRYAG | 2 cut(s) | 293, 681 |
| SfuI | TTCGAA | 1 cut(s) | 363 |
| SinI | GGWCC | 4 cut(s) | 121, 307, 346, 382 |
| SmlI | CTYRAG | 1 cut(s) | 75 |
| SmoI | CTYRAG | 1 cut(s) | 75 |
| SphI | GCATGC | 1 cut(s) | 751 |
| Sse9I | AATT | 6 cut(s) | 204, 446, 655, 663, 921, 977 |
| SseBI | AGGCCT | 1 cut(s) | 941 |
| SsiI | CCGC | 4 cut(s) | 7, 806, 865, 889 |
| SspMI | CTAG | 1 cut(s) | 918 |
| StuI | AGGCCT | 1 cut(s) | 941 |
| StyD4I | CCNGG | 2 cut(s) | 263, 840 |
| StyI | CCWWGG | 3 cut(s) | 408, 726, 873 |
| TaaI | ACNGT | 3 cut(s) | 142, 172, 437 |
| TaqI | TCGA | 1 cut(s) | 363 |
| TasI | AATT | 6 cut(s) | 204, 446, 655, 663, 921, 977 |
| TatI | WGTACW | 1 cut(s) | 61 |
| TauI | GCSGC | 1 cut(s) | 867 |
| TfiI | GAWTC | 3 cut(s) | 360, 545, 691 |
| Tru1I | TTAA | 5 cut(s) | 228, 422, 468, 810, 945 |
| Tru9I | TTAA | 5 cut(s) | 228, 422, 468, 810, 945 |
| TscAI | CASTG | 1 cut(s) | 175 |
| TseFI | GTSAC | 2 cut(s) | 10, 431 |
| TseI | GCWGC | 2 cut(s) | 277, 292 |
| Tsp45I | GTSAC | 2 cut(s) | 10, 431 |
| TspDTI | ATGAA | 4 cut(s) | 20, 320, 668, 812 |
| TspGWI | ACGGA | 1 cut(s) | 663 |
| TspRI | CASTG | 1 cut(s) | 175 |
| VneI | GTGCAC | 2 cut(s) | 197, 255 |
| VpaK11BI | GGWCC | 4 cut(s) | 121, 307, 346, 382 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 872 |
| XapI | RAATTY | 5 cut(s) | 204, 446, 655, 921, 977 |
| XceI | RCATGY | 1 cut(s) | 751 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 131 |
| XspI | CTAG | 1 cut(s) | 918 |
| Zsp2I | ATGCAT | 1 cut(s) | 391 |