Rorug05G0089200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000045
Physical Location & Seq
Reverse (-)
7647481 .. 7649811
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0089200.1

Sequence Viewer

Length: 981 bp
ATGAGGCCGATTCTGCTGAAAGGACACGAGAGGCCCTTGACTTTCATCAAGTACAACAAGGACGGAGACCTCCTCTTCTCCTGCGCCAAAGACCACAACCCTAACGTCTGGTTCGCCGACAACGGCGAGCGCCTCGGCACCTACGTCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCCAGAGACTCCTCGCGCCTCATCACCGGCAGCGGGGACTCCACCGCCAAGCTCTGGAATGTTCGGACCGGCGAGCAGCTATTCTCCTTCCACTTCAAATGTCCGGCGAGATCCGTCGAGTTCTCCGTCGGCGATCGCCTCGCCGTCATTACCACTGATCCCTTCATGGGAGTTCCTTCTGCGATTCACGTCAAACGCATCGCTAAGGACCACGCCGCTCAGACTGGTGAGTCCGTTCTGACACTGAATGGGCACCAAGGAAAGATAAACAGAGCTGTATGGGGGCCTTTGAACAAAACTATCATTAGCGTTGGAGAAGATTTTGTGATTCGTATTTGGGATTCTGAGACTGGGAAATTACTCAAAAAGAACGAGGCGGCGATTGGTCACAAGGAGGAGATAAAATCACTAGTAAAATCTAAGGATGGTTCTCACTTTCTAACTGGTTCCCGAGATAAATCTGCCAAGCTCTGGGATACTAGAACATTAACTCTTATCAAGACCTACGTGACGCAGCCTCCCGTCAACGCAGTTGCAATGTCTCCTCTGCTTGATCATGTCGTGCTTGGTGGTGGCCAGGATGCCACTAAAGTCACCACGACTGATCATCGCGCAGGGCATTTTGAAGCCAAATTCTTTGACAAGGTTCTTGAAAAGGAGATTGGAACTGTTAAAGGGCATTTCTCACCTATTAATGCTTTGGACTTCAATCCTGATGGTAACAGTTTCTCAACCGGAGGTGAGGATGGTTATGTACGTATAAATCATTTTGACCAGGAGTACTTCAGAATCAAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

326

Amino Acids

36.11

Weight (kDa)

8.74

Isoelectric Point (pI)

26.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EIF3I PF24805 1 - 325 1.5e-126 EIF3I
Beta-prop_TEP1_2nd PF25047 5 - 117 6.2e-07 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 5 - 84 3.8e-14 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 6 - 104 5e-15 WDR5 beta-propeller domain
WD40_Prp19 PF24814 6 - 91 4.2e-07 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 6 - 173 1.8e-13 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 6 - 87 4.3e-10 WDR3 second beta-propeller domain
WDR55 PF24796 7 - 91 3.2e-06 WDR55
Beta-prop_EML_2 PF23414 9 - 87 1.5e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3 PF25174 11 - 118 1e-14 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 11 - 109 3.2e-06 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 12 - 103 9.2e-07 WDHD1 first WD40 domain
WD40_Gbeta PF25391 13 - 80 7.3e-09 G protein beta WD-40 repeat protein
WD40 PF00400 42 - 80 3e-09 WD domain, G-beta repeat
Beta-prop_EML PF23409 48 - 267 1.4e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_TEP1_2nd PF25047 48 - 175 9.5e-06 TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 116 - 247 3.7e-06 CAF1B/HIR1 beta-propeller domain
WD40_Prp19 PF24814 133 - 314 2e-16 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 133 - 254 1.1e-14 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 133 - 249 1.8e-16 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 137 - 314 1.7e-22 THOC3 beta-propeller domain
WD40_Gbeta PF25391 142 - 264 3.2e-10 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 186 - 262 4.9e-06 CDC20/Fizzy WD40 domain
WD40 PF00400 189 - 219 3.8e-06 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 201 - 324 3e-09 Echinoderm microtubule-associated protein second beta-propeller
WD40 PF00400 279 - 314 1.4e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 409
AatII GACGTC 1 cut(s) 180
AccB1I GGYRCC 3 cut(s) 137, 158, 432
AccB7I CCANNNNNTGG 2 cut(s) 234, 651
AccBSI CCGCTC 1 cut(s) 398
AccII CGCG 2 cut(s) 196, 792
AciI CCGC 4 cut(s) 213, 225, 396, 557
AclWI GGATC 2 cut(s) 285, 332
AcoI YGGCCR 2 cut(s) 148, 754
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 1 cut(s) 949
AcyI GRCGYC 2 cut(s) 159, 177
AfaI GTAC 3 cut(s) 53, 936, 962
AfiI CCNNNNNNNGG 4 cut(s) 213, 234, 347, 651
AgsI TTSAA 5 cut(s) 277, 472, 806, 833, 889
AhlI ACTAGT 1 cut(s) 589
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 2 cut(s) 756, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 825, 857
AluBI AGCT 4 cut(s) 232, 259, 455, 649
AluI AGCT 4 cut(s) 232, 259, 455, 649
Alw26I GTCTC 5 cut(s) 60, 180, 184, 521, 726
AlwI GGATC 2 cut(s) 285, 332
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 5 cut(s) 5, 32, 148, 464, 754
ApeKI GCWGC 4 cut(s) 171, 210, 256, 694
ApoI RAATTY 1 cut(s) 812
AseI ATTAAT 1 cut(s) 873
AsiSI GCGATCGC 1 cut(s) 316
AspLEI GCGC 5 cut(s) 86, 132, 161, 198, 794
AspS9I GGNCC 4 cut(s) 33, 246, 388, 464
AsuHPI GGTGA 5 cut(s) 196, 419, 766, 858, 932
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 2 cut(s) 246, 388
BaeGI GKGCMC 1 cut(s) 435
BalI TGGCCA 1 cut(s) 756
BanI GGYRCC 3 cut(s) 137, 158, 432
BauI CACGAG 1 cut(s) 26
BbvI GCAGC 4 cut(s) 158, 222, 268, 706
BccI CCATC 3 cut(s) 599, 890, 920
BceAI ACGGC 4 cut(s) 139, 146, 172, 308
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 2 cut(s) 758, 956
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 2 cut(s) 733, 784
BcoDI GTCTC 5 cut(s) 60, 180, 184, 521, 726
BcuI ACTAGT 1 cut(s) 589
BfaI CTAG 2 cut(s) 590, 660
BfoI RGCGCY 2 cut(s) 133, 162
BfuI GTATCC 1 cut(s) 649
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 6 cut(s) 172, 211, 257, 396, 558, 695
BlsI GCNGC 6 cut(s) 173, 212, 258, 397, 559, 696
BmcAI AGTACT 1 cut(s) 962
Bme1390I CCNGG 2 cut(s) 758, 956
Bme18I GGWCC 2 cut(s) 246, 388
BmeT110I CYCGRG 1 cut(s) 630
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 4 cut(s) 33, 246, 388, 464
BmiI GGNNCC 5 cut(s) 139, 160, 434, 465, 628
BmrFI CCNGG 2 cut(s) 758, 956
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 2 cut(s) 387, 751
BmuI ACTGGG 1 cut(s) 540
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 384
BsaAI YACGTR 2 cut(s) 688, 938
BsaHI GRCGYC 2 cut(s) 159, 177
BsaI GGTCTC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 133, 436
BsaWI WCCGGW 1 cut(s) 914
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 234, 347, 651
Bse118I RCCGGY 2 cut(s) 206, 248
Bse1I ACTGG 3 cut(s) 409, 535, 628
Bse3DI GCAATG 1 cut(s) 723
BseBI CCWGG 2 cut(s) 758, 956
BseDI CCNNGG 2 cut(s) 133, 436
BseGI GGATG 3 cut(s) 610, 766, 931
BseLI CCNNNNNNNGG 4 cut(s) 213, 234, 347, 651
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 2 cut(s) 413, 516
BseNI ACTGG 3 cut(s) 409, 535, 628
BseRI GAGGAG 4 cut(s) 62, 181, 590, 714
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 4 cut(s) 158, 222, 268, 706
Bsh1236I CGCG 2 cut(s) 196, 792
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 5 cut(s) 7, 34, 150, 466, 756
BshNI GGYRCC 3 cut(s) 137, 158, 432
BsiEI CGRYCG 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 630
BsiSI CCGG 4 cut(s) 207, 249, 284, 915
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 4 cut(s) 213, 234, 347, 651
BsmAI GTCTC 5 cut(s) 60, 180, 184, 521, 726
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 5 cut(s) 7, 34, 150, 466, 756
Bso31I GGTCTC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 5 cut(s) 290, 313, 337, 733, 784
BspACI CCGC 4 cut(s) 213, 225, 396, 557
BspANI GGCC 5 cut(s) 7, 34, 150, 466, 756
BspCNI CTCAG 2 cut(s) 412, 517
BspFNI CGCG 2 cut(s) 196, 792
BspLI GGNNCC 5 cut(s) 139, 160, 434, 465, 628
BspPI GGATC 2 cut(s) 285, 332
BspT107I GGYRCC 3 cut(s) 137, 158, 432
BspTNI GGTCTC 1 cut(s) 60
BsrBI CCGCTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 723
BsrFI RCCGGY 2 cut(s) 206, 248
BsrI ACTGG 3 cut(s) 409, 535, 628
BssAI RCCGGY 2 cut(s) 206, 248
BssECI CCNNGG 2 cut(s) 133, 436
BssMI GATC 5 cut(s) 290, 313, 337, 733, 784
BssNI GRCGYC 2 cut(s) 159, 177
BssSI CACGAG 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 436
Bst2BI CACGAG 1 cut(s) 26
Bst2UI CCWGG 2 cut(s) 758, 956
Bst4CI ACNGT 2 cut(s) 850, 905
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 2 cut(s) 159, 177
BstBAI YACGTR 2 cut(s) 688, 938
BstC8I GCNNGC 2 cut(s) 128, 254
BstDEI CTNAG 4 cut(s) 384, 399, 525, 600
BstF5I GGATG 3 cut(s) 610, 766, 931
BstFNI CGCG 2 cut(s) 196, 792
BstH2I RGCGCY 2 cut(s) 133, 162
BstHHI GCGC 5 cut(s) 86, 132, 161, 198, 794
BstKTI GATC 5 cut(s) 293, 316, 340, 736, 787
BstMAI GTCTC 5 cut(s) 60, 180, 184, 521, 726
BstMBI GATC 5 cut(s) 290, 313, 337, 733, 784
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 13, 156
BstNI CCWGG 2 cut(s) 758, 956
BstSCI CCNGG 2 cut(s) 756, 954
BstSLI GKGCMC 1 cut(s) 435
BstSNI TACGTA 1 cut(s) 938
BstUI CGCG 2 cut(s) 196, 792
BstV1I GCAGC 4 cut(s) 158, 222, 268, 706
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 5 cut(s) 7, 34, 150, 466, 756
BtgZI GCGATG 2 cut(s) 364, 773
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 3 cut(s) 610, 766, 931
BtsIMutI CAGTG 2 cut(s) 333, 422
Cac8I GCNNGC 2 cut(s) 128, 254
CfoI GCGC 5 cut(s) 86, 132, 161, 198, 794
Cfr10I RCCGGY 2 cut(s) 206, 248
Cfr13I GGNCC 4 cut(s) 33, 246, 388, 464
CpoI CGGWCCG 1 cut(s) 246
CseI GACGC 1 cut(s) 700
Csp6I GTAC 3 cut(s) 52, 935, 961
CspI CGGWCCG 1 cut(s) 246
CviAII CATG 2 cut(s) 346, 737
CviQI GTAC 3 cut(s) 52, 935, 961
DdeI CTNAG 4 cut(s) 384, 399, 525, 600
DinI GGCGCC 1 cut(s) 160
DpnI GATC 5 cut(s) 292, 315, 339, 735, 786
DpnII GATC 5 cut(s) 290, 313, 337, 733, 784
DrdI GACNNNNNNGTC 1 cut(s) 409
DseDI GACNNNNNNGTC 1 cut(s) 409
EaeI YGGCCR 2 cut(s) 148, 754
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco105I TACGTA 1 cut(s) 938
Eco130I CCWWGG 1 cut(s) 436
Eco31I GGTCTC 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 246, 388
Eco57I CTGAAG 1 cut(s) 949
Eco88I CYCGRG 1 cut(s) 630
EcoO109I RGGNCCY 2 cut(s) 33, 464
EcoRII CCWGG 2 cut(s) 756, 954
EcoT14I CCWWGG 1 cut(s) 436
EgeI GGCGCC 1 cut(s) 160
EheI GGCGCC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 2 cut(s) 349, 740
FaiI YATR 5 cut(s) 347, 460, 738, 933, 941
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 345, 736
FauI CCCGC 1 cut(s) 206
FbaI TGATCA 2 cut(s) 733, 784
Fnu4HI GCNGC 6 cut(s) 172, 211, 257, 396, 558, 695
FokI GGATG 3 cut(s) 617, 773, 938
Fsp4HI GCNGC 6 cut(s) 172, 211, 257, 396, 558, 695
FspBI CTAG 2 cut(s) 590, 660
GlaI GCGC 5 cut(s) 85, 131, 160, 197, 793
GluI GCNGC 6 cut(s) 172, 211, 257, 396, 558, 695
GsuI CTGGAG 1 cut(s) 166
HaeII RGCGCY 2 cut(s) 133, 162
HaeIII GGCC 5 cut(s) 7, 34, 150, 466, 756
HapII CCGG 4 cut(s) 207, 249, 284, 915
HgaI GACGC 1 cut(s) 700
HhaI GCGC 5 cut(s) 86, 132, 161, 198, 794
Hin1I GRCGYC 2 cut(s) 159, 177
Hin1II CATG 2 cut(s) 349, 740
Hin6I GCGC 5 cut(s) 84, 130, 159, 196, 792
HinP1I GCGC 5 cut(s) 84, 130, 159, 196, 792
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HinfI GANTC 8 cut(s) 10, 188, 218, 364, 410, 508, 521, 969
HpaII CCGG 4 cut(s) 207, 249, 284, 915
HphI GGTGA 5 cut(s) 196, 419, 766, 858, 932
Hpy166II GTNNAC 1 cut(s) 706
Hpy188I TCNGA 5 cut(s) 246, 402, 420, 526, 968
Hpy188III TCNNGA 6 cut(s) 183, 235, 630, 679, 830, 893
Hpy8I GTNNAC 1 cut(s) 706
Hpy99I CGWCG 4 cut(s) 149, 179, 299, 311
HpyAV CCTTC 3 cut(s) 277, 352, 366
HpyCH4III ACNGT 2 cut(s) 850, 905
HpyCH4IV ACGT 6 cut(s) 105, 144, 177, 369, 687, 937
HpyCH4V TGCA 1 cut(s) 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 156
HpyF3I CTNAG 4 cut(s) 384, 399, 525, 600
HpySE526I ACGT 6 cut(s) 105, 144, 177, 369, 687, 937
Hsp92I GRCGYC 2 cut(s) 159, 177
Hsp92II CATG 2 cut(s) 349, 740
HspAI GCGC 5 cut(s) 84, 130, 159, 196, 792
KasI GGCGCC 1 cut(s) 158
Ksp22I TGATCA 2 cut(s) 733, 784
Kzo9I GATC 5 cut(s) 290, 313, 337, 733, 784
Lsp1109I GCAGC 4 cut(s) 158, 222, 268, 706
LweI GCATC 2 cut(s) 387, 751
MaeI CTAG 2 cut(s) 590, 660
MaeII ACGT 6 cut(s) 105, 144, 177, 369, 687, 937
MaeIII GTNAC 4 cut(s) 566, 688, 772, 899
MalI GATC 5 cut(s) 292, 315, 339, 735, 786
MbiI CCGCTC 1 cut(s) 398
MboI GATC 5 cut(s) 290, 313, 337, 733, 784
MboII GAAGA 2 cut(s) 67, 509
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 2 cut(s) 536, 812
MluNI TGGCCA 1 cut(s) 756
Mly113I GGCGCC 1 cut(s) 159
MlyI GAGTC 3 cut(s) 182, 212, 419
MmeI TCCRAC 1 cut(s) 472
Mox20I TGGCCA 1 cut(s) 756
MscI TGGCCA 1 cut(s) 756
MseI TTAA 3 cut(s) 668, 852, 873
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 4 cut(s) 207, 249, 284, 915
MspR9I CCNGG 2 cut(s) 758, 956
MvaI CCWGG 2 cut(s) 758, 956
MvnI CGCG 2 cut(s) 196, 792
MwoI GCNNNNNNNGC 2 cut(s) 13, 156
NarI GGCGCC 1 cut(s) 159
NdeII GATC 5 cut(s) 290, 313, 337, 733, 784
NlaIII CATG 2 cut(s) 349, 740
NlaIV GGNNCC 5 cut(s) 139, 160, 434, 465, 628
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 3 cut(s) 566, 688, 772
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 303
PfeI GAWTC 5 cut(s) 10, 364, 508, 521, 969
PflMI CCANNNNNTGG 2 cut(s) 234, 651
PkrI GCNGC 6 cut(s) 173, 212, 258, 397, 559, 696
Ple19I CGATCG 1 cut(s) 316
PleI GAGTC 3 cut(s) 182, 212, 418
PluTI GGCGCC 1 cut(s) 162
PpsI GAGTC 3 cut(s) 182, 212, 418
Ppu21I YACGTR 2 cut(s) 688, 938
PshBI ATTAAT 1 cut(s) 873
Psp6I CCWGG 2 cut(s) 756, 954
PspGI CCWGG 2 cut(s) 756, 954
PspN4I GGNNCC 5 cut(s) 139, 160, 434, 465, 628
PspPI GGNCC 4 cut(s) 33, 246, 388, 464
PsuI RGATCY 1 cut(s) 290
PvuI CGATCG 1 cut(s) 316
RgaI GCGATCGC 1 cut(s) 316
RsaI GTAC 3 cut(s) 53, 936, 962
RsaNI GTAC 3 cut(s) 52, 935, 961
Rsr2I CGGWCCG 1 cut(s) 246
RsrII CGGWCCG 1 cut(s) 246
SaqAI TTAA 3 cut(s) 668, 852, 873
SatI GCNGC 6 cut(s) 172, 211, 257, 396, 558, 695
Sau3AI GATC 5 cut(s) 290, 313, 337, 733, 784
Sau96I GGNCC 4 cut(s) 33, 246, 388, 464
ScaI AGTACT 1 cut(s) 962
SchI GAGTC 3 cut(s) 182, 212, 419
ScrFI CCNGG 2 cut(s) 758, 956
SduI GDGCHC 1 cut(s) 435
SfaAI GCGATCGC 1 cut(s) 316
SfaNI GCATC 2 cut(s) 387, 751
SfoI GGCGCC 1 cut(s) 160
SgfI GCGATCGC 1 cut(s) 316
SinI GGWCC 2 cut(s) 246, 388
SnaBI TACGTA 1 cut(s) 938
SpeI ACTAGT 1 cut(s) 589
Sse9I AATT 2 cut(s) 536, 812
SsiI CCGC 4 cut(s) 213, 225, 396, 557
SspDI GGCGCC 1 cut(s) 158
SspMI CTAG 2 cut(s) 590, 660
StyD4I CCNGG 2 cut(s) 756, 954
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 2 cut(s) 850, 905
TaiI ACGT 6 cut(s) 108, 147, 180, 372, 690, 940
TaqI TCGA 1 cut(s) 297
TasI AATT 2 cut(s) 536, 812
TatI WGTACW 2 cut(s) 51, 960
TauI GCSGC 2 cut(s) 398, 560
TfiI GAWTC 5 cut(s) 10, 364, 508, 521, 969
Tru1I TTAA 3 cut(s) 668, 852, 873
Tru9I TTAA 3 cut(s) 668, 852, 873
TscAI CASTG 2 cut(s) 340, 429
TseFI GTSAC 3 cut(s) 566, 688, 772
TseI GCWGC 4 cut(s) 171, 210, 256, 694
Tsp45I GTSAC 3 cut(s) 566, 688, 772
TspDTI ATGAA 2 cut(s) 34, 334
TspGWI ACGGA 4 cut(s) 78, 283, 295, 403
TspRI CASTG 2 cut(s) 340, 429
Van91I CCANNNNNTGG 2 cut(s) 234, 651
VpaK11BI GGWCC 2 cut(s) 246, 388
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 1 cut(s) 812
XspI CTAG 2 cut(s) 590, 660
ZraI GACGTC 1 cut(s) 178
ZrmI AGTACT 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.