ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 388 |
| AciI | CCGC | 5 cut(s) | 197, 278, 386, 470, 793 |
| AclWI | GGATC | 2 cut(s) | 91, 720 |
| AcuI | CTGAAG | 1 cut(s) | 768 |
| AcyI | GRCGYC | 1 cut(s) | 100 |
| AfaI | GTAC | 1 cut(s) | 255 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 344 |
| AgsI | TTSAA | 2 cut(s) | 428, 550 |
| AjiI | CACGTC | 1 cut(s) | 587 |
| AjnI | CCWGG | 2 cut(s) | 293, 603 |
| AluBI | AGCT | 2 cut(s) | 374, 601 |
| AluI | AGCT | 2 cut(s) | 374, 601 |
| Alw26I | GTCTC | 1 cut(s) | 54 |
| AlwI | GGATC | 2 cut(s) | 91, 720 |
| AoxI | GGCC | 1 cut(s) | 798 |
| ApeKI | GCWGC | 1 cut(s) | 314 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 32, 64 |
| AspS9I | GGNCC | 3 cut(s) | 153, 439, 798 |
| AsuHPI | GGTGA | 2 cut(s) | 668, 764 |
| AsuII | TTCGAA | 1 cut(s) | 38 |
| AvaII | GGWCC | 2 cut(s) | 153, 439 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 491, 524 |
| BanI | GGYRCC | 1 cut(s) | 388 |
| BbvI | GCAGC | 1 cut(s) | 326 |
| BccI | CCATC | 4 cut(s) | 8, 336, 450, 471 |
| BceAI | ACGGC | 1 cut(s) | 361 |
| BciT130I | CCWGG | 2 cut(s) | 295, 605 |
| BclI | TGATCA | 1 cut(s) | 595 |
| BcoDI | GTCTC | 1 cut(s) | 54 |
| BfaI | CTAG | 1 cut(s) | 802 |
| BisI | GCNGC | 1 cut(s) | 315 |
| BlsI | GCNGC | 1 cut(s) | 316 |
| Bme1390I | CCNGG | 2 cut(s) | 295, 605 |
| Bme18I | GGWCC | 2 cut(s) | 153, 439 |
| BmgBI | CACGTC | 1 cut(s) | 587 |
| BmgT120I | GGNCC | 3 cut(s) | 153, 439, 798 |
| BmiI | GGNNCC | 2 cut(s) | 390, 440 |
| BmrFI | CCNGG | 2 cut(s) | 295, 605 |
| BmsI | GCATC | 1 cut(s) | 151 |
| BpmI | CTGGAG | 1 cut(s) | 587 |
| Bpu14I | TTCGAA | 1 cut(s) | 38 |
| BsaAI | YACGTR | 1 cut(s) | 257 |
| BsaHI | GRCGYC | 1 cut(s) | 100 |
| BsaJI | CCNNGG | 4 cut(s) | 191, 231, 343, 729 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 344 |
| Bse118I | RCCGGY | 2 cut(s) | 138, 391 |
| Bse1I | ACTGG | 3 cut(s) | 560, 699, 719 |
| BseBI | CCWGG | 2 cut(s) | 295, 605 |
| BseDI | CCNNGG | 4 cut(s) | 191, 231, 343, 729 |
| BseGI | GGATG | 2 cut(s) | 181, 482 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 344 |
| BseNI | ACTGG | 3 cut(s) | 560, 699, 719 |
| BseRI | GAGGAG | 1 cut(s) | 716 |
| BseXI | GCAGC | 1 cut(s) | 326 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| BshFI | GGCC | 1 cut(s) | 800 |
| BshNI | GGYRCC | 1 cut(s) | 388 |
| BsiSI | CCGG | 2 cut(s) | 139, 392 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 344 |
| BsmAI | GTCTC | 1 cut(s) | 54 |
| BsmBI | CGTCTC | 1 cut(s) | 54 |
| BsmI | GAATGC | 1 cut(s) | 712 |
| BsnI | GGCC | 1 cut(s) | 800 |
| Bsp119I | TTCGAA | 1 cut(s) | 38 |
| Bsp143I | GATC | 5 cut(s) | 83, 349, 595, 725, 754 |
| BspACI | CCGC | 5 cut(s) | 197, 278, 386, 470, 793 |
| BspANI | GGCC | 1 cut(s) | 800 |
| BspLI | GGNNCC | 2 cut(s) | 390, 440 |
| BspPI | GGATC | 2 cut(s) | 91, 720 |
| BspT104I | TTCGAA | 1 cut(s) | 38 |
| BspT107I | GGYRCC | 1 cut(s) | 388 |
| BsrFI | RCCGGY | 2 cut(s) | 138, 391 |
| BsrI | ACTGG | 3 cut(s) | 560, 699, 719 |
| BssAI | RCCGGY | 2 cut(s) | 138, 391 |
| BssECI | CCNNGG | 4 cut(s) | 191, 231, 343, 729 |
| BssMI | GATC | 5 cut(s) | 83, 349, 595, 725, 754 |
| BssNI | GRCGYC | 1 cut(s) | 100 |
| BssT1I | CCWWGG | 2 cut(s) | 191, 729 |
| Bst2UI | CCWGG | 2 cut(s) | 295, 605 |
| Bst6I | CTCTTC | 1 cut(s) | 693 |
| BstACI | GRCGYC | 1 cut(s) | 100 |
| BstBAI | YACGTR | 1 cut(s) | 257 |
| BstBI | TTCGAA | 1 cut(s) | 38 |
| BstDEI | CTNAG | 1 cut(s) | 765 |
| BstDSI | CCRYGG | 2 cut(s) | 231, 343 |
| BstF5I | GGATG | 2 cut(s) | 181, 482 |
| BstKTI | GATC | 5 cut(s) | 86, 352, 598, 728, 757 |
| BstMAI | GTCTC | 1 cut(s) | 54 |
| BstMBI | GATC | 5 cut(s) | 83, 349, 595, 725, 754 |
| BstNI | CCWGG | 2 cut(s) | 295, 605 |
| BstSCI | CCNGG | 2 cut(s) | 293, 603 |
| BstSNI | TACGTA | 1 cut(s) | 257 |
| BstV1I | GCAGC | 1 cut(s) | 326 |
| BstX2I | RGATCY | 1 cut(s) | 83 |
| BstYI | RGATCY | 1 cut(s) | 83 |
| BsuRI | GGCC | 1 cut(s) | 800 |
| BtgI | CCRYGG | 2 cut(s) | 231, 343 |
| BtgZI | GCGATG | 1 cut(s) | 761 |
| BtrI | CACGTC | 1 cut(s) | 587 |
| BtsCI | GGATG | 2 cut(s) | 181, 482 |
| BtsI | GCAGTG | 1 cut(s) | 129 |
| BtsIMutI | CAGTG | 2 cut(s) | 129, 744 |
| Cfr10I | RCCGGY | 2 cut(s) | 138, 391 |
| Cfr13I | GGNCC | 3 cut(s) | 153, 439, 798 |
| CseI | GACGC | 2 cut(s) | 89, 421 |
| CsiI | ACCWGGT | 1 cut(s) | 293 |
| Csp6I | GTAC | 1 cut(s) | 254 |
| CviAII | CATG | 4 cut(s) | 53, 96, 227, 353 |
| CviJI | RGCY | 7 cut(s) | 11, 268, 284, 374, 601, 785, 800 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 268, 284, 374, 601, 785, 800 |
| CviQI | GTAC | 1 cut(s) | 254 |
| DdeI | CTNAG | 1 cut(s) | 765 |
| DpnI | GATC | 5 cut(s) | 85, 351, 597, 727, 756 |
| DpnII | GATC | 5 cut(s) | 83, 349, 595, 725, 754 |
| Eam1104I | CTCTTC | 1 cut(s) | 693 |
| EarI | CTCTTC | 1 cut(s) | 693 |
| EciI | GGCGGA | 1 cut(s) | 485 |
| Eco105I | TACGTA | 1 cut(s) | 257 |
| Eco130I | CCWWGG | 2 cut(s) | 191, 729 |
| Eco32I | GATATC | 2 cut(s) | 25, 304 |
| Eco47I | GGWCC | 2 cut(s) | 153, 439 |
| Eco57I | CTGAAG | 1 cut(s) | 768 |
| EcoO109I | RGGNCCY | 1 cut(s) | 798 |
| EcoRII | CCWGG | 2 cut(s) | 293, 603 |
| EcoRV | GATATC | 2 cut(s) | 25, 304 |
| EcoT14I | CCWWGG | 2 cut(s) | 191, 729 |
| ErhI | CCWWGG | 2 cut(s) | 191, 729 |
| Esp3I | CGTCTC | 1 cut(s) | 54 |
| FaeI | CATG | 4 cut(s) | 56, 99, 230, 356 |
| FaiI | YATR | 8 cut(s) | 54, 97, 117, 212, 228, 354, 506, 530 |
| FatI | CATG | 4 cut(s) | 52, 95, 226, 352 |
| FbaI | TGATCA | 1 cut(s) | 595 |
| Fnu4HI | GCNGC | 1 cut(s) | 315 |
| FokI | GGATG | 2 cut(s) | 188, 489 |
| Fsp4HI | GCNGC | 1 cut(s) | 315 |
| FspBI | CTAG | 1 cut(s) | 802 |
| GluI | GCNGC | 1 cut(s) | 315 |
| GsuI | CTGGAG | 1 cut(s) | 587 |
| HaeIII | GGCC | 1 cut(s) | 800 |
| HapII | CCGG | 2 cut(s) | 139, 392 |
| HgaI | GACGC | 2 cut(s) | 89, 421 |
| Hin1I | GRCGYC | 1 cut(s) | 100 |
| Hin1II | CATG | 4 cut(s) | 56, 99, 230, 356 |
| HincII | GTYRAC | 1 cut(s) | 58 |
| HindII | GTYRAC | 1 cut(s) | 58 |
| HinfI | GANTC | 5 cut(s) | 121, 179, 629, 649, 667 |
| HpaII | CCGG | 2 cut(s) | 139, 392 |
| HphI | GGTGA | 2 cut(s) | 668, 764 |
| Hpy166II | GTNNAC | 3 cut(s) | 58, 291, 744 |
| Hpy188I | TCNGA | 8 cut(s) | 79, 105, 301, 459, 581, 628, 759, 790 |
| Hpy188III | TCNNGA | 1 cut(s) | 449 |
| Hpy8I | GTNNAC | 3 cut(s) | 58, 291, 744 |
| Hpy99I | CGWCG | 1 cut(s) | 49 |
| HpyAV | CCTTC | 3 cut(s) | 232, 257, 743 |
| HpyCH4IV | ACGT | 3 cut(s) | 256, 287, 586 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 314, 616 |
| HpyF3I | CTNAG | 1 cut(s) | 765 |
| HpySE526I | ACGT | 3 cut(s) | 256, 287, 586 |
| Hsp92I | GRCGYC | 1 cut(s) | 100 |
| Hsp92II | CATG | 4 cut(s) | 56, 99, 230, 356 |
| Ksp22I | TGATCA | 1 cut(s) | 595 |
| Kzo9I | GATC | 5 cut(s) | 83, 349, 595, 725, 754 |
| LmnI | GCTCC | 1 cut(s) | 606 |
| Lsp1109I | GCAGC | 1 cut(s) | 326 |
| LweI | GCATC | 1 cut(s) | 151 |
| MabI | ACCWGGT | 1 cut(s) | 293 |
| MaeI | CTAG | 1 cut(s) | 802 |
| MaeII | ACGT | 3 cut(s) | 256, 287, 586 |
| MaeIII | GTNAC | 3 cut(s) | 127, 690, 733 |
| MalI | GATC | 5 cut(s) | 85, 351, 597, 727, 756 |
| MboI | GATC | 5 cut(s) | 83, 349, 595, 725, 754 |
| MboII | GAAGA | 2 cut(s) | 215, 710 |
| MflI | RGATCY | 1 cut(s) | 83 |
| MluCI | AATT | 1 cut(s) | 525 |
| MlyI | GAGTC | 1 cut(s) | 676 |
| MmeI | TCCRAC | 1 cut(s) | 663 |
| MnlI | CCTC | 6 cut(s) | 58, 235, 466, 575, 694, 796 |
| MseI | TTAA | 1 cut(s) | 399 |
| MspI | CCGG | 2 cut(s) | 139, 392 |
| MspR9I | CCNGG | 2 cut(s) | 295, 605 |
| Mva1269I | GAATGC | 1 cut(s) | 712 |
| MvaI | CCWGG | 2 cut(s) | 295, 605 |
| NdeII | GATC | 5 cut(s) | 83, 349, 595, 725, 754 |
| NlaIII | CATG | 4 cut(s) | 56, 99, 230, 356 |
| NlaIV | GGNNCC | 2 cut(s) | 390, 440 |
| NmuCI | GTSAC | 1 cut(s) | 127 |
| NspV | TTCGAA | 1 cut(s) | 38 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 44 |
| PctI | GAATGC | 1 cut(s) | 712 |
| PfeI | GAWTC | 4 cut(s) | 121, 179, 629, 649 |
| PkrI | GCNGC | 1 cut(s) | 316 |
| PleI | GAGTC | 1 cut(s) | 675 |
| PpsI | GAGTC | 1 cut(s) | 675 |
| Ppu21I | YACGTR | 1 cut(s) | 257 |
| Psp6I | CCWGG | 2 cut(s) | 293, 603 |
| PspGI | CCWGG | 2 cut(s) | 293, 603 |
| PspN4I | GGNNCC | 2 cut(s) | 390, 440 |
| PspPI | GGNCC | 3 cut(s) | 153, 439, 798 |
| PsuI | RGATCY | 1 cut(s) | 83 |
| RsaI | GTAC | 1 cut(s) | 255 |
| RsaNI | GTAC | 1 cut(s) | 254 |
| SaqAI | TTAA | 1 cut(s) | 399 |
| SatI | GCNGC | 1 cut(s) | 315 |
| Sau3AI | GATC | 5 cut(s) | 83, 349, 595, 725, 754 |
| Sau96I | GGNCC | 3 cut(s) | 153, 439, 798 |
| SchI | GAGTC | 1 cut(s) | 676 |
| ScrFI | CCNGG | 2 cut(s) | 295, 605 |
| SexAI | ACCWGGT | 1 cut(s) | 293 |
| SfaNI | GCATC | 1 cut(s) | 151 |
| SfuI | TTCGAA | 1 cut(s) | 38 |
| SinI | GGWCC | 2 cut(s) | 153, 439 |
| SnaBI | TACGTA | 1 cut(s) | 257 |
| Sse9I | AATT | 1 cut(s) | 525 |
| SsiI | CCGC | 5 cut(s) | 197, 278, 386, 470, 793 |
| SspMI | CTAG | 1 cut(s) | 802 |
| StyD4I | CCNGG | 2 cut(s) | 293, 603 |
| StyI | CCWWGG | 2 cut(s) | 191, 729 |
| TaiI | ACGT | 3 cut(s) | 259, 290, 589 |
| TaqI | TCGA | 2 cut(s) | 38, 488 |
| TasI | AATT | 1 cut(s) | 525 |
| TfiI | GAWTC | 4 cut(s) | 121, 179, 629, 649 |
| Tru1I | TTAA | 1 cut(s) | 399 |
| Tru9I | TTAA | 1 cut(s) | 399 |
| TscAI | CASTG | 2 cut(s) | 136, 751 |
| TseFI | GTSAC | 1 cut(s) | 127 |
| TseI | GCWGC | 1 cut(s) | 314 |
| Tsp45I | GTSAC | 1 cut(s) | 127 |
| TspDTI | ATGAA | 5 cut(s) | 192, 215, 227, 545, 764 |
| TspGWI | ACGGA | 2 cut(s) | 96, 248 |
| TspRI | CASTG | 2 cut(s) | 136, 751 |
| VpaK11BI | GGWCC | 2 cut(s) | 153, 439 |
| XspI | CTAG | 1 cut(s) | 802 |