ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 6 |
| AciI | CCGC | 3 cut(s) | 75, 137, 298 |
| AclWI | GGATC | 1 cut(s) | 180 |
| AcuI | CTGAAG | 1 cut(s) | 504 |
| AfaI | GTAC | 1 cut(s) | 506 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 167 |
| AgsI | TTSAA | 1 cut(s) | 286 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 74, 106, 533, 565 |
| AluBI | AGCT | 1 cut(s) | 536 |
| AluI | AGCT | 1 cut(s) | 536 |
| Alw21I | GWGCWC | 1 cut(s) | 208 |
| AlwI | GGATC | 1 cut(s) | 180 |
| AoxI | GGCC | 1 cut(s) | 300 |
| ApeKI | GCWGC | 4 cut(s) | 101, 104, 295, 388 |
| AspLEI | GCGC | 2 cut(s) | 6, 19 |
| AspS9I | GGNCC | 3 cut(s) | 124, 300, 462 |
| AsuHPI | GGTGA | 1 cut(s) | 503 |
| AvaII | GGWCC | 2 cut(s) | 124, 462 |
| BbsI | GAAGAC | 1 cut(s) | 402 |
| Bbv12I | GWGCWC | 1 cut(s) | 208 |
| BbvI | GCAGC | 4 cut(s) | 113, 116, 307, 400 |
| BccI | CCATC | 1 cut(s) | 322 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 90, 124 |
| BfaI | CTAG | 1 cut(s) | 141 |
| BisI | GCNGC | 5 cut(s) | 102, 105, 138, 296, 389 |
| BlpI | GCTNAGC | 1 cut(s) | 438 |
| BlsI | GCNGC | 5 cut(s) | 103, 106, 139, 297, 390 |
| BmcAI | AGTACT | 1 cut(s) | 506 |
| Bme18I | GGWCC | 2 cut(s) | 124, 462 |
| BmgT120I | GGNCC | 3 cut(s) | 124, 300, 462 |
| BmsI | GCATC | 2 cut(s) | 122, 530 |
| BpiI | GAAGAC | 1 cut(s) | 402 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 438 |
| BsaAI | YACGTR | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 1 cut(s) | 465 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 167 |
| Bse1I | ACTGG | 2 cut(s) | 423, 581 |
| BseDI | CCNNGG | 1 cut(s) | 465 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 167 |
| BseMII | CTCAG | 2 cut(s) | 182, 429 |
| BseNI | ACTGG | 2 cut(s) | 423, 581 |
| BseXI | GCAGC | 4 cut(s) | 113, 116, 307, 400 |
| BsgI | GTGCAG | 1 cut(s) | 407 |
| Bsh1236I | CGCG | 1 cut(s) | 6 |
| Bsh1285I | CGRYCG | 1 cut(s) | 493 |
| BshFI | GGCC | 1 cut(s) | 302 |
| BsiEI | CGRYCG | 1 cut(s) | 493 |
| BsiHKAI | GWGCWC | 1 cut(s) | 208 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 167 |
| BsnI | GGCC | 1 cut(s) | 302 |
| Bsp1286I | GDGCHC | 1 cut(s) | 208 |
| Bsp143I | GATC | 3 cut(s) | 34, 172, 490 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 438 |
| BspACI | CCGC | 3 cut(s) | 75, 137, 298 |
| BspANI | GGCC | 1 cut(s) | 302 |
| BspCNI | CTCAG | 2 cut(s) | 183, 430 |
| BspFNI | CGCG | 1 cut(s) | 6 |
| BspPI | GGATC | 1 cut(s) | 180 |
| BspQI | GCTCTTC | 1 cut(s) | 526 |
| BsrI | ACTGG | 2 cut(s) | 423, 581 |
| BssECI | CCNNGG | 1 cut(s) | 465 |
| BssMI | GATC | 3 cut(s) | 34, 172, 490 |
| BssT1I | CCWWGG | 1 cut(s) | 465 |
| Bst4CI | ACNGT | 1 cut(s) | 515 |
| Bst6I | CTCTTC | 1 cut(s) | 526 |
| BstBAI | YACGTR | 1 cut(s) | 341 |
| BstC8I | GCNNGC | 1 cut(s) | 300 |
| BstDEI | CTNAG | 3 cut(s) | 191, 438, 537 |
| BstFNI | CGCG | 1 cut(s) | 6 |
| BstHHI | GCGC | 2 cut(s) | 6, 19 |
| BstKTI | GATC | 3 cut(s) | 37, 175, 493 |
| BstMBI | GATC | 3 cut(s) | 34, 172, 490 |
| BstMCI | CGRYCG | 1 cut(s) | 493 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 110 |
| BstSNI | TACGTA | 1 cut(s) | 341 |
| BstUI | CGCG | 1 cut(s) | 6 |
| BstV1I | GCAGC | 4 cut(s) | 113, 116, 307, 400 |
| BstV2I | GAAGAC | 1 cut(s) | 402 |
| BsuRI | GGCC | 1 cut(s) | 302 |
| BtgZI | GCGATG | 1 cut(s) | 21 |
| BtsI | GCAGTG | 1 cut(s) | 212 |
| BtsIMutI | CAGTG | 1 cut(s) | 212 |
| Cac8I | GCNNGC | 1 cut(s) | 300 |
| CfoI | GCGC | 2 cut(s) | 6, 19 |
| Cfr13I | GGNCC | 3 cut(s) | 124, 300, 462 |
| CseI | GACGC | 1 cut(s) | 96 |
| Csp6I | GTAC | 1 cut(s) | 505 |
| CviAII | CATG | 4 cut(s) | 32, 117, 167, 474 |
| CviJI | RGCY | 5 cut(s) | 140, 302, 349, 536, 555 |
| CviKI_1 | RGCY | 5 cut(s) | 140, 302, 349, 536, 555 |
| CviQI | GTAC | 1 cut(s) | 505 |
| DdeI | CTNAG | 3 cut(s) | 191, 438, 537 |
| DpnI | GATC | 3 cut(s) | 36, 174, 492 |
| DpnII | GATC | 3 cut(s) | 34, 172, 490 |
| Eam1104I | CTCTTC | 1 cut(s) | 526 |
| EarI | CTCTTC | 1 cut(s) | 526 |
| Eco105I | TACGTA | 1 cut(s) | 341 |
| Eco130I | CCWWGG | 1 cut(s) | 465 |
| Eco47I | GGWCC | 2 cut(s) | 124, 462 |
| Eco57I | CTGAAG | 1 cut(s) | 504 |
| EcoT14I | CCWWGG | 1 cut(s) | 465 |
| EcoT22I | ATGCAT | 1 cut(s) | 270 |
| ErhI | CCWWGG | 1 cut(s) | 465 |
| FaeI | CATG | 4 cut(s) | 35, 120, 170, 477 |
| FaiI | YATR | 8 cut(s) | 24, 33, 118, 168, 266, 270, 444, 475 |
| FatI | CATG | 4 cut(s) | 31, 116, 166, 473 |
| FauI | CCCGC | 1 cut(s) | 291 |
| Fnu4HI | GCNGC | 5 cut(s) | 102, 105, 138, 296, 389 |
| Fsp4HI | GCNGC | 5 cut(s) | 102, 105, 138, 296, 389 |
| FspBI | CTAG | 1 cut(s) | 141 |
| GlaI | GCGC | 2 cut(s) | 5, 18 |
| GluI | GCNGC | 5 cut(s) | 102, 105, 138, 296, 389 |
| HaeIII | GGCC | 1 cut(s) | 302 |
| HgaI | GACGC | 1 cut(s) | 96 |
| HhaI | GCGC | 2 cut(s) | 6, 19 |
| Hin1II | CATG | 4 cut(s) | 35, 120, 170, 477 |
| Hin6I | GCGC | 2 cut(s) | 4, 17 |
| HinP1I | GCGC | 2 cut(s) | 4, 17 |
| HincII | GTYRAC | 1 cut(s) | 480 |
| HindII | GTYRAC | 1 cut(s) | 480 |
| HinfI | GANTC | 4 cut(s) | 163, 245, 286, 526 |
| HphI | GGTGA | 1 cut(s) | 503 |
| Hpy166II | GTNNAC | 3 cut(s) | 60, 124, 480 |
| Hpy188I | TCNGA | 1 cut(s) | 379 |
| Hpy188III | TCNNGA | 1 cut(s) | 190 |
| Hpy8I | GTNNAC | 3 cut(s) | 60, 124, 480 |
| Hpy99I | CGWCG | 1 cut(s) | 112 |
| HpyAV | CCTTC | 1 cut(s) | 479 |
| HpyCH4III | ACNGT | 1 cut(s) | 515 |
| HpyCH4IV | ACGT | 1 cut(s) | 340 |
| HpyCH4V | TGCA | 3 cut(s) | 31, 268, 388 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 110 |
| HpyF3I | CTNAG | 3 cut(s) | 191, 438, 537 |
| HpySE526I | ACGT | 1 cut(s) | 340 |
| Hsp92II | CATG | 4 cut(s) | 35, 120, 170, 477 |
| HspAI | GCGC | 2 cut(s) | 4, 17 |
| Kzo9I | GATC | 3 cut(s) | 34, 172, 490 |
| LguI | GCTCTTC | 1 cut(s) | 526 |
| Lsp1109I | GCAGC | 4 cut(s) | 113, 116, 307, 400 |
| LweI | GCATC | 2 cut(s) | 122, 530 |
| MaeI | CTAG | 1 cut(s) | 141 |
| MaeII | ACGT | 1 cut(s) | 340 |
| MaeIII | GTNAC | 1 cut(s) | 469 |
| MalI | GATC | 3 cut(s) | 36, 174, 492 |
| MboI | GATC | 3 cut(s) | 34, 172, 490 |
| MboII | GAAGA | 2 cut(s) | 402, 543 |
| MhlI | GDGCHC | 1 cut(s) | 208 |
| MluCI | AATT | 1 cut(s) | 183 |
| MmeI | TCCRAC | 1 cut(s) | 72 |
| MnlI | CCTC | 2 cut(s) | 65, 315 |
| Mph1103I | ATGCAT | 1 cut(s) | 270 |
| MseI | TTAA | 1 cut(s) | 431 |
| MspA1I | CMGCKG | 1 cut(s) | 298 |
| MvnI | CGCG | 1 cut(s) | 6 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 110 |
| NdeII | GATC | 3 cut(s) | 34, 172, 490 |
| NlaIII | CATG | 4 cut(s) | 35, 120, 170, 477 |
| NsiI | ATGCAT | 1 cut(s) | 270 |
| PciSI | GCTCTTC | 1 cut(s) | 526 |
| PfeI | GAWTC | 4 cut(s) | 163, 245, 286, 526 |
| PkrI | GCNGC | 5 cut(s) | 103, 106, 139, 297, 390 |
| Ple19I | CGATCG | 1 cut(s) | 493 |
| Ppu21I | YACGTR | 1 cut(s) | 341 |
| PspPI | GGNCC | 3 cut(s) | 124, 300, 462 |
| PvuI | CGATCG | 1 cut(s) | 493 |
| RsaI | GTAC | 1 cut(s) | 506 |
| RsaNI | GTAC | 1 cut(s) | 505 |
| SapI | GCTCTTC | 1 cut(s) | 526 |
| SaqAI | TTAA | 1 cut(s) | 431 |
| SatI | GCNGC | 5 cut(s) | 102, 105, 138, 296, 389 |
| Sau3AI | GATC | 3 cut(s) | 34, 172, 490 |
| Sau96I | GGNCC | 3 cut(s) | 124, 300, 462 |
| ScaI | AGTACT | 1 cut(s) | 506 |
| SduI | GDGCHC | 1 cut(s) | 208 |
| SetI | ASST | 8 cut(s) | 129, 308, 320, 343, 464, 471, 538, 548 |
| SfaNI | GCATC | 2 cut(s) | 122, 530 |
| SinI | GGWCC | 2 cut(s) | 124, 462 |
| SnaBI | TACGTA | 1 cut(s) | 341 |
| Sse9I | AATT | 1 cut(s) | 183 |
| SsiI | CCGC | 3 cut(s) | 75, 137, 298 |
| SspMI | CTAG | 1 cut(s) | 141 |
| StyI | CCWWGG | 1 cut(s) | 465 |
| TaaI | ACNGT | 1 cut(s) | 515 |
| TaiI | ACGT | 1 cut(s) | 343 |
| TaqI | TCGA | 2 cut(s) | 524, 529 |
| TasI | AATT | 1 cut(s) | 183 |
| TatI | WGTACW | 1 cut(s) | 504 |
| TauI | GCSGC | 1 cut(s) | 140 |
| TfiI | GAWTC | 4 cut(s) | 163, 245, 286, 526 |
| Tru1I | TTAA | 1 cut(s) | 431 |
| Tru9I | TTAA | 1 cut(s) | 431 |
| TscAI | CASTG | 1 cut(s) | 219 |
| TseI | GCWGC | 4 cut(s) | 101, 104, 295, 388 |
| TspDTI | ATGAA | 2 cut(s) | 155, 237 |
| TspGWI | ACGGA | 1 cut(s) | 45 |
| TspRI | CASTG | 1 cut(s) | 219 |
| VpaK11BI | GGWCC | 2 cut(s) | 124, 462 |
| XspI | CTAG | 1 cut(s) | 141 |
| ZrmI | AGTACT | 1 cut(s) | 506 |
| Zsp2I | ATGCAT | 1 cut(s) | 270 |