Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 390 - 512 | 2.1e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 319 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 654 |
| Acc36I | ACCTGC | 3 cut(s) | 316, 319, 1298 |
| AccB1I | GGYRCC | 1 cut(s) | 1138 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1151 |
| AccI | GTMKAC | 1 cut(s) | 658 |
| AciI | CCGC | 1 cut(s) | 1142 |
| AclWI | GGATC | 2 cut(s) | 611, 815 |
| AcsI | RAATTY | 4 cut(s) | 60, 227, 1168, 1468 |
| AfaI | GTAC | 3 cut(s) | 473, 1039, 1192 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1151, 1246 |
| AgeI | ACCGGT | 1 cut(s) | 1040 |
| AgsI | TTSAA | 5 cut(s) | 349, 545, 704, 743, 1364 |
| AjnI | CCWGG | 2 cut(s) | 635, 1239 |
| Alw26I | GTCTC | 2 cut(s) | 93, 1114 |
| AlwI | GGATC | 2 cut(s) | 611, 815 |
| Ama87I | CYCGRG | 1 cut(s) | 549 |
| ApeKI | GCWGC | 2 cut(s) | 125, 868 |
| ApoI | RAATTY | 4 cut(s) | 60, 227, 1168, 1468 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 52, 84 |
| AsiGI | ACCGGT | 1 cut(s) | 1040 |
| AspS9I | GGNCC | 3 cut(s) | 186, 733, 757 |
| AsuC2I | CCSGG | 1 cut(s) | 951 |
| AsuHPI | GGTGA | 4 cut(s) | 224, 260, 343, 599 |
| AsuII | TTCGAA | 1 cut(s) | 461 |
| AvaI | CYCGRG | 1 cut(s) | 549 |
| AvaII | GGWCC | 3 cut(s) | 186, 733, 757 |
| BanI | GGYRCC | 1 cut(s) | 1138 |
| BbsI | GAAGAC | 2 cut(s) | 93, 1045 |
| BbvI | GCAGC | 2 cut(s) | 112, 880 |
| BccI | CCATC | 2 cut(s) | 729, 1169 |
| BciT130I | CCWGG | 2 cut(s) | 637, 1241 |
| BciVI | GTATCC | 1 cut(s) | 618 |
| BcnI | CCSGG | 1 cut(s) | 951 |
| BcoDI | GTCTC | 2 cut(s) | 93, 1114 |
| BfaI | CTAG | 3 cut(s) | 113, 468, 767 |
| BfuAI | ACCTGC | 3 cut(s) | 316, 319, 1298 |
| BfuI | GTATCC | 1 cut(s) | 618 |
| BglII | AGATCT | 1 cut(s) | 442 |
| BisI | GCNGC | 3 cut(s) | 126, 869, 1142 |
| BlsI | GCNGC | 3 cut(s) | 127, 870, 1143 |
| BmcAI | AGTACT | 1 cut(s) | 1192 |
| Bme1390I | CCNGG | 3 cut(s) | 637, 951, 1241 |
| Bme18I | GGWCC | 3 cut(s) | 186, 733, 757 |
| BmeT110I | CYCGRG | 1 cut(s) | 549 |
| BmgT120I | GGNCC | 3 cut(s) | 186, 733, 757 |
| BmiI | GGNNCC | 2 cut(s) | 1140, 1180 |
| BmrFI | CCNGG | 3 cut(s) | 637, 951, 1241 |
| BmrI | ACTGGG | 1 cut(s) | 1346 |
| BmsI | GCATC | 1 cut(s) | 1351 |
| BmuI | ACTGGG | 1 cut(s) | 1346 |
| BpiI | GAAGAC | 2 cut(s) | 93, 1045 |
| BpmI | CTGGAG | 1 cut(s) | 994 |
| Bpu14I | TTCGAA | 1 cut(s) | 461 |
| BpuMI | CCSGG | 1 cut(s) | 951 |
| BsaJI | CCNNGG | 5 cut(s) | 416, 620, 635, 636, 1239 |
| BsaWI | WCCGGW | 1 cut(s) | 1040 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1206, 1236 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1151, 1246 |
| Bse118I | RCCGGY | 1 cut(s) | 1040 |
| Bse1I | ACTGG | 3 cut(s) | 280, 1352, 1386 |
| Bse3DI | GCAATG | 1 cut(s) | 670 |
| BseBI | CCWGG | 2 cut(s) | 637, 1241 |
| BseDI | CCNNGG | 5 cut(s) | 416, 620, 635, 636, 1239 |
| BseGI | GGATG | 3 cut(s) | 619, 1035, 1234 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1151, 1246 |
| BseMI | GCAATG | 1 cut(s) | 670 |
| BseMII | CTCAG | 6 cut(s) | 198, 303, 644, 1061, 1452, 1460 |
| BseNI | ACTGG | 3 cut(s) | 280, 1352, 1386 |
| BseRI | GAGGAG | 2 cut(s) | 498, 1563 |
| BseXI | GCAGC | 2 cut(s) | 112, 880 |
| Bsh1285I | CGRYCG | 1 cut(s) | 848 |
| BshNI | GGYRCC | 1 cut(s) | 1138 |
| BshTI | ACCGGT | 1 cut(s) | 1040 |
| BsiEI | CGRYCG | 1 cut(s) | 848 |
| BsiHKCI | CYCGRG | 1 cut(s) | 549 |
| BsiSI | CCGG | 2 cut(s) | 950, 1041 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1151, 1246 |
| BsmAI | GTCTC | 2 cut(s) | 93, 1114 |
| BsmI | GAATGC | 2 cut(s) | 469, 721 |
| BsoBI | CYCGRG | 1 cut(s) | 549 |
| Bsp119I | TTCGAA | 1 cut(s) | 461 |
| Bsp143I | GATC | 6 cut(s) | 442, 616, 820, 845, 1016, 1088 |
| BspACI | CCGC | 1 cut(s) | 1142 |
| BspCNI | CTCAG | 6 cut(s) | 199, 304, 645, 1060, 1453, 1459 |
| BspLI | GGNNCC | 2 cut(s) | 1140, 1180 |
| BspMI | ACCTGC | 3 cut(s) | 316, 319, 1298 |
| BspPI | GGATC | 2 cut(s) | 611, 815 |
| BspQI | GCTCTTC | 1 cut(s) | 250 |
| BspT104I | TTCGAA | 1 cut(s) | 461 |
| BspT107I | GGYRCC | 1 cut(s) | 1138 |
| BsrDI | GCAATG | 1 cut(s) | 670 |
| BsrFI | RCCGGY | 1 cut(s) | 1040 |
| BsrI | ACTGG | 3 cut(s) | 280, 1352, 1386 |
| BssAI | RCCGGY | 1 cut(s) | 1040 |
| BssECI | CCNNGG | 5 cut(s) | 416, 620, 635, 636, 1239 |
| BssMI | GATC | 6 cut(s) | 442, 616, 820, 845, 1016, 1088 |
| BssT1I | CCWWGG | 1 cut(s) | 620 |
| Bst2UI | CCWGG | 2 cut(s) | 637, 1241 |
| Bst4CI | ACNGT | 2 cut(s) | 700, 1202 |
| Bst6I | CTCTTC | 5 cut(s) | 250, 920, 1112, 1352, 1609 |
| BstBI | TTCGAA | 1 cut(s) | 461 |
| BstC8I | GCNNGC | 4 cut(s) | 606, 1389, 1452, 1567 |
| BstDEI | CTNAG | 8 cut(s) | 207, 312, 338, 653, 779, 1047, 1446, 1461 |
| BstF5I | GGATG | 3 cut(s) | 619, 1035, 1234 |
| BstKTI | GATC | 6 cut(s) | 445, 619, 823, 848, 1019, 1091 |
| BstMAI | GTCTC | 2 cut(s) | 93, 1114 |
| BstMBI | GATC | 6 cut(s) | 442, 616, 820, 845, 1016, 1088 |
| BstMCI | CGRYCG | 1 cut(s) | 848 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1532 |
| BstNI | CCWGG | 2 cut(s) | 637, 1241 |
| BstNSI | RCATGY | 4 cut(s) | 125, 528, 608, 1454 |
| BstSCI | CCNGG | 3 cut(s) | 635, 949, 1239 |
| BstV1I | GCAGC | 2 cut(s) | 112, 880 |
| BstV2I | GAAGAC | 2 cut(s) | 93, 1045 |
| BstX2I | RGATCY | 1 cut(s) | 442 |
| BstYI | RGATCY | 1 cut(s) | 442 |
| BsuI | GTATCC | 1 cut(s) | 618 |
| BtsCI | GGATG | 3 cut(s) | 619, 1035, 1234 |
| BtsI | GCAGTG | 1 cut(s) | 1549 |
| BtsIMutI | CAGTG | 4 cut(s) | 204, 273, 1359, 1549 |
| BveI | ACCTGC | 3 cut(s) | 316, 319, 1298 |
| Cac8I | GCNNGC | 4 cut(s) | 606, 1389, 1452, 1567 |
| Cfr10I | RCCGGY | 1 cut(s) | 1040 |
| Cfr13I | GGNCC | 3 cut(s) | 186, 733, 757 |
| CseI | GACGC | 1 cut(s) | 669 |
| Csp6I | GTAC | 3 cut(s) | 472, 1038, 1191 |
| CspAI | ACCGGT | 1 cut(s) | 1040 |
| CviQI | GTAC | 3 cut(s) | 472, 1038, 1191 |
| DdeI | CTNAG | 8 cut(s) | 207, 312, 338, 653, 779, 1047, 1446, 1461 |
| DpnI | GATC | 6 cut(s) | 444, 618, 822, 847, 1018, 1090 |
| DpnII | GATC | 6 cut(s) | 442, 616, 820, 845, 1016, 1088 |
| DraI | TTTAAA | 1 cut(s) | 9 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 654 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 654 |
| Eam1104I | CTCTTC | 5 cut(s) | 250, 920, 1112, 1352, 1609 |
| EarI | CTCTTC | 5 cut(s) | 250, 920, 1112, 1352, 1609 |
| Eco130I | CCWWGG | 1 cut(s) | 620 |
| Eco47I | GGWCC | 3 cut(s) | 186, 733, 757 |
| Eco88I | CYCGRG | 1 cut(s) | 549 |
| EcoRII | CCWGG | 2 cut(s) | 635, 1239 |
| EcoT14I | CCWWGG | 1 cut(s) | 620 |
| ErhI | CCWWGG | 1 cut(s) | 620 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 13, 45 |
| FauNDI | CATATG | 1 cut(s) | 387 |
| FblI | GTMKAC | 1 cut(s) | 658 |
| Fnu4HI | GCNGC | 3 cut(s) | 126, 869, 1142 |
| FokI | GGATG | 3 cut(s) | 626, 1042, 1241 |
| Fsp4HI | GCNGC | 3 cut(s) | 126, 869, 1142 |
| FspBI | CTAG | 3 cut(s) | 113, 468, 767 |
| GluI | GCNGC | 3 cut(s) | 126, 869, 1142 |
| GsuI | CTGGAG | 1 cut(s) | 994 |
| HapII | CCGG | 2 cut(s) | 950, 1041 |
| HgaI | GACGC | 1 cut(s) | 669 |
| HincII | GTYRAC | 1 cut(s) | 659 |
| HindII | GTYRAC | 1 cut(s) | 659 |
| HinfI | GANTC | 8 cut(s) | 334, 403, 655, 881, 1033, 1364, 1415, 1499 |
| HpaII | CCGG | 2 cut(s) | 950, 1041 |
| HphI | GGTGA | 4 cut(s) | 224, 260, 343, 599 |
| Hpy166II | GTNNAC | 4 cut(s) | 659, 757, 1279, 1325 |
| Hpy188I | TCNGA | 6 cut(s) | 367, 647, 654, 825, 1369, 1377 |
| Hpy188III | TCNNGA | 5 cut(s) | 113, 551, 973, 1129, 1403 |
| Hpy8I | GTNNAC | 4 cut(s) | 659, 757, 1279, 1325 |
| Hpy99I | CGWCG | 2 cut(s) | 663, 789 |
| HpyAV | CCTTC | 3 cut(s) | 140, 528, 897 |
| HpyCH4III | ACNGT | 2 cut(s) | 700, 1202 |
| HpyCH4V | TGCA | 6 cut(s) | 128, 391, 604, 1342, 1387, 1588 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1532 |
| HpyF3I | CTNAG | 8 cut(s) | 207, 312, 338, 653, 779, 1047, 1446, 1461 |
| Kzo9I | GATC | 6 cut(s) | 442, 616, 820, 845, 1016, 1088 |
| LguI | GCTCTTC | 1 cut(s) | 250 |
| LmnI | GCTCC | 4 cut(s) | 325, 382, 505, 1178 |
| Lsp1109I | GCAGC | 2 cut(s) | 112, 880 |
| LweI | GCATC | 1 cut(s) | 1351 |
| MaeI | CTAG | 3 cut(s) | 113, 468, 767 |
| MaeIII | GTNAC | 3 cut(s) | 25, 587, 674 |
| MalI | GATC | 6 cut(s) | 444, 618, 822, 847, 1018, 1090 |
| MboI | GATC | 6 cut(s) | 442, 616, 820, 845, 1016, 1088 |
| MfeI | CAATTG | 1 cut(s) | 80 |
| MflI | RGATCY | 1 cut(s) | 442 |
| MlyI | GAGTC | 3 cut(s) | 664, 1042, 1508 |
| MmeI | TCCRAC | 6 cut(s) | 129, 135, 509, 932, 966, 1601 |
| MseI | TTAA | 8 cut(s) | 8, 134, 960, 1013, 1082, 1100, 1466, 1618 |
| MspI | CCGG | 2 cut(s) | 950, 1041 |
| MspR9I | CCNGG | 3 cut(s) | 637, 951, 1241 |
| MunI | CAATTG | 1 cut(s) | 80 |
| Mva1269I | GAATGC | 2 cut(s) | 469, 721 |
| MvaI | CCWGG | 2 cut(s) | 637, 1241 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1532 |
| NciI | CCSGG | 1 cut(s) | 951 |
| NdeI | CATATG | 1 cut(s) | 387 |
| NdeII | GATC | 6 cut(s) | 442, 616, 820, 845, 1016, 1088 |
| NlaIV | GGNNCC | 2 cut(s) | 1140, 1180 |
| NmeAIII | GCCGAG | 1 cut(s) | 441 |
| NmuCI | GTSAC | 1 cut(s) | 587 |
| NspI | RCATGY | 4 cut(s) | 125, 528, 608, 1454 |
| NspV | TTCGAA | 1 cut(s) | 461 |
| PaeI | GCATGC | 2 cut(s) | 608, 1454 |
| PaqCI | CACCTGC | 1 cut(s) | 319 |
| PasI | CCCWGGG | 1 cut(s) | 636 |
| PciSI | GCTCTTC | 1 cut(s) | 250 |
| PctI | GAATGC | 2 cut(s) | 469, 721 |
| PfeI | GAWTC | 5 cut(s) | 334, 403, 881, 1364, 1415 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1151 |
| PinAI | ACCGGT | 1 cut(s) | 1040 |
| PkrI | GCNGC | 3 cut(s) | 127, 870, 1143 |
| Ple19I | CGATCG | 1 cut(s) | 848 |
| PleI | GAGTC | 3 cut(s) | 663, 1041, 1507 |
| PpsI | GAGTC | 3 cut(s) | 663, 1041, 1507 |
| Psp6I | CCWGG | 2 cut(s) | 635, 1239 |
| PspGI | CCWGG | 2 cut(s) | 635, 1239 |
| PspN4I | GGNNCC | 2 cut(s) | 1140, 1180 |
| PspPI | GGNCC | 3 cut(s) | 186, 733, 757 |
| PsuI | RGATCY | 1 cut(s) | 442 |
| PvuI | CGATCG | 1 cut(s) | 848 |
| RsaI | GTAC | 3 cut(s) | 473, 1039, 1192 |
| RsaNI | GTAC | 3 cut(s) | 472, 1038, 1191 |
| SalI | GTCGAC | 1 cut(s) | 657 |
| SapI | GCTCTTC | 1 cut(s) | 250 |
| SaqAI | TTAA | 8 cut(s) | 8, 134, 960, 1013, 1082, 1100, 1466, 1618 |
| SatI | GCNGC | 3 cut(s) | 126, 869, 1142 |
| Sau3AI | GATC | 6 cut(s) | 442, 616, 820, 845, 1016, 1088 |
| Sau96I | GGNCC | 3 cut(s) | 186, 733, 757 |
| ScaI | AGTACT | 1 cut(s) | 1192 |
| SchI | GAGTC | 3 cut(s) | 664, 1042, 1508 |
| ScrFI | CCNGG | 3 cut(s) | 637, 951, 1241 |
| SfaNI | GCATC | 1 cut(s) | 1351 |
| SfuI | TTCGAA | 1 cut(s) | 461 |
| SinI | GGWCC | 3 cut(s) | 186, 733, 757 |
| SphI | GCATGC | 2 cut(s) | 608, 1454 |
| SsiI | CCGC | 1 cut(s) | 1142 |
| SspMI | CTAG | 3 cut(s) | 113, 468, 767 |
| StyD4I | CCNGG | 3 cut(s) | 635, 949, 1239 |
| StyI | CCWWGG | 1 cut(s) | 620 |
| TaaI | ACNGT | 2 cut(s) | 700, 1202 |
| TaqI | TCGA | 5 cut(s) | 70, 461, 658, 1019, 1087 |
| TaqII | GACCGA | 1 cut(s) | 1543 |
| TatI | WGTACW | 1 cut(s) | 1190 |
| TauI | GCSGC | 1 cut(s) | 1144 |
| TfiI | GAWTC | 5 cut(s) | 334, 403, 881, 1364, 1415 |
| Tru1I | TTAA | 8 cut(s) | 8, 134, 960, 1013, 1082, 1100, 1466, 1618 |
| Tru9I | TTAA | 8 cut(s) | 8, 134, 960, 1013, 1082, 1100, 1466, 1618 |
| TscAI | CASTG | 4 cut(s) | 211, 280, 1359, 1549 |
| TseFI | GTSAC | 1 cut(s) | 587 |
| TseI | GCWGC | 2 cut(s) | 125, 868 |
| Tsp45I | GTSAC | 1 cut(s) | 587 |
| TspDTI | ATGAA | 5 cut(s) | 152, 224, 350, 449, 453 |
| TspRI | CASTG | 4 cut(s) | 211, 280, 1359, 1549 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1151 |
| VpaK11BI | GGWCC | 3 cut(s) | 186, 733, 757 |
| XapI | RAATTY | 4 cut(s) | 60, 227, 1168, 1468 |
| XbaI | TCTAGA | 1 cut(s) | 112 |
| XceI | RCATGY | 4 cut(s) | 125, 528, 608, 1454 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1152 |
| XmiI | GTMKAC | 1 cut(s) | 658 |
| XspI | CTAG | 3 cut(s) | 113, 468, 767 |
| ZrmI | AGTACT | 1 cut(s) | 1192 |