Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_24 | PF03004 | 2 - 92 | 7.7e-07 | Plant transposase (Ptta/En/Spm family) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 472 |
| AciI | CCGC | 1 cut(s) | 472 |
| AcsI | RAATTY | 1 cut(s) | 139 |
| AfaI | GTAC | 1 cut(s) | 332 |
| AflIII | ACRYGT | 1 cut(s) | 274 |
| AgsI | TTSAA | 3 cut(s) | 158, 236, 437 |
| AjnI | CCWGG | 1 cut(s) | 324 |
| AluBI | AGCT | 1 cut(s) | 100 |
| AluI | AGCT | 1 cut(s) | 100 |
| Alw21I | GWGCWC | 1 cut(s) | 102 |
| Alw26I | GTCTC | 1 cut(s) | 265 |
| ApeKI | GCWGC | 1 cut(s) | 404 |
| ApoI | RAATTY | 1 cut(s) | 139 |
| AseI | ATTAAT | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 1 cut(s) | 94 |
| AxyI | CCTNAGG | 1 cut(s) | 129 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| Bbv12I | GWGCWC | 1 cut(s) | 102 |
| BbvI | GCAGC | 1 cut(s) | 391 |
| BccI | CCATC | 1 cut(s) | 448 |
| BciT130I | CCWGG | 1 cut(s) | 326 |
| BclI | TGATCA | 1 cut(s) | 382 |
| BcoDI | GTCTC | 1 cut(s) | 265 |
| BfaI | CTAG | 1 cut(s) | 411 |
| BisI | GCNGC | 1 cut(s) | 405 |
| BlsI | GCNGC | 1 cut(s) | 406 |
| Bme1390I | CCNGG | 1 cut(s) | 326 |
| BmiI | GGNNCC | 1 cut(s) | 135 |
| BmrFI | CCNGG | 1 cut(s) | 326 |
| BmsI | GCATC | 2 cut(s) | 212, 263 |
| Bsa29I | ATCGAT | 1 cut(s) | 443 |
| Bse21I | CCTNAGG | 1 cut(s) | 129 |
| Bse3DI | GCAATG | 1 cut(s) | 82 |
| BseBI | CCWGG | 1 cut(s) | 326 |
| BseCI | ATCGAT | 1 cut(s) | 443 |
| BseGI | GGATG | 2 cut(s) | 203, 496 |
| BseMI | GCAATG | 1 cut(s) | 82 |
| BseMII | CTCAG | 2 cut(s) | 47, 120 |
| BseXI | GCAGC | 1 cut(s) | 391 |
| BsgI | GTGCAG | 1 cut(s) | 358 |
| BshVI | ATCGAT | 1 cut(s) | 443 |
| BsiHKAI | GWGCWC | 1 cut(s) | 102 |
| BsmAI | GTCTC | 1 cut(s) | 265 |
| Bsp1286I | GDGCHC | 1 cut(s) | 102 |
| Bsp1407I | TGTACA | 1 cut(s) | 330 |
| Bsp143I | GATC | 3 cut(s) | 36, 183, 382 |
| BspACI | CCGC | 1 cut(s) | 472 |
| BspCNI | CTCAG | 2 cut(s) | 46, 121 |
| BspDI | ATCGAT | 1 cut(s) | 443 |
| BspLI | GGNNCC | 1 cut(s) | 135 |
| BsrBI | CCGCTC | 1 cut(s) | 472 |
| BsrDI | GCAATG | 1 cut(s) | 82 |
| BsrGI | TGTACA | 1 cut(s) | 330 |
| BssMI | GATC | 3 cut(s) | 36, 183, 382 |
| Bst2UI | CCWGG | 1 cut(s) | 326 |
| Bst4CI | ACNGT | 1 cut(s) | 510 |
| Bst6I | CTCTTC | 1 cut(s) | 438 |
| BstAUI | TGTACA | 1 cut(s) | 330 |
| BstDEI | CTNAG | 2 cut(s) | 33, 129 |
| BstF5I | GGATG | 2 cut(s) | 203, 496 |
| BstKTI | GATC | 3 cut(s) | 39, 186, 385 |
| BstMAI | GTCTC | 1 cut(s) | 265 |
| BstMBI | GATC | 3 cut(s) | 36, 183, 382 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 478 |
| BstNI | CCWGG | 1 cut(s) | 326 |
| BstNSI | RCATGY | 1 cut(s) | 481 |
| BstSCI | CCNGG | 1 cut(s) | 324 |
| BstV1I | GCAGC | 1 cut(s) | 391 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 325 |
| Bsu15I | ATCGAT | 1 cut(s) | 443 |
| Bsu36I | CCTNAGG | 1 cut(s) | 129 |
| BsuTUI | ATCGAT | 1 cut(s) | 443 |
| BtsCI | GGATG | 2 cut(s) | 203, 496 |
| BtsIMutI | CAGTG | 1 cut(s) | 515 |
| ClaI | ATCGAT | 1 cut(s) | 443 |
| Csp6I | GTAC | 1 cut(s) | 331 |
| CviAII | CATG | 4 cut(s) | 397, 465, 478, 482 |
| CviJI | RGCY | 3 cut(s) | 100, 191, 362 |
| CviKI_1 | RGCY | 3 cut(s) | 100, 191, 362 |
| CviQI | GTAC | 1 cut(s) | 331 |
| DdeI | CTNAG | 2 cut(s) | 33, 129 |
| DpnI | GATC | 3 cut(s) | 38, 185, 384 |
| DpnII | GATC | 3 cut(s) | 36, 183, 382 |
| Eam1104I | CTCTTC | 1 cut(s) | 438 |
| EarI | CTCTTC | 1 cut(s) | 438 |
| Ecl136II | GAGCTC | 1 cut(s) | 100 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco53kI | GAGCTC | 1 cut(s) | 100 |
| Eco81I | CCTNAGG | 1 cut(s) | 129 |
| EcoICRI | GAGCTC | 1 cut(s) | 100 |
| EcoRII | CCWGG | 1 cut(s) | 324 |
| EcoT22I | ATGCAT | 2 cut(s) | 256, 483 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| FaeI | CATG | 4 cut(s) | 400, 468, 481, 485 |
| FatI | CATG | 4 cut(s) | 396, 464, 477, 481 |
| FauNDI | CATATG | 1 cut(s) | 379 |
| FbaI | TGATCA | 1 cut(s) | 382 |
| Fnu4HI | GCNGC | 1 cut(s) | 405 |
| FokI | GGATG | 2 cut(s) | 190, 503 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 1 cut(s) | 405 |
| FspBI | CTAG | 1 cut(s) | 411 |
| GluI | GCNGC | 1 cut(s) | 405 |
| Hin1II | CATG | 4 cut(s) | 400, 468, 481, 485 |
| HinfI | GANTC | 3 cut(s) | 116, 305, 448 |
| HphI | GGTGA | 1 cut(s) | 94 |
| Hpy166II | GTNNAC | 3 cut(s) | 73, 331, 499 |
| Hpy188I | TCNGA | 3 cut(s) | 36, 121, 310 |
| Hpy188III | TCNNGA | 2 cut(s) | 40, 215 |
| Hpy8I | GTNNAC | 3 cut(s) | 73, 331, 499 |
| HpyAV | CCTTC | 1 cut(s) | 415 |
| HpyCH4III | ACNGT | 1 cut(s) | 510 |
| HpyCH4IV | ACGT | 1 cut(s) | 276 |
| HpyCH4V | TGCA | 8 cut(s) | 87, 254, 288, 339, 377, 407, 481, 526 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 478 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 129 |
| HpySE526I | ACGT | 1 cut(s) | 276 |
| Hsp92II | CATG | 4 cut(s) | 400, 468, 481, 485 |
| Ksp22I | TGATCA | 1 cut(s) | 382 |
| Kzo9I | GATC | 3 cut(s) | 36, 183, 382 |
| LpnPI | CCDG | 7 cut(s) | 25, 90, 141, 228, 311, 326, 338 |
| Lsp1109I | GCAGC | 1 cut(s) | 391 |
| LweI | GCATC | 2 cut(s) | 212, 263 |
| MaeI | CTAG | 1 cut(s) | 411 |
| MaeII | ACGT | 1 cut(s) | 276 |
| MaeIII | GTNAC | 1 cut(s) | 392 |
| MalI | GATC | 3 cut(s) | 38, 185, 384 |
| MbiI | CCGCTC | 1 cut(s) | 472 |
| MboI | GATC | 3 cut(s) | 36, 183, 382 |
| MboII | GAAGA | 3 cut(s) | 425, 426, 530 |
| MhlI | GDGCHC | 1 cut(s) | 102 |
| MluCI | AATT | 5 cut(s) | 139, 158, 293, 521, 544 |
| MlyI | GAGTC | 2 cut(s) | 110, 457 |
| MnlI | CCTC | 6 cut(s) | 59, 124, 192, 211, 274, 340 |
| Mph1103I | ATGCAT | 2 cut(s) | 256, 483 |
| MseI | TTAA | 2 cut(s) | 161, 225 |
| MspR9I | CCNGG | 1 cut(s) | 326 |
| MvaI | CCWGG | 1 cut(s) | 326 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 478 |
| NdeI | CATATG | 1 cut(s) | 379 |
| NdeII | GATC | 3 cut(s) | 36, 183, 382 |
| NlaIII | CATG | 4 cut(s) | 400, 468, 481, 485 |
| NlaIV | GGNNCC | 1 cut(s) | 135 |
| NmuCI | GTSAC | 1 cut(s) | 392 |
| NsiI | ATGCAT | 2 cut(s) | 256, 483 |
| NspI | RCATGY | 1 cut(s) | 481 |
| PfeI | GAWTC | 1 cut(s) | 305 |
| PkrI | GCNGC | 1 cut(s) | 406 |
| PleI | GAGTC | 2 cut(s) | 110, 456 |
| PpsI | GAGTC | 2 cut(s) | 110, 456 |
| PshBI | ATTAAT | 1 cut(s) | 161 |
| Psp124BI | GAGCTC | 1 cut(s) | 102 |
| Psp6I | CCWGG | 1 cut(s) | 324 |
| PspGI | CCWGG | 1 cut(s) | 324 |
| PspN4I | GGNNCC | 1 cut(s) | 135 |
| RsaI | GTAC | 1 cut(s) | 332 |
| RsaNI | GTAC | 1 cut(s) | 331 |
| SacI | GAGCTC | 1 cut(s) | 102 |
| SaqAI | TTAA | 2 cut(s) | 161, 225 |
| SatI | GCNGC | 1 cut(s) | 405 |
| Sau3AI | GATC | 3 cut(s) | 36, 183, 382 |
| SchI | GAGTC | 2 cut(s) | 110, 457 |
| ScrFI | CCNGG | 1 cut(s) | 326 |
| SduI | GDGCHC | 1 cut(s) | 102 |
| SetI | ASST | 6 cut(s) | 70, 102, 130, 222, 279, 315 |
| SfaNI | GCATC | 2 cut(s) | 212, 263 |
| Sse9I | AATT | 5 cut(s) | 139, 158, 293, 521, 544 |
| SsiI | CCGC | 1 cut(s) | 472 |
| SspMI | CTAG | 1 cut(s) | 411 |
| SstI | GAGCTC | 1 cut(s) | 102 |
| StyD4I | CCNGG | 1 cut(s) | 324 |
| TaaI | ACNGT | 1 cut(s) | 510 |
| TaiI | ACGT | 1 cut(s) | 279 |
| TaqI | TCGA | 1 cut(s) | 443 |
| TasI | AATT | 5 cut(s) | 139, 158, 293, 521, 544 |
| TatI | WGTACW | 1 cut(s) | 330 |
| TfiI | GAWTC | 1 cut(s) | 305 |
| Tru1I | TTAA | 2 cut(s) | 161, 225 |
| Tru9I | TTAA | 2 cut(s) | 161, 225 |
| TscAI | CASTG | 1 cut(s) | 515 |
| TseFI | GTSAC | 1 cut(s) | 392 |
| TseI | GCWGC | 1 cut(s) | 404 |
| Tsp45I | GTSAC | 1 cut(s) | 392 |
| TspDTI | ATGAA | 5 cut(s) | 72, 179, 258, 434, 453 |
| TspRI | CASTG | 1 cut(s) | 515 |
| VspI | ATTAAT | 1 cut(s) | 161 |
| XapI | RAATTY | 1 cut(s) | 139 |
| XceI | RCATGY | 1 cut(s) | 481 |
| XspI | CTAG | 1 cut(s) | 411 |
| Zsp2I | ATGCAT | 2 cut(s) | 256, 483 |