Rorug01G0072600

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
11903025 .. 11905424
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0072600.1

Sequence Viewer

Length: 2232 bp
ATGGCTAAGCATAGAGCTATCCTATTTTCTTATGTTTTCCCCAGTCTTATACTAACCTTGAGCTTCTTCCTATGCAAAGCCATCGATGAAAATAGAAAGGTCCATATTGTGTACCTGGGTTCACTTCCTGATAATGAGGTGTACTCACCATTGTCTCACCACCTTGGTCTACTTGAAAAAGTTGTCGAGAGCAACTCCGCTGCAAATTTCTTGACAAGAAGTTACAAAAGAAGTTTCAATGGATTTGTTGCAAAGCTCACTGACCGCGAAGGGGAAAGGCTTGCTAACATGAAGGAAGTAGTCTCTGTCTTTCCGAGCAGAATTCTCCATCCTCAGACAACAAGATCTTGGGACTTTATCGGTTTCAATGAGAAAACCAAACGAAATGCTAGTGTTGAGAGTGATACCATTGTTGGCGTCATTGACTCTGGAATTTGGCCTGAATCGGAGAGCTTTAAAGATGATGGTTTTGGTCCTCCTCCCAAGAAGTGGAAAGGTGCTTGTGAAGGTGGCAAAAATTTCATTTGCAACAAAAAGCTTATTGGAGCTCGGTTTTACGGTCAACACTTAGATGATGCAAGGGATGAAATAGGCCATGGAACCCACACAGCTTCAACTGCAGCAGGGAACGCTGTAAAGGATGTGAGCTTTTATGGACTAGCACAAGGTATTGCAAGAGGAGGGGTTCCCTCAGCGAGAATTGCTGCGTACAAAGTCTGTGAACCTTTAGGGTGCCCTACAGAGAATATCTTGGCTGCTTTTGACGATGCTATTGCCGATGGAGTTGATATCATTACAATTTCAATAGGCAGTGTGCAAGCATCTTTATTACAACATGATCCTATTGCTATCGGTGCTTTTCATGCAATGACAAAGGGGATACTTACATCAAATTCTGCAGGCAACAATGGTCCTAATGATTCAAGTGTTTCAAGTGTAGCACCATGGATACTTGCAGTTGCAGCAAGTAGTATTGATCGTAGAATCATTGACAACGTTGTTCTCGAAAATGGGACGACATTGGTTGGGGCTGCAGTGAACACTTTCACATTAAATGAGACAAGTTTTCCATTGATTTATGGAAAAGATGCTTCAAGTCAATGCTCCGAGTCTGAAGCTGAGAGCTGTGAAGAAGGCTGCTTAGACAGTGGTTTAGTTAAGGGAAAGGTTGTGTTATGTGACGAGCCTTACGGAGTTAATGAGGCCAATCGTTCTGGAGCAGTAGGCTCAATTCTGAGATTTGATTGGGATGATGTTTCTCCAATTGTACCCATTCCTGCAACAGTTTTCACCTACAAAGAGCATAGTCTGATAAAGTTGTACATGAACTCCACGAAAGATGCTCGAGTAAACATACAGAGAAGTGAAGTCAAAAGGGATACTACCGCGCCTGTTGTTGCTTCCTTCTCTTCACGTGGACCAAATTCAATTCTACCAGAAATTATCAAGCCAGATATAAGCGCCCCAGGTGTAACTATTTTGGCTGCCTTTTCACCTGCTGGTATACTTACAGGGAGTTATTACGACATGAGGCGTGTCAACTACAGTATACTATCTGGAACATCCATGTCTTGCCCGCACGCAGCCGGTGCTGCTGCATATGTTAAAGAATTCCATCCTGATTGGTCTCCAGCAGCCATCAAATCATCTCTTATGACTACAGCTTCTCCTATGAATGTTACTGACAATAGCAGAGCCGCTGGTGAATTTGCATATGGATCTGGACATATCAATCCTGTCAAAGCTATAGACCCAGGGCTTGTGTATGAAGCTTCTAAGGAAGACTACATCAAGTTGCTCTGCTTGGTCTTAAACCAGACCGATGTTAGACTTATATCAGGAGATAACATCACTTGCTCTACAGGCTCCGACAAAGGATCTTTACAAGATCACAATTACCCTTCACTAGCAGCTGTTGTCGCACCAAACAAATCTTTTTCGTTAAGTTTTCACAGAACAGTGAAGAATGTTGGCCTTGCAAACTCCACTTACAATGCTACAGTATTCGCCAACTCTACTGAAGTTGACATCAAAGTGGTGCCTCAAGTTCTTTCCTTCAAGTCATTGGATGAGGAGAAGACTTTTGATGTGACCGTTGCCGGAAAAGGTTTGTCAGATGAAGTACAATCACATGTGTCTGCATCGTTGGTGTGGTCTGATGGAATTCATAGCGTTAGAAGTCCAATTGTTATCTACAAAAAAACTATAAATCCTAGCATTACTGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

743

Amino Acids

79.71

Weight (kDa)

6.08

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 34 - 110 6.9e-12 Peptidase inhibitor I9
Peptidase_S8 PF00082 134 - 575 1.1e-45 Subtilase family
fn3_6 PF17766 630 - 731 2.1e-24 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1504
Acc36I ACCTGC 1 cut(s) 1504
AccB1I GGYRCC 2 cut(s) 732, 2038
AccB7I CCANNNNNTGG 1 cut(s) 489
AccI GTMKAC 3 cut(s) 169, 1504, 1549
AccII CGCG 2 cut(s) 267, 1388
AciI CCGC 5 cut(s) 198, 265, 1386, 1577, 1698
AclI AACGTT 1 cut(s) 996
AclWI GGATC 3 cut(s) 833, 1726, 1885
AcsI RAATTY 9 cut(s) 205, 321, 432, 517, 892, 1423, 1610, 1706, 2163
AcuI CTGAAG 2 cut(s) 1134, 2040
AcvI CACGTG 1 cut(s) 1415
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 6 cut(s) 113, 143, 710, 1269, 1322, 2124
AfiI CCNNNNNNNGG 2 cut(s) 271, 489
AflIII ACRYGT 1 cut(s) 2131
AjnI CCWGG 3 cut(s) 114, 1465, 1753
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 4 cut(s) 159, 307, 1052, 1632
AlwI GGATC 3 cut(s) 833, 1726, 1885
Ama87I CYCGRG 1 cut(s) 1344
AoxI GGCC 4 cut(s) 437, 592, 1203, 1972
ApoI RAATTY 9 cut(s) 205, 321, 432, 517, 892, 1423, 1610, 1706, 2163
Asp700I GAANNNNTTC 1 cut(s) 1043
AspLEI GCGC 2 cut(s) 1390, 1463
AspS9I GGNCC 4 cut(s) 100, 473, 911, 1418
AsuHPI GGTGA 5 cut(s) 138, 149, 1282, 1485, 1715
AvaI CYCGRG 1 cut(s) 1344
AvaII GGWCC 4 cut(s) 100, 473, 911, 1418
BaeGI GKGCMC 1 cut(s) 737
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BanI GGYRCC 2 cut(s) 732, 2038
BanII GRGCYC 1 cut(s) 550
BbrPI CACGTG 1 cut(s) 1415
BbsI GAAGAC 2 cut(s) 1788, 2084
Bbv12I GWGCWC 1 cut(s) 550
BbvCI CCTCAGC 1 cut(s) 691
BccI CCATC 7 cut(s) 89, 336, 458, 773, 1623, 1646, 2153
BcgI CGANNNNNNTGC 4 cut(s) 64, 98, 755, 789
BciT130I CCWGG 3 cut(s) 116, 1467, 1755
BciVI GTATCC 3 cut(s) 873, 942, 1372
BcoDI GTCTC 4 cut(s) 159, 307, 1052, 1632
BfaI CTAG 4 cut(s) 390, 659, 1907, 2214
BfmI CTRYAG 9 cut(s) 618, 738, 897, 1032, 1543, 1659, 1746, 1860, 1998
BfoI RGCGCY 1 cut(s) 1464
BfuAI ACCTGC 1 cut(s) 1504
BfuI GTATCC 3 cut(s) 873, 942, 1372
BglII AGATCT 1 cut(s) 344
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 3 cut(s) 116, 1467, 1755
Bme18I GGWCC 4 cut(s) 100, 473, 911, 1418
BmeT110I CYCGRG 1 cut(s) 1344
BmgT120I GGNCC 4 cut(s) 100, 473, 911, 1418
BmiI GGNNCC 5 cut(s) 601, 687, 734, 1867, 2040
BmrFI CCNGG 3 cut(s) 116, 1467, 1755
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 6 cut(s) 565, 757, 830, 1078, 1330, 2150
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 1788, 2084
BplI GAGNNNNNCTC 4 cut(s) 128, 160, 179, 211
BpmI CTGGAG 2 cut(s) 1236, 1614
Bpu10I CCTNAGC 1 cut(s) 691
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 2 cut(s) 79, 2028
Bsa29I ATCGAT 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 1415
BsaHI GRCGYC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 1632
BsaJI CCNNGG 7 cut(s) 115, 163, 595, 944, 1465, 1753, 1754
BsaXI ACNNNNNCTCC 4 cut(s) 1313, 1343, 1651, 1681
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 489
Bse118I RCCGGY 1 cut(s) 1586
Bse1I ACTGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 873
BseBI CCWGG 3 cut(s) 116, 1467, 1755
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 7 cut(s) 115, 163, 595, 944, 1465, 1753, 1754
BseGI GGATG 7 cut(s) 328, 589, 646, 1255, 1562, 1615, 2074
BseLI CCNNNNNNNGG 2 cut(s) 271, 489
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 4 cut(s) 347, 705, 1110, 1226
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 3 cut(s) 468, 693, 2087
BseSI GKGCMC 1 cut(s) 737
Bsh1236I CGCG 2 cut(s) 267, 1388
BshFI GGCC 4 cut(s) 439, 594, 1205, 1974
BshNI GGYRCC 2 cut(s) 732, 2038
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 1344
BsiSI CCGG 2 cut(s) 1587, 2100
BslFI GGGAC 2 cut(s) 365, 1027
BslI CCNNNNNNNGG 2 cut(s) 271, 489
BsmAI GTCTC 4 cut(s) 159, 307, 1052, 1632
BsmFI GGGAC 2 cut(s) 365, 1027
BsnI GGCC 4 cut(s) 439, 594, 1205, 1974
Bso31I GGTCTC 1 cut(s) 1632
BsoBI CYCGRG 1 cut(s) 1344
Bsp1286I GDGCHC 2 cut(s) 550, 737
Bsp1407I TGTACA 1 cut(s) 1320
Bsp143I GATC 6 cut(s) 344, 838, 976, 1718, 1877, 1888
Bsp1720I GCTNAGC 1 cut(s) 6
Bsp19I CCATGG 2 cut(s) 595, 944
BspACI CCGC 5 cut(s) 198, 265, 1386, 1577, 1698
BspANI GGCC 4 cut(s) 439, 594, 1205, 1974
BspCNI CTCAG 4 cut(s) 346, 704, 1111, 1227
BspDI ATCGAT 1 cut(s) 84
BspFNI CGCG 2 cut(s) 267, 1388
BspLI GGNNCC 5 cut(s) 601, 687, 734, 1867, 2040
BspMAI CTGCAG 3 cut(s) 622, 901, 1036
BspMI ACCTGC 1 cut(s) 1504
BspPI GGATC 3 cut(s) 833, 1726, 1885
BspT107I GGYRCC 2 cut(s) 732, 2038
BspTNI GGTCTC 1 cut(s) 1632
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 1 cut(s) 1586
BsrGI TGTACA 1 cut(s) 1320
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 1586
BssECI CCNNGG 7 cut(s) 115, 163, 595, 944, 1465, 1753, 1754
BssMI GATC 6 cut(s) 344, 838, 976, 1718, 1877, 1888
BssNAI GTATAC 2 cut(s) 1505, 1550
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 3 cut(s) 163, 595, 944
Bst1107I GTATAC 2 cut(s) 1505, 1550
Bst2UI CCWGG 3 cut(s) 116, 1467, 1755
Bst4CI ACNGT 7 cut(s) 560, 1148, 1285, 1547, 1960, 2002, 2095
Bst6I CTCTTC 1 cut(s) 1414
BstACI GRCGYC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 1589
BstAUI TGTACA 1 cut(s) 1320
BstBAI YACGTR 1 cut(s) 1415
BstC8I GCNNGC 5 cut(s) 282, 819, 901, 1577, 1581
BstDEI CTNAG 8 cut(s) 6, 333, 568, 691, 1119, 1141, 1235, 1776
BstDSI CCRYGG 2 cut(s) 595, 944
BstF5I GGATG 7 cut(s) 328, 589, 646, 1255, 1562, 1615, 2074
BstFNI CGCG 2 cut(s) 267, 1388
BstH2I RGCGCY 1 cut(s) 1464
BstHHI GCGC 2 cut(s) 1390, 1463
BstKTI GATC 6 cut(s) 347, 841, 979, 1721, 1880, 1891
BstMAI GTCTC 4 cut(s) 159, 307, 1052, 1632
BstMBI GATC 6 cut(s) 344, 838, 976, 1718, 1877, 1888
BstNI CCWGG 3 cut(s) 116, 1467, 1755
BstNSI RCATGY 1 cut(s) 2135
BstSCI CCNGG 3 cut(s) 114, 1465, 1753
BstSFI CTRYAG 9 cut(s) 618, 738, 897, 1032, 1543, 1659, 1746, 1860, 1998
BstSLI GKGCMC 1 cut(s) 737
BstUI CGCG 2 cut(s) 267, 1388
BstV2I GAAGAC 2 cut(s) 1788, 2084
BstX2I RGATCY 3 cut(s) 344, 1718, 1877
BstYI RGATCY 3 cut(s) 344, 1718, 1877
BstZ17I GTATAC 2 cut(s) 1505, 1550
Bsu15I ATCGAT 1 cut(s) 84
BsuI GTATCC 3 cut(s) 873, 942, 1372
BsuRI GGCC 4 cut(s) 439, 594, 1205, 1974
BsuTUI ATCGAT 1 cut(s) 84
BtgI CCRYGG 2 cut(s) 595, 944
BtsCI GGATG 7 cut(s) 328, 589, 646, 1255, 1562, 1615, 2074
BtsI GCAGTG 2 cut(s) 817, 1041
BtsIMutI CAGTG 5 cut(s) 258, 817, 1041, 1153, 1965
BveI ACCTGC 1 cut(s) 1504
Cac8I GCNNGC 5 cut(s) 282, 819, 901, 1577, 1581
CfoI GCGC 2 cut(s) 1390, 1463
Cfr10I RCCGGY 1 cut(s) 1586
Cfr13I GGNCC 4 cut(s) 100, 473, 911, 1418
ClaI ATCGAT 1 cut(s) 84
CseI GACGC 1 cut(s) 406
Csp6I GTAC 6 cut(s) 112, 142, 709, 1268, 1321, 2123
CviAII CATG 9 cut(s) 289, 596, 836, 863, 945, 1324, 1528, 1567, 2132
CviQI GTAC 6 cut(s) 112, 142, 709, 1268, 1321, 2123
DdeI CTNAG 8 cut(s) 6, 333, 568, 691, 1119, 1141, 1235, 1776
DpnI GATC 6 cut(s) 346, 840, 978, 1720, 1879, 1890
DpnII GATC 6 cut(s) 344, 838, 976, 1718, 1877, 1888
DraI TTTAAA 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 1414
EarI CTCTTC 1 cut(s) 1414
Ecl136II GAGCTC 1 cut(s) 548
Eco130I CCWWGG 3 cut(s) 163, 595, 944
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 1 cut(s) 1632
Eco32I GATATC 1 cut(s) 790
Eco47I GGWCC 4 cut(s) 100, 473, 911, 1418
Eco53kI GAGCTC 1 cut(s) 548
Eco57I CTGAAG 2 cut(s) 1134, 2040
Eco72I CACGTG 1 cut(s) 1415
Eco88I CYCGRG 1 cut(s) 1344
EcoICRI GAGCTC 1 cut(s) 548
EcoRI GAATTC 3 cut(s) 321, 1610, 2163
EcoRII CCWGG 3 cut(s) 114, 1465, 1753
EcoRV GATATC 1 cut(s) 790
EcoT14I CCWWGG 3 cut(s) 163, 595, 944
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 3 cut(s) 163, 595, 944
FaeI CATG 9 cut(s) 292, 599, 839, 866, 948, 1327, 1531, 1570, 2135
FaqI GGGAC 2 cut(s) 365, 1027
FatI CATG 9 cut(s) 288, 595, 835, 862, 944, 1323, 1527, 1566, 2131
FauI CCCGC 1 cut(s) 1584
FauNDI CATATG 2 cut(s) 1600, 1714
FblI GTMKAC 3 cut(s) 169, 1504, 1549
FokI GGATG 7 cut(s) 315, 596, 653, 1262, 1549, 1602, 2081
FriOI GRGCYC 1 cut(s) 550
FspBI CTAG 4 cut(s) 390, 659, 1907, 2214
GlaI GCGC 2 cut(s) 1389, 1462
GsuI CTGGAG 2 cut(s) 1236, 1614
HaeII RGCGCY 1 cut(s) 1464
HaeIII GGCC 4 cut(s) 439, 594, 1205, 1974
HapII CCGG 2 cut(s) 1587, 2100
HgaI GACGC 1 cut(s) 406
HhaI GCGC 2 cut(s) 1390, 1463
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 9 cut(s) 292, 599, 839, 866, 948, 1327, 1531, 1570, 2135
Hin6I GCGC 2 cut(s) 1388, 1461
HinP1I GCGC 2 cut(s) 1388, 1461
HincII GTYRAC 3 cut(s) 563, 1540, 2026
HindII GTYRAC 3 cut(s) 563, 1540, 2026
HindIII AAGCTT 2 cut(s) 536, 1770
HinfI GANTC 5 cut(s) 425, 443, 920, 984, 1109
HpaII CCGG 2 cut(s) 1587, 2100
HphI GGTGA 5 cut(s) 138, 149, 1282, 1485, 1715
HpyAV CCTTC 7 cut(s) 263, 286, 500, 1127, 1414, 1911, 2065
HpyCH4III ACNGT 7 cut(s) 560, 1148, 1285, 1547, 1960, 2002, 2095
HpyCH4IV ACGT 2 cut(s) 996, 1414
HpyF3I CTNAG 8 cut(s) 6, 333, 568, 691, 1119, 1141, 1235, 1776
HpySE526I ACGT 2 cut(s) 996, 1414
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 9 cut(s) 292, 599, 839, 866, 948, 1327, 1531, 1570, 2135
HspAI GCGC 2 cut(s) 1388, 1461
Kzo9I GATC 6 cut(s) 344, 838, 976, 1718, 1877, 1888
LmnI GCTCC 4 cut(s) 545, 1109, 1217, 1871
LweI GCATC 6 cut(s) 565, 757, 830, 1078, 1330, 2150
MaeI CTAG 4 cut(s) 390, 659, 1907, 2214
MaeII ACGT 2 cut(s) 996, 1414
MaeIII GTNAC 5 cut(s) 221, 1178, 1471, 1678, 2089
MalI GATC 6 cut(s) 346, 840, 978, 1720, 1879, 1890
MboI GATC 6 cut(s) 344, 838, 976, 1718, 1877, 1888
MboII GAAGA 6 cut(s) 58, 1142, 1401, 1793, 1975, 2089
MfeI CAATTG 2 cut(s) 1263, 2184
MflI RGATCY 3 cut(s) 344, 1718, 1877
MhlI GDGCHC 2 cut(s) 550, 737
MlyI GAGTC 2 cut(s) 419, 1118
MmeI TCCRAC 1 cut(s) 1893
MroXI GAANNNNTTC 1 cut(s) 1043
MseI TTAA 7 cut(s) 456, 1052, 1158, 1197, 1605, 1811, 1943
MslI CAYNNNNRTG 2 cut(s) 570, 2033
MspA1I CMGCKG 3 cut(s) 200, 1700, 1913
MspI CCGG 2 cut(s) 1587, 2100
MspR9I CCNGG 3 cut(s) 116, 1467, 1755
MunI CAATTG 2 cut(s) 1263, 2184
MvaI CCWGG 3 cut(s) 116, 1467, 1755
MvnI CGCG 2 cut(s) 267, 1388
NcoI CCATGG 2 cut(s) 595, 944
NdeI CATATG 2 cut(s) 1600, 1714
NdeII GATC 6 cut(s) 344, 838, 976, 1718, 1877, 1888
NlaIII CATG 9 cut(s) 292, 599, 839, 866, 948, 1327, 1531, 1570, 2135
NlaIV GGNNCC 5 cut(s) 601, 687, 734, 1867, 2040
NmuCI GTSAC 2 cut(s) 1178, 2089
NspI RCATGY 1 cut(s) 2135
PaeR7I CTCGAG 1 cut(s) 1344
PaqCI CACCTGC 1 cut(s) 1504
PasI CCCWGGG 1 cut(s) 1754
PciI ACATGT 1 cut(s) 2131
PcsI WCGNNNNNNNCGW 1 cut(s) 1002
PdmI GAANNNNTTC 1 cut(s) 1043
PfeI GAWTC 3 cut(s) 443, 920, 984
PflMI CCANNNNNTGG 1 cut(s) 489
PleI GAGTC 2 cut(s) 419, 1117
PmaCI CACGTG 1 cut(s) 1415
PmlI CACGTG 1 cut(s) 1415
PpsI GAGTC 2 cut(s) 419, 1117
Ppu21I YACGTR 1 cut(s) 1415
PscI ACATGT 1 cut(s) 2131
Psp124BI GAGCTC 1 cut(s) 550
Psp1406I AACGTT 1 cut(s) 996
Psp6I CCWGG 3 cut(s) 114, 1465, 1753
PspCI CACGTG 1 cut(s) 1415
PspGI CCWGG 3 cut(s) 114, 1465, 1753
PspN4I GGNNCC 5 cut(s) 601, 687, 734, 1867, 2040
PspPI GGNCC 4 cut(s) 100, 473, 911, 1418
PspXI VCTCGAGB 1 cut(s) 1344
PstI CTGCAG 3 cut(s) 622, 901, 1036
PsuI RGATCY 3 cut(s) 344, 1718, 1877
PvuII CAGCTG 1 cut(s) 1913
RsaI GTAC 6 cut(s) 113, 143, 710, 1269, 1322, 2124
RsaNI GTAC 6 cut(s) 112, 142, 709, 1268, 1321, 2123
RseI CAYNNNNRTG 2 cut(s) 570, 2033
SacI GAGCTC 1 cut(s) 550
SaqAI TTAA 7 cut(s) 456, 1052, 1158, 1197, 1605, 1811, 1943
Sau3AI GATC 6 cut(s) 344, 838, 976, 1718, 1877, 1888
Sau96I GGNCC 4 cut(s) 100, 473, 911, 1418
SchI GAGTC 2 cut(s) 419, 1118
ScrFI CCNGG 3 cut(s) 116, 1467, 1755
SduI GDGCHC 2 cut(s) 550, 737
SfaNI GCATC 6 cut(s) 565, 757, 830, 1078, 1330, 2150
SfcI CTRYAG 9 cut(s) 618, 738, 897, 1032, 1543, 1659, 1746, 1860, 1998
Sfr274I CTCGAG 1 cut(s) 1344
SinI GGWCC 4 cut(s) 100, 473, 911, 1418
SlaI CTCGAG 1 cut(s) 1344
SmiMI CAYNNNNRTG 2 cut(s) 570, 2033
SmlI CTYRAG 3 cut(s) 58, 1344, 2043
SmoI CTYRAG 3 cut(s) 58, 1344, 2043
SsiI CCGC 5 cut(s) 198, 265, 1386, 1577, 1698
SspMI CTAG 4 cut(s) 390, 659, 1907, 2214
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 3 cut(s) 114, 1465, 1753
StyI CCWWGG 3 cut(s) 163, 595, 944
TaaI ACNGT 7 cut(s) 560, 1148, 1285, 1547, 1960, 2002, 2095
TaiI ACGT 2 cut(s) 999, 1417
TaqI TCGA 4 cut(s) 84, 186, 1005, 1345
TaqII GACCGA 1 cut(s) 1835
TatI WGTACW 3 cut(s) 141, 1320, 2122
TauI GCSGC 1 cut(s) 1700
TfiI GAWTC 3 cut(s) 443, 920, 984
Tru1I TTAA 7 cut(s) 456, 1052, 1158, 1197, 1605, 1811, 1943
Tru9I TTAA 7 cut(s) 456, 1052, 1158, 1197, 1605, 1811, 1943
TscAI CASTG 5 cut(s) 265, 817, 1041, 1153, 1965
TseFI GTSAC 2 cut(s) 1178, 2089
Tsp45I GTSAC 2 cut(s) 1178, 2089
TspGWI ACGGA 1 cut(s) 1206
TspRI CASTG 5 cut(s) 265, 817, 1041, 1153, 1965
Van91I CCANNNNNTGG 1 cut(s) 489
VpaK11BI GGWCC 4 cut(s) 100, 473, 911, 1418
XapI RAATTY 9 cut(s) 205, 321, 432, 517, 892, 1423, 1610, 1706, 2163
XceI RCATGY 1 cut(s) 2135
XhoI CTCGAG 1 cut(s) 1344
XmiI GTMKAC 3 cut(s) 169, 1504, 1549
XmnI GAANNNNTTC 1 cut(s) 1043
XspI CTAG 4 cut(s) 390, 659, 1907, 2214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.