ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1085 |
| Acc36I | ACCTGC | 1 cut(s) | 1085 |
| AccB1I | GGYRCC | 1 cut(s) | 622 |
| AciI | CCGC | 1 cut(s) | 1163 |
| AclWI | GGATC | 4 cut(s) | 287, 387, 427, 837 |
| AcsI | RAATTY | 4 cut(s) | 25, 659, 904, 1003 |
| AcyI | GRCGYC | 1 cut(s) | 955 |
| AdeI | CACNNNGTG | 1 cut(s) | 558 |
| AfaI | GTAC | 4 cut(s) | 705, 770, 870, 888 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 988 |
| AflIII | ACRYGT | 1 cut(s) | 248 |
| AgsI | TTSAA | 9 cut(s) | 67, 170, 178, 287, 427, 497, 658, 665, 966 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 923 |
| AjiI | CACGTC | 1 cut(s) | 644 |
| AjnI | CCWGG | 2 cut(s) | 295, 308 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 87, 119 |
| AluBI | AGCT | 9 cut(s) | 304, 360, 370, 510, 614, 961, 1022, 1048, 1148 |
| AluI | AGCT | 9 cut(s) | 304, 360, 370, 510, 614, 961, 1022, 1048, 1148 |
| Alw21I | GWGCWC | 1 cut(s) | 554 |
| Alw26I | GTCTC | 5 cut(s) | 348, 510, 938, 1027, 1061 |
| Alw44I | GTGCAC | 1 cut(s) | 550 |
| AlwI | GGATC | 4 cut(s) | 287, 387, 427, 837 |
| Ama87I | CYCGRG | 1 cut(s) | 202 |
| AoxI | GGCC | 1 cut(s) | 461 |
| ApaLI | GTGCAC | 1 cut(s) | 550 |
| ApeKI | GCWGC | 2 cut(s) | 367, 679 |
| ApoI | RAATTY | 4 cut(s) | 25, 659, 904, 1003 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1021 |
| AspS9I | GGNCC | 2 cut(s) | 461, 542 |
| AsuC2I | CCSGG | 1 cut(s) | 847 |
| AsuHPI | GGTGA | 1 cut(s) | 431 |
| AvaI | CYCGRG | 1 cut(s) | 202 |
| AvaII | GGWCC | 1 cut(s) | 542 |
| BaeGI | GKGCMC | 1 cut(s) | 554 |
| BanI | GGYRCC | 1 cut(s) | 622 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 752, 784 |
| BauI | CACGAG | 1 cut(s) | 361 |
| Bbv12I | GWGCWC | 1 cut(s) | 554 |
| BbvI | GCAGC | 2 cut(s) | 379, 691 |
| BccI | CCATC | 4 cut(s) | 188, 452, 689, 980 |
| BciT130I | CCWGG | 2 cut(s) | 297, 310 |
| BcnI | CCSGG | 1 cut(s) | 847 |
| BcoDI | GTCTC | 5 cut(s) | 348, 510, 938, 1027, 1061 |
| BfaI | CTAG | 4 cut(s) | 212, 530, 615, 851 |
| BfuAI | ACCTGC | 1 cut(s) | 1085 |
| BisI | GCNGC | 2 cut(s) | 368, 680 |
| BlsI | GCNGC | 2 cut(s) | 369, 681 |
| Bme1390I | CCNGG | 3 cut(s) | 297, 310, 847 |
| Bme18I | GGWCC | 1 cut(s) | 542 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 923 |
| BmeT110I | CYCGRG | 1 cut(s) | 202 |
| BmgBI | CACGTC | 1 cut(s) | 644 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 542 |
| BmiI | GGNNCC | 3 cut(s) | 543, 624, 980 |
| BmrFI | CCNGG | 3 cut(s) | 297, 310, 847 |
| BmsI | GCATC | 5 cut(s) | 37, 45, 490, 1081, 1150 |
| Bpu10I | CCTNAGC | 1 cut(s) | 143 |
| BpuEI | CTTGAG | 1 cut(s) | 359 |
| BpuMI | CCSGG | 1 cut(s) | 847 |
| BsaHI | GRCGYC | 1 cut(s) | 955 |
| BsaI | GGTCTC | 1 cut(s) | 1061 |
| BsaJI | CCNNGG | 2 cut(s) | 296, 404 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 721, 751 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 988 |
| Bse118I | RCCGGY | 1 cut(s) | 463 |
| Bse1I | ACTGG | 1 cut(s) | 325 |
| BseBI | CCWGG | 2 cut(s) | 297, 310 |
| BseDI | CCNNGG | 2 cut(s) | 296, 404 |
| BseGI | GGATG | 4 cut(s) | 88, 135, 222, 1093 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 988 |
| BseMII | CTCAG | 5 cut(s) | 31, 179, 397, 579, 948 |
| BseNI | ACTGG | 1 cut(s) | 325 |
| BseRI | GAGGAG | 2 cut(s) | 953, 956 |
| BseSI | GKGCMC | 1 cut(s) | 554 |
| BseXI | GCAGC | 2 cut(s) | 379, 691 |
| BshFI | GGCC | 1 cut(s) | 463 |
| BshNI | GGYRCC | 1 cut(s) | 622 |
| BsiHKAI | GWGCWC | 1 cut(s) | 554 |
| BsiHKCI | CYCGRG | 1 cut(s) | 202 |
| BsiSI | CCGG | 2 cut(s) | 464, 847 |
| BslFI | GGGAC | 3 cut(s) | 222, 555, 748 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 988 |
| BsmAI | GTCTC | 5 cut(s) | 348, 510, 938, 1027, 1061 |
| BsmFI | GGGAC | 3 cut(s) | 222, 555, 748 |
| BsmI | GAATGC | 1 cut(s) | 232 |
| BsnI | GGCC | 1 cut(s) | 463 |
| Bso31I | GGTCTC | 1 cut(s) | 1061 |
| BsoBI | CYCGRG | 1 cut(s) | 202 |
| Bsp1286I | GDGCHC | 1 cut(s) | 554 |
| Bsp143I | GATC | 8 cut(s) | 274, 292, 379, 388, 432, 526, 842, 913 |
| BspACI | CCGC | 1 cut(s) | 1163 |
| BspANI | GGCC | 1 cut(s) | 463 |
| BspCNI | CTCAG | 5 cut(s) | 30, 180, 396, 580, 947 |
| BspLI | GGNNCC | 3 cut(s) | 543, 624, 980 |
| BspMI | ACCTGC | 1 cut(s) | 1085 |
| BspPI | GGATC | 4 cut(s) | 287, 387, 427, 837 |
| BspT107I | GGYRCC | 1 cut(s) | 622 |
| BspTNI | GGTCTC | 1 cut(s) | 1061 |
| BsrFI | RCCGGY | 1 cut(s) | 463 |
| BsrI | ACTGG | 1 cut(s) | 325 |
| BssAI | RCCGGY | 1 cut(s) | 463 |
| BssECI | CCNNGG | 2 cut(s) | 296, 404 |
| BssMI | GATC | 8 cut(s) | 274, 292, 379, 388, 432, 526, 842, 913 |
| BssNI | GRCGYC | 1 cut(s) | 955 |
| BssSI | CACGAG | 1 cut(s) | 361 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst2BI | CACGAG | 1 cut(s) | 361 |
| Bst2UI | CCWGG | 2 cut(s) | 297, 310 |
| Bst6I | CTCTTC | 1 cut(s) | 1062 |
| BstACI | GRCGYC | 1 cut(s) | 955 |
| BstC8I | GCNNGC | 4 cut(s) | 612, 830, 1142, 1146 |
| BstDEI | CTNAG | 8 cut(s) | 17, 54, 143, 188, 383, 588, 824, 934 |
| BstF5I | GGATG | 4 cut(s) | 88, 135, 222, 1093 |
| BstKTI | GATC | 8 cut(s) | 277, 295, 382, 391, 435, 529, 845, 916 |
| BstMAI | GTCTC | 5 cut(s) | 348, 510, 938, 1027, 1061 |
| BstMBI | GATC | 8 cut(s) | 274, 292, 379, 388, 432, 526, 842, 913 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 310 |
| BstNI | CCWGG | 2 cut(s) | 297, 310 |
| BstNSI | RCATGY | 3 cut(s) | 596, 686, 832 |
| BstSCI | CCNGG | 3 cut(s) | 295, 308, 845 |
| BstSLI | GKGCMC | 1 cut(s) | 554 |
| BstV1I | GCAGC | 2 cut(s) | 379, 691 |
| BstX2I | RGATCY | 2 cut(s) | 379, 432 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 512 |
| BstYI | RGATCY | 2 cut(s) | 379, 432 |
| BsuRI | GGCC | 1 cut(s) | 463 |
| BtgZI | GCGATG | 1 cut(s) | 635 |
| BtrI | CACGTC | 1 cut(s) | 644 |
| BtsCI | GGATG | 4 cut(s) | 88, 135, 222, 1093 |
| BtsIMutI | CAGTG | 1 cut(s) | 391 |
| BveI | ACCTGC | 1 cut(s) | 1085 |
| Cac8I | GCNNGC | 4 cut(s) | 612, 830, 1142, 1146 |
| Cfr10I | RCCGGY | 1 cut(s) | 463 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 542 |
| CseI | GACGC | 2 cut(s) | 467, 944 |
| Csp6I | GTAC | 4 cut(s) | 704, 769, 869, 887 |
| CviAII | CATG | 8 cut(s) | 7, 152, 593, 683, 707, 714, 829, 1052 |
| CviQI | GTAC | 4 cut(s) | 704, 769, 869, 887 |
| DdeI | CTNAG | 8 cut(s) | 17, 54, 143, 188, 383, 588, 824, 934 |
| DpnI | GATC | 8 cut(s) | 276, 294, 381, 390, 434, 528, 844, 915 |
| DpnII | GATC | 8 cut(s) | 274, 292, 379, 388, 432, 526, 842, 913 |
| DraIII | CACNNNGTG | 1 cut(s) | 558 |
| DriI | GACNNNNNGTC | 1 cut(s) | 923 |
| Eam1104I | CTCTTC | 1 cut(s) | 1062 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 923 |
| EarI | CTCTTC | 1 cut(s) | 1062 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco31I | GGTCTC | 1 cut(s) | 1061 |
| Eco32I | GATATC | 1 cut(s) | 78 |
| Eco47I | GGWCC | 1 cut(s) | 542 |
| Eco88I | CYCGRG | 1 cut(s) | 202 |
| EcoRII | CCWGG | 2 cut(s) | 295, 308 |
| EcoRV | GATATC | 1 cut(s) | 78 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| FaeI | CATG | 8 cut(s) | 10, 155, 596, 686, 710, 717, 832, 1055 |
| FaqI | GGGAC | 3 cut(s) | 222, 555, 748 |
| FatI | CATG | 8 cut(s) | 6, 151, 592, 682, 706, 713, 828, 1051 |
| Fnu4HI | GCNGC | 2 cut(s) | 368, 680 |
| FokI | GGATG | 4 cut(s) | 75, 142, 229, 1100 |
| Fsp4HI | GCNGC | 2 cut(s) | 368, 680 |
| FspBI | CTAG | 4 cut(s) | 212, 530, 615, 851 |
| GluI | GCNGC | 2 cut(s) | 368, 680 |
| HaeIII | GGCC | 1 cut(s) | 463 |
| HapII | CCGG | 2 cut(s) | 464, 847 |
| HgaI | GACGC | 2 cut(s) | 467, 944 |
| Hin1I | GRCGYC | 1 cut(s) | 955 |
| Hin1II | CATG | 8 cut(s) | 10, 155, 596, 686, 710, 717, 832, 1055 |
| HindIII | AAGCTT | 1 cut(s) | 1020 |
| HinfI | GANTC | 6 cut(s) | 85, 395, 584, 736, 918, 1174 |
| HpaII | CCGG | 2 cut(s) | 464, 847 |
| HphI | GGTGA | 1 cut(s) | 431 |
| Hpy166II | GTNNAC | 2 cut(s) | 552, 771 |
| Hpy188I | TCNGA | 8 cut(s) | 129, 136, 483, 568, 589, 880, 937, 1032 |
| Hpy188III | TCNNGA | 4 cut(s) | 392, 436, 497, 1178 |
| Hpy8I | GTNNAC | 2 cut(s) | 552, 771 |
| Hpy99I | CGWCG | 1 cut(s) | 259 |
| HpyAV | CCTTC | 4 cut(s) | 61, 158, 281, 938 |
| HpyCH4IV | ACGT | 2 cut(s) | 250, 643 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 310 |
| HpyF3I | CTNAG | 8 cut(s) | 17, 54, 143, 188, 383, 588, 824, 934 |
| HpySE526I | ACGT | 2 cut(s) | 250, 643 |
| Hsp92I | GRCGYC | 1 cut(s) | 955 |
| Hsp92II | CATG | 8 cut(s) | 10, 155, 596, 686, 710, 717, 832, 1055 |
| Kzo9I | GATC | 8 cut(s) | 274, 292, 379, 388, 432, 526, 842, 913 |
| LmnI | GCTCC | 3 cut(s) | 301, 475, 984 |
| Lsp1109I | GCAGC | 2 cut(s) | 379, 691 |
| LweI | GCATC | 5 cut(s) | 37, 45, 490, 1081, 1150 |
| MaeI | CTAG | 4 cut(s) | 212, 530, 615, 851 |
| MaeII | ACGT | 2 cut(s) | 250, 643 |
| MaeIII | GTNAC | 3 cut(s) | 727, 970, 1111 |
| MalI | GATC | 8 cut(s) | 276, 294, 381, 390, 434, 528, 844, 915 |
| MboI | GATC | 8 cut(s) | 274, 292, 379, 388, 432, 526, 842, 913 |
| MboII | GAAGA | 6 cut(s) | 463, 772, 866, 910, 913, 1079 |
| MfeI | CAATTG | 1 cut(s) | 890 |
| MflI | RGATCY | 2 cut(s) | 379, 432 |
| MhlI | GDGCHC | 1 cut(s) | 554 |
| MluCI | AATT | 8 cut(s) | 25, 96, 120, 659, 890, 904, 1003, 1168 |
| MlyI | GAGTC | 3 cut(s) | 730, 912, 1168 |
| MmeI | TCCRAC | 1 cut(s) | 107 |
| MnlI | CCTC | 8 cut(s) | 175, 482, 636, 703, 931, 934, 1063, 1078 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1021 |
| MslI | CAYNNNNRTG | 3 cut(s) | 510, 776, 1130 |
| MspI | CCGG | 2 cut(s) | 464, 847 |
| MspR9I | CCNGG | 3 cut(s) | 297, 310, 847 |
| MunI | CAATTG | 1 cut(s) | 890 |
| Mva1269I | GAATGC | 1 cut(s) | 232 |
| MvaI | CCWGG | 2 cut(s) | 297, 310 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 310 |
| NciI | CCSGG | 1 cut(s) | 847 |
| NdeII | GATC | 8 cut(s) | 274, 292, 379, 388, 432, 526, 842, 913 |
| NlaIII | CATG | 8 cut(s) | 10, 155, 596, 686, 710, 717, 832, 1055 |
| NlaIV | GGNNCC | 3 cut(s) | 543, 624, 980 |
| NspI | RCATGY | 3 cut(s) | 596, 686, 832 |
| PaeI | GCATGC | 1 cut(s) | 832 |
| PaqCI | CACCTGC | 1 cut(s) | 1085 |
| PctI | GAATGC | 1 cut(s) | 232 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1021 |
| PfeI | GAWTC | 3 cut(s) | 85, 395, 584 |
| PflFI | GACNNNGTC | 1 cut(s) | 642 |
| PkrI | GCNGC | 2 cut(s) | 369, 681 |
| PleI | GAGTC | 3 cut(s) | 730, 912, 1168 |
| PpsI | GAGTC | 3 cut(s) | 730, 912, 1168 |
| Psp6I | CCWGG | 2 cut(s) | 295, 308 |
| PspGI | CCWGG | 2 cut(s) | 295, 308 |
| PspN4I | GGNNCC | 3 cut(s) | 543, 624, 980 |
| PspPI | GGNCC | 2 cut(s) | 461, 542 |
| PsuI | RGATCY | 2 cut(s) | 379, 432 |
| PsyI | GACNNNGTC | 1 cut(s) | 642 |
| RsaI | GTAC | 4 cut(s) | 705, 770, 870, 888 |
| RsaNI | GTAC | 4 cut(s) | 704, 769, 869, 887 |
| RseI | CAYNNNNRTG | 3 cut(s) | 510, 776, 1130 |
| SatI | GCNGC | 2 cut(s) | 368, 680 |
| Sau3AI | GATC | 8 cut(s) | 274, 292, 379, 388, 432, 526, 842, 913 |
| Sau96I | GGNCC | 2 cut(s) | 461, 542 |
| SchI | GAGTC | 3 cut(s) | 730, 912, 1168 |
| ScrFI | CCNGG | 3 cut(s) | 297, 310, 847 |
| SduI | GDGCHC | 1 cut(s) | 554 |
| SfaNI | GCATC | 5 cut(s) | 37, 45, 490, 1081, 1150 |
| SinI | GGWCC | 1 cut(s) | 542 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 510, 776, 1130 |
| SmlI | CTYRAG | 1 cut(s) | 374 |
| SmoI | CTYRAG | 1 cut(s) | 374 |
| SphI | GCATGC | 1 cut(s) | 832 |
| Sse9I | AATT | 8 cut(s) | 25, 96, 120, 659, 890, 904, 1003, 1168 |
| SsiI | CCGC | 1 cut(s) | 1163 |
| SspMI | CTAG | 4 cut(s) | 212, 530, 615, 851 |
| StyD4I | CCNGG | 3 cut(s) | 295, 308, 845 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaiI | ACGT | 2 cut(s) | 253, 646 |
| TaqI | TCGA | 3 cut(s) | 841, 916, 1101 |
| TasI | AATT | 8 cut(s) | 25, 96, 120, 659, 890, 904, 1003, 1168 |
| TatI | WGTACW | 2 cut(s) | 768, 886 |
| TfiI | GAWTC | 3 cut(s) | 85, 395, 584 |
| TscAI | CASTG | 1 cut(s) | 391 |
| TseI | GCWGC | 2 cut(s) | 367, 679 |
| TspDTI | ATGAA | 6 cut(s) | 17, 131, 140, 794, 1040, 1080 |
| TspRI | CASTG | 1 cut(s) | 391 |
| Tth111I | GACNNNGTC | 1 cut(s) | 642 |
| VneI | GTGCAC | 1 cut(s) | 550 |
| VpaK11BI | GGWCC | 1 cut(s) | 542 |
| XapI | RAATTY | 4 cut(s) | 25, 659, 904, 1003 |
| XceI | RCATGY | 3 cut(s) | 596, 686, 832 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 552 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1021 |
| XspI | CTAG | 4 cut(s) | 212, 530, 615, 851 |