ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 280 |
| AciI | CCGC | 2 cut(s) | 170, 362 |
| AfaI | GTAC | 2 cut(s) | 45, 81 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 236, 699 |
| AgsI | TTSAA | 2 cut(s) | 320, 442 |
| AjiI | CACGTC | 1 cut(s) | 479 |
| AjnI | CCWGG | 1 cut(s) | 185 |
| AleI | CACNNNNGTG | 1 cut(s) | 726 |
| AluBI | AGCT | 3 cut(s) | 10, 266, 324 |
| AluI | AGCT | 3 cut(s) | 10, 266, 324 |
| Alw26I | GTCTC | 1 cut(s) | 437 |
| Ama87I | CYCGRG | 1 cut(s) | 210 |
| AoxI | GGCC | 1 cut(s) | 690 |
| ApeKI | GCWGC | 2 cut(s) | 64, 206 |
| AspS9I | GGNCC | 2 cut(s) | 331, 690 |
| AsuC2I | CCSGG | 5 cut(s) | 74, 144, 211, 212, 497 |
| AsuHPI | GGTGA | 2 cut(s) | 560, 656 |
| AvaI | CYCGRG | 1 cut(s) | 210 |
| AvaII | GGWCC | 1 cut(s) | 331 |
| BaeGI | GKGCMC | 1 cut(s) | 502 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 383, 416 |
| BanI | GGYRCC | 1 cut(s) | 280 |
| BauI | CACGAG | 1 cut(s) | 722 |
| BbsI | GAAGAC | 1 cut(s) | 114 |
| BbvI | GCAGC | 2 cut(s) | 76, 218 |
| BccI | CCATC | 4 cut(s) | 293, 342, 363, 748 |
| BceAI | ACGGC | 1 cut(s) | 253 |
| BciT130I | CCWGG | 1 cut(s) | 187 |
| BclI | TGATCA | 2 cut(s) | 487, 718 |
| BcnI | CCSGG | 5 cut(s) | 74, 144, 211, 212, 497 |
| BcoDI | GTCTC | 1 cut(s) | 437 |
| BfmI | CTRYAG | 1 cut(s) | 204 |
| BisI | GCNGC | 2 cut(s) | 65, 207 |
| BlsI | GCNGC | 2 cut(s) | 66, 208 |
| Bme1390I | CCNGG | 6 cut(s) | 74, 144, 187, 211, 212, 497 |
| Bme18I | GGWCC | 1 cut(s) | 331 |
| BmeT110I | CYCGRG | 1 cut(s) | 210 |
| BmgBI | CACGTC | 1 cut(s) | 479 |
| BmgT120I | GGNCC | 2 cut(s) | 331, 690 |
| BmiI | GGNNCC | 2 cut(s) | 282, 332 |
| BmrFI | CCNGG | 6 cut(s) | 74, 144, 187, 211, 212, 497 |
| BmsI | GCATC | 1 cut(s) | 51 |
| BpiI | GAAGAC | 1 cut(s) | 114 |
| BpmI | CTGGAG | 1 cut(s) | 608 |
| BpuMI | CCSGG | 5 cut(s) | 74, 144, 211, 212, 497 |
| BsaAI | YACGTR | 1 cut(s) | 47 |
| BsaJI | CCNNGG | 3 cut(s) | 21, 210, 621 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 236, 699 |
| Bse118I | RCCGGY | 1 cut(s) | 283 |
| Bse1I | ACTGG | 2 cut(s) | 591, 611 |
| Bse3DI | GCAATG | 1 cut(s) | 88 |
| BseBI | CCWGG | 1 cut(s) | 187 |
| BseDI | CCNNGG | 3 cut(s) | 21, 210, 621 |
| BseGI | GGATG | 4 cut(s) | 82, 304, 374, 759 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 236, 699 |
| BseMI | GCAATG | 1 cut(s) | 88 |
| BseNI | ACTGG | 2 cut(s) | 591, 611 |
| BseRI | GAGGAG | 2 cut(s) | 605, 608 |
| BseSI | GKGCMC | 1 cut(s) | 502 |
| BseXI | GCAGC | 2 cut(s) | 76, 218 |
| BshFI | GGCC | 1 cut(s) | 692 |
| BshNI | GGYRCC | 1 cut(s) | 280 |
| BsiHKCI | CYCGRG | 1 cut(s) | 210 |
| BsiSI | CCGG | 5 cut(s) | 73, 144, 211, 284, 496 |
| BslFI | GGGAC | 1 cut(s) | 126 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 236, 699 |
| BsmAI | GTCTC | 1 cut(s) | 437 |
| BsmBI | CGTCTC | 1 cut(s) | 437 |
| BsmFI | GGGAC | 1 cut(s) | 126 |
| BsnI | GGCC | 1 cut(s) | 692 |
| BsoBI | CYCGRG | 1 cut(s) | 210 |
| Bsp1286I | GDGCHC | 1 cut(s) | 502 |
| Bsp143I | GATC | 4 cut(s) | 94, 241, 487, 718 |
| BspACI | CCGC | 2 cut(s) | 170, 362 |
| BspANI | GGCC | 1 cut(s) | 692 |
| BspLI | GGNNCC | 2 cut(s) | 282, 332 |
| BspMAI | CTGCAG | 1 cut(s) | 208 |
| BspT107I | GGYRCC | 1 cut(s) | 280 |
| BsrDI | GCAATG | 1 cut(s) | 88 |
| BsrFI | RCCGGY | 1 cut(s) | 283 |
| BsrI | ACTGG | 2 cut(s) | 591, 611 |
| BssAI | RCCGGY | 1 cut(s) | 283 |
| BssECI | CCNNGG | 3 cut(s) | 21, 210, 621 |
| BssMI | GATC | 4 cut(s) | 94, 241, 487, 718 |
| BssSI | CACGAG | 1 cut(s) | 722 |
| BssT1I | CCWWGG | 1 cut(s) | 621 |
| Bst2BI | CACGAG | 1 cut(s) | 722 |
| Bst2UI | CCWGG | 1 cut(s) | 187 |
| Bst4CI | ACNGT | 2 cut(s) | 35, 686 |
| BstBAI | YACGTR | 1 cut(s) | 47 |
| BstC8I | GCNNGC | 1 cut(s) | 158 |
| BstDEI | CTNAG | 2 cut(s) | 83, 657 |
| BstF5I | GGATG | 4 cut(s) | 82, 304, 374, 759 |
| BstKTI | GATC | 4 cut(s) | 97, 244, 490, 721 |
| BstMAI | GTCTC | 1 cut(s) | 437 |
| BstMBI | GATC | 4 cut(s) | 94, 241, 487, 718 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 64, 272 |
| BstNI | CCWGG | 1 cut(s) | 187 |
| BstSCI | CCNGG | 6 cut(s) | 72, 142, 185, 209, 210, 495 |
| BstSFI | CTRYAG | 1 cut(s) | 204 |
| BstSLI | GKGCMC | 1 cut(s) | 502 |
| BstSNI | TACGTA | 1 cut(s) | 47 |
| BstV1I | GCAGC | 2 cut(s) | 76, 218 |
| BstV2I | GAAGAC | 1 cut(s) | 114 |
| BsuRI | GGCC | 1 cut(s) | 692 |
| BtrI | CACGTC | 1 cut(s) | 479 |
| BtsCI | GGATG | 4 cut(s) | 82, 304, 374, 759 |
| Cac8I | GCNNGC | 1 cut(s) | 158 |
| Cfr10I | RCCGGY | 1 cut(s) | 283 |
| Cfr13I | GGNCC | 2 cut(s) | 331, 690 |
| Cfr9I | CCCGGG | 1 cut(s) | 210 |
| CsiI | ACCWGGT | 1 cut(s) | 185 |
| Csp6I | GTAC | 2 cut(s) | 44, 80 |
| CviAII | CATG | 4 cut(s) | 17, 40, 132, 245 |
| CviQI | GTAC | 2 cut(s) | 44, 80 |
| DdeI | CTNAG | 2 cut(s) | 83, 657 |
| DpnI | GATC | 4 cut(s) | 96, 243, 489, 720 |
| DpnII | GATC | 4 cut(s) | 94, 241, 487, 718 |
| Eco105I | TACGTA | 1 cut(s) | 47 |
| Eco130I | CCWWGG | 1 cut(s) | 621 |
| Eco32I | GATATC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 1 cut(s) | 331 |
| Eco88I | CYCGRG | 1 cut(s) | 210 |
| EcoRII | CCWGG | 1 cut(s) | 185 |
| EcoRV | GATATC | 1 cut(s) | 196 |
| EcoT14I | CCWWGG | 1 cut(s) | 621 |
| ErhI | CCWWGG | 1 cut(s) | 621 |
| Esp3I | CGTCTC | 1 cut(s) | 437 |
| FaeI | CATG | 4 cut(s) | 20, 43, 135, 248 |
| FaqI | GGGAC | 1 cut(s) | 126 |
| FatI | CATG | 4 cut(s) | 16, 39, 131, 244 |
| FbaI | TGATCA | 2 cut(s) | 487, 718 |
| Fnu4HI | GCNGC | 2 cut(s) | 65, 207 |
| FokI | GGATG | 4 cut(s) | 89, 311, 381, 766 |
| Fsp4HI | GCNGC | 2 cut(s) | 65, 207 |
| GluI | GCNGC | 2 cut(s) | 65, 207 |
| GsuI | CTGGAG | 1 cut(s) | 608 |
| HaeIII | GGCC | 1 cut(s) | 692 |
| HapII | CCGG | 5 cut(s) | 73, 144, 211, 284, 496 |
| Hin1II | CATG | 4 cut(s) | 20, 43, 135, 248 |
| HindIII | AAGCTT | 1 cut(s) | 322 |
| HinfI | GANTC | 4 cut(s) | 521, 541, 559, 740 |
| HpaII | CCGG | 5 cut(s) | 73, 144, 211, 284, 496 |
| HphI | GGTGA | 2 cut(s) | 560, 656 |
| Hpy166II | GTNNAC | 1 cut(s) | 183 |
| Hpy188I | TCNGA | 5 cut(s) | 25, 193, 351, 473, 520 |
| Hpy188III | TCNNGA | 2 cut(s) | 341, 722 |
| Hpy8I | GTNNAC | 1 cut(s) | 183 |
| HpyAV | CCTTC | 2 cut(s) | 47, 743 |
| HpyCH4III | ACNGT | 2 cut(s) | 35, 686 |
| HpyCH4IV | ACGT | 4 cut(s) | 46, 179, 478, 502 |
| HpyCH4V | TGCA | 3 cut(s) | 64, 206, 508 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 64, 272 |
| HpyF3I | CTNAG | 2 cut(s) | 83, 657 |
| HpySE526I | ACGT | 4 cut(s) | 46, 179, 478, 502 |
| Hsp92II | CATG | 4 cut(s) | 20, 43, 135, 248 |
| Ksp22I | TGATCA | 2 cut(s) | 487, 718 |
| Kzo9I | GATC | 4 cut(s) | 94, 241, 487, 718 |
| LmnI | GCTCC | 1 cut(s) | 623 |
| Lsp1109I | GCAGC | 2 cut(s) | 76, 218 |
| LweI | GCATC | 1 cut(s) | 51 |
| MabI | ACCWGGT | 1 cut(s) | 185 |
| MaeII | ACGT | 4 cut(s) | 46, 179, 478, 502 |
| MaeIII | GTNAC | 2 cut(s) | 582, 625 |
| MalI | GATC | 4 cut(s) | 96, 243, 489, 720 |
| MboI | GATC | 4 cut(s) | 94, 241, 487, 718 |
| MboII | GAAGA | 4 cut(s) | 5, 114, 190, 209 |
| MfeI | CAATTG | 1 cut(s) | 445 |
| MhlI | GDGCHC | 1 cut(s) | 502 |
| MluCI | AATT | 3 cut(s) | 417, 445, 636 |
| MlyI | GAGTC | 2 cut(s) | 568, 734 |
| MmeI | TCCRAC | 1 cut(s) | 555 |
| MnlI | CCTC | 8 cut(s) | 31, 358, 467, 583, 586, 688, 718, 751 |
| MseI | TTAA | 2 cut(s) | 291, 635 |
| MslI | CAYNNNNRTG | 1 cut(s) | 726 |
| MspI | CCGG | 5 cut(s) | 73, 144, 211, 284, 496 |
| MspR9I | CCNGG | 6 cut(s) | 74, 144, 187, 211, 212, 497 |
| MunI | CAATTG | 1 cut(s) | 445 |
| MvaI | CCWGG | 1 cut(s) | 187 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 64, 272 |
| NciI | CCSGG | 5 cut(s) | 74, 144, 211, 212, 497 |
| NdeII | GATC | 4 cut(s) | 94, 241, 487, 718 |
| NlaIII | CATG | 4 cut(s) | 20, 43, 135, 248 |
| NlaIV | GGNNCC | 2 cut(s) | 282, 332 |
| OliI | CACNNNNGTG | 1 cut(s) | 726 |
| PfeI | GAWTC | 2 cut(s) | 521, 541 |
| PfoI | TCCNGGA | 2 cut(s) | 72, 142 |
| PkrI | GCNGC | 2 cut(s) | 66, 208 |
| PleI | GAGTC | 2 cut(s) | 567, 734 |
| PpsI | GAGTC | 2 cut(s) | 567, 734 |
| Ppu21I | YACGTR | 1 cut(s) | 47 |
| Psp6I | CCWGG | 1 cut(s) | 185 |
| PspGI | CCWGG | 1 cut(s) | 185 |
| PspN4I | GGNNCC | 2 cut(s) | 282, 332 |
| PspPI | GGNCC | 2 cut(s) | 331, 690 |
| PstI | CTGCAG | 1 cut(s) | 208 |
| RsaI | GTAC | 2 cut(s) | 45, 81 |
| RsaNI | GTAC | 2 cut(s) | 44, 80 |
| RseI | CAYNNNNRTG | 1 cut(s) | 726 |
| SaqAI | TTAA | 2 cut(s) | 291, 635 |
| SatI | GCNGC | 2 cut(s) | 65, 207 |
| Sau3AI | GATC | 4 cut(s) | 94, 241, 487, 718 |
| Sau96I | GGNCC | 2 cut(s) | 331, 690 |
| SchI | GAGTC | 2 cut(s) | 568, 734 |
| ScrFI | CCNGG | 6 cut(s) | 74, 144, 187, 211, 212, 497 |
| SduI | GDGCHC | 1 cut(s) | 502 |
| SexAI | ACCWGGT | 1 cut(s) | 185 |
| SfaNI | GCATC | 1 cut(s) | 51 |
| SfcI | CTRYAG | 1 cut(s) | 204 |
| SinI | GGWCC | 1 cut(s) | 331 |
| SmaI | CCCGGG | 1 cut(s) | 212 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 726 |
| SnaBI | TACGTA | 1 cut(s) | 47 |
| Sse9I | AATT | 3 cut(s) | 417, 445, 636 |
| SsiI | CCGC | 2 cut(s) | 170, 362 |
| StyD4I | CCNGG | 6 cut(s) | 72, 142, 185, 209, 210, 495 |
| StyI | CCWWGG | 1 cut(s) | 621 |
| TaaI | ACNGT | 2 cut(s) | 35, 686 |
| TaiI | ACGT | 4 cut(s) | 49, 182, 481, 505 |
| TaqI | TCGA | 1 cut(s) | 380 |
| TasI | AATT | 3 cut(s) | 417, 445, 636 |
| TatI | WGTACW | 1 cut(s) | 79 |
| TfiI | GAWTC | 2 cut(s) | 521, 541 |
| Tru1I | TTAA | 2 cut(s) | 291, 635 |
| Tru9I | TTAA | 2 cut(s) | 291, 635 |
| TseI | GCWGC | 2 cut(s) | 64, 206 |
| TspDTI | ATGAA | 5 cut(s) | 5, 17, 209, 437, 656 |
| TspMI | CCCGGG | 1 cut(s) | 210 |
| VpaK11BI | GGWCC | 1 cut(s) | 331 |
| XmaI | CCCGGG | 1 cut(s) | 210 |