ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 251 |
| AccB1I | GGYRCC | 2 cut(s) | 251, 649 |
| AccII | CGCG | 1 cut(s) | 194 |
| AciI | CCGC | 6 cut(s) | 194, 444, 469, 701, 727, 1030 |
| AclWI | GGATC | 2 cut(s) | 12, 594 |
| AcoI | YGGCCR | 1 cut(s) | 470 |
| AcsI | RAATTY | 1 cut(s) | 734 |
| AcuI | CTGAAG | 1 cut(s) | 86 |
| AdeI | CACNNNGTG | 1 cut(s) | 953 |
| AfaI | GTAC | 6 cut(s) | 253, 343, 601, 694, 913, 957 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 261 |
| AgsI | TTSAA | 6 cut(s) | 245, 439, 546, 733, 740, 886 |
| AluBI | AGCT | 3 cut(s) | 241, 976, 996 |
| AluI | AGCT | 3 cut(s) | 241, 976, 996 |
| Alw21I | GWGCWC | 1 cut(s) | 82 |
| Alw26I | GTCTC | 1 cut(s) | 808 |
| AlwI | GGATC | 2 cut(s) | 12, 594 |
| Ama87I | CYCGRG | 1 cut(s) | 530 |
| AoxI | GGCC | 2 cut(s) | 470, 889 |
| ApeKI | GCWGC | 2 cut(s) | 754, 1027 |
| ApoI | RAATTY | 1 cut(s) | 734 |
| Asp718I | GGTACC | 1 cut(s) | 251 |
| AspLEI | GCGC | 2 cut(s) | 64, 194 |
| AspS9I | GGNCC | 2 cut(s) | 461, 889 |
| AsuHPI | GGTGA | 2 cut(s) | 617, 790 |
| AsuII | TTCGAA | 1 cut(s) | 141 |
| AvaI | CYCGRG | 1 cut(s) | 530 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 267, 285, 300, 318 |
| BanI | GGYRCC | 2 cut(s) | 251, 649 |
| BbsI | GAAGAC | 1 cut(s) | 931 |
| Bbv12I | GWGCWC | 1 cut(s) | 82 |
| BbvI | GCAGC | 1 cut(s) | 766 |
| BccI | CCATC | 1 cut(s) | 952 |
| BceAI | ACGGC | 1 cut(s) | 637 |
| BciVI | GTATCC | 1 cut(s) | 286 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcoDI | GTCTC | 1 cut(s) | 808 |
| BfaI | CTAG | 4 cut(s) | 524, 633, 849, 915 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BfuI | GTATCC | 1 cut(s) | 286 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 478 |
| BglII | AGATCT | 2 cut(s) | 432, 526 |
| BisI | GCNGC | 3 cut(s) | 470, 755, 1028 |
| BlsI | GCNGC | 3 cut(s) | 471, 756, 1029 |
| BmcAI | AGTACT | 1 cut(s) | 694 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmeT110I | CYCGRG | 1 cut(s) | 530 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 889 |
| BmiI | GGNNCC | 4 cut(s) | 253, 303, 651, 989 |
| BmrI | ACTGGG | 1 cut(s) | 306 |
| BmsI | GCATC | 2 cut(s) | 37, 274 |
| BmuI | ACTGGG | 1 cut(s) | 306 |
| BpiI | GAAGAC | 1 cut(s) | 931 |
| BpmI | CTGGAG | 3 cut(s) | 244, 366, 974 |
| Bpu14I | TTCGAA | 1 cut(s) | 141 |
| BsaJI | CCNNGG | 1 cut(s) | 404 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 261 |
| Bse118I | RCCGGY | 2 cut(s) | 203, 891 |
| Bse1I | ACTGG | 2 cut(s) | 301, 349 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| BseDI | CCNNGG | 1 cut(s) | 404 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseMII | CTCAG | 3 cut(s) | 95, 579, 923 |
| BseNI | ACTGG | 2 cut(s) | 301, 349 |
| BseRI | GAGGAG | 1 cut(s) | 1025 |
| BseXI | GCAGC | 1 cut(s) | 766 |
| Bsh1236I | CGCG | 1 cut(s) | 194 |
| BshFI | GGCC | 2 cut(s) | 472, 891 |
| BshNI | GGYRCC | 2 cut(s) | 251, 649 |
| BsiHKAI | GWGCWC | 1 cut(s) | 82 |
| BsiHKCI | CYCGRG | 1 cut(s) | 530 |
| BsiSI | CCGG | 3 cut(s) | 204, 459, 892 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BsmAI | GTCTC | 1 cut(s) | 808 |
| BsmI | GAATGC | 1 cut(s) | 906 |
| BsnI | GGCC | 2 cut(s) | 472, 891 |
| BsoBI | CYCGRG | 1 cut(s) | 530 |
| Bsp119I | TTCGAA | 1 cut(s) | 141 |
| Bsp1286I | GDGCHC | 1 cut(s) | 82 |
| Bsp1407I | TGTACA | 1 cut(s) | 955 |
| Bsp143I | GATC | 8 cut(s) | 4, 120, 379, 432, 453, 526, 586, 664 |
| BspACI | CCGC | 6 cut(s) | 194, 444, 469, 701, 727, 1030 |
| BspANI | GGCC | 2 cut(s) | 472, 891 |
| BspCNI | CTCAG | 3 cut(s) | 94, 578, 924 |
| BspFNI | CGCG | 1 cut(s) | 194 |
| BspLI | GGNNCC | 4 cut(s) | 253, 303, 651, 989 |
| BspPI | GGATC | 2 cut(s) | 12, 594 |
| BspT104I | TTCGAA | 1 cut(s) | 141 |
| BspT107I | GGYRCC | 2 cut(s) | 251, 649 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrFI | RCCGGY | 2 cut(s) | 203, 891 |
| BsrGI | TGTACA | 1 cut(s) | 955 |
| BsrI | ACTGG | 2 cut(s) | 301, 349 |
| BssAI | RCCGGY | 2 cut(s) | 203, 891 |
| BssECI | CCNNGG | 1 cut(s) | 404 |
| BssMI | GATC | 8 cut(s) | 4, 120, 379, 432, 453, 526, 586, 664 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst4CI | ACNGT | 1 cut(s) | 280 |
| Bst6I | CTCTTC | 1 cut(s) | 918 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 649 |
| BstAUI | TGTACA | 1 cut(s) | 955 |
| BstBI | TTCGAA | 1 cut(s) | 141 |
| BstC8I | GCNNGC | 1 cut(s) | 893 |
| BstDEI | CTNAG | 5 cut(s) | 17, 81, 415, 565, 932 |
| BstFNI | CGCG | 1 cut(s) | 194 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 2 cut(s) | 64, 194 |
| BstKTI | GATC | 8 cut(s) | 7, 123, 382, 435, 456, 529, 589, 667 |
| BstMAI | GTCTC | 1 cut(s) | 808 |
| BstMBI | GATC | 8 cut(s) | 4, 120, 379, 432, 453, 526, 586, 664 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 200, 478, 649 |
| BstUI | CGCG | 1 cut(s) | 194 |
| BstV1I | GCAGC | 1 cut(s) | 766 |
| BstV2I | GAAGAC | 1 cut(s) | 931 |
| BstX2I | RGATCY | 3 cut(s) | 4, 432, 526 |
| BstYI | RGATCY | 3 cut(s) | 4, 432, 526 |
| BsuI | GTATCC | 1 cut(s) | 286 |
| BsuRI | GGCC | 2 cut(s) | 472, 891 |
| BtsIMutI | CAGTG | 1 cut(s) | 285 |
| Cac8I | GCNNGC | 1 cut(s) | 893 |
| CfoI | GCGC | 2 cut(s) | 64, 194 |
| Cfr10I | RCCGGY | 2 cut(s) | 203, 891 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 889 |
| Csp6I | GTAC | 6 cut(s) | 252, 342, 600, 693, 912, 956 |
| CviAII | CATG | 8 cut(s) | 173, 309, 363, 391, 609, 629, 668, 789 |
| CviQI | GTAC | 6 cut(s) | 252, 342, 600, 693, 912, 956 |
| DdeI | CTNAG | 5 cut(s) | 17, 81, 415, 565, 932 |
| DpnI | GATC | 8 cut(s) | 6, 122, 381, 434, 455, 528, 588, 666 |
| DpnII | GATC | 8 cut(s) | 4, 120, 379, 432, 453, 526, 586, 664 |
| DraIII | CACNNNGTG | 1 cut(s) | 953 |
| EaeI | YGGCCR | 1 cut(s) | 470 |
| Eam1104I | CTCTTC | 1 cut(s) | 918 |
| EarI | CTCTTC | 1 cut(s) | 918 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco57I | CTGAAG | 1 cut(s) | 86 |
| Eco88I | CYCGRG | 1 cut(s) | 530 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| EcoT22I | ATGCAT | 1 cut(s) | 846 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| FaeI | CATG | 8 cut(s) | 176, 312, 366, 394, 612, 632, 671, 792 |
| FatI | CATG | 8 cut(s) | 172, 308, 362, 390, 608, 628, 667, 788 |
| FauI | CCCGC | 2 cut(s) | 187, 437 |
| FauNDI | CATATG | 1 cut(s) | 897 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| Fnu4HI | GCNGC | 3 cut(s) | 470, 755, 1028 |
| Fsp4HI | GCNGC | 3 cut(s) | 470, 755, 1028 |
| FspBI | CTAG | 4 cut(s) | 524, 633, 849, 915 |
| GlaI | GCGC | 2 cut(s) | 63, 193 |
| GluI | GCNGC | 3 cut(s) | 470, 755, 1028 |
| GsuI | CTGGAG | 3 cut(s) | 244, 366, 974 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 2 cut(s) | 472, 891 |
| HapII | CCGG | 3 cut(s) | 204, 459, 892 |
| HhaI | GCGC | 2 cut(s) | 64, 194 |
| Hin1II | CATG | 8 cut(s) | 176, 312, 366, 394, 612, 632, 671, 792 |
| Hin6I | GCGC | 2 cut(s) | 62, 192 |
| HinP1I | GCGC | 2 cut(s) | 62, 192 |
| HincII | GTYRAC | 1 cut(s) | 136 |
| HindII | GTYRAC | 1 cut(s) | 136 |
| HindIII | AAGCTT | 1 cut(s) | 239 |
| HinfI | GANTC | 6 cut(s) | 36, 85, 395, 492, 659, 853 |
| HpaII | CCGG | 3 cut(s) | 204, 459, 892 |
| HphI | GGTGA | 2 cut(s) | 617, 790 |
| Hpy166II | GTNNAC | 3 cut(s) | 136, 518, 956 |
| Hpy188I | TCNGA | 6 cut(s) | 84, 318, 388, 568, 658, 664 |
| Hpy188III | TCNNGA | 4 cut(s) | 8, 223, 436, 991 |
| Hpy8I | GTNNAC | 3 cut(s) | 136, 518, 956 |
| Hpy99I | CGWCG | 1 cut(s) | 156 |
| HpyAV | CCTTC | 3 cut(s) | 61, 615, 775 |
| HpyCH4III | ACNGT | 1 cut(s) | 280 |
| HpyCH4IV | ACGT | 2 cut(s) | 151, 715 |
| HpyCH4V | TGCA | 7 cut(s) | 30, 42, 176, 643, 710, 754, 844 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 200, 478, 649 |
| HpyF3I | CTNAG | 5 cut(s) | 17, 81, 415, 565, 932 |
| HpySE526I | ACGT | 2 cut(s) | 151, 715 |
| Hsp92II | CATG | 8 cut(s) | 176, 312, 366, 394, 612, 632, 671, 792 |
| HspAI | GCGC | 2 cut(s) | 62, 192 |
| KpnI | GGTACC | 1 cut(s) | 255 |
| KroI | GCCGGC | 1 cut(s) | 891 |
| KroNI | GCCGGC | 1 cut(s) | 893 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| Kzo9I | GATC | 8 cut(s) | 4, 120, 379, 432, 453, 526, 586, 664 |
| LmnI | GCTCC | 1 cut(s) | 993 |
| Lsp1109I | GCAGC | 1 cut(s) | 766 |
| LweI | GCATC | 2 cut(s) | 37, 274 |
| MaeI | CTAG | 4 cut(s) | 524, 633, 849, 915 |
| MaeII | ACGT | 2 cut(s) | 151, 715 |
| MaeIII | GTNAC | 5 cut(s) | 636, 767, 808, 826, 927 |
| MalI | GATC | 8 cut(s) | 6, 122, 381, 434, 455, 528, 588, 666 |
| MboI | GATC | 8 cut(s) | 4, 120, 379, 432, 453, 526, 586, 664 |
| MboII | GAAGA | 5 cut(s) | 130, 463, 844, 931, 935 |
| MflI | RGATCY | 3 cut(s) | 4, 432, 526 |
| MhlI | GDGCHC | 1 cut(s) | 82 |
| MluCI | AATT | 4 cut(s) | 25, 246, 368, 734 |
| MlyI | GAGTC | 1 cut(s) | 653 |
| MmeI | TCCRAC | 3 cut(s) | 411, 564, 900 |
| MnlI | CCTC | 8 cut(s) | 26, 51, 175, 255, 493, 573, 871, 1003 |
| Mph1103I | ATGCAT | 1 cut(s) | 846 |
| MroNI | GCCGGC | 1 cut(s) | 891 |
| MseI | TTAA | 2 cut(s) | 188, 426 |
| MslI | CAYNNNNRTG | 1 cut(s) | 177 |
| MspA1I | CMGCKG | 2 cut(s) | 703, 1030 |
| MspI | CCGG | 3 cut(s) | 204, 459, 892 |
| Mva1269I | GAATGC | 1 cut(s) | 906 |
| MvnI | CGCG | 1 cut(s) | 194 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 200, 478, 649 |
| NaeI | GCCGGC | 1 cut(s) | 893 |
| NdeI | CATATG | 1 cut(s) | 897 |
| NdeII | GATC | 8 cut(s) | 4, 120, 379, 432, 453, 526, 586, 664 |
| NgoMIV | GCCGGC | 1 cut(s) | 891 |
| NlaIII | CATG | 8 cut(s) | 176, 312, 366, 394, 612, 632, 671, 792 |
| NlaIV | GGNNCC | 4 cut(s) | 253, 303, 651, 989 |
| NmuCI | GTSAC | 1 cut(s) | 767 |
| NsiI | ATGCAT | 1 cut(s) | 846 |
| NspV | TTCGAA | 1 cut(s) | 141 |
| PctI | GAATGC | 1 cut(s) | 906 |
| PdiI | GCCGGC | 1 cut(s) | 893 |
| PfeI | GAWTC | 5 cut(s) | 36, 85, 395, 492, 853 |
| PkrI | GCNGC | 3 cut(s) | 471, 756, 1029 |
| PleI | GAGTC | 1 cut(s) | 653 |
| PpsI | GAGTC | 1 cut(s) | 653 |
| PspN4I | GGNNCC | 4 cut(s) | 253, 303, 651, 989 |
| PspPI | GGNCC | 2 cut(s) | 461, 889 |
| PsuI | RGATCY | 3 cut(s) | 4, 432, 526 |
| RsaI | GTAC | 6 cut(s) | 253, 343, 601, 694, 913, 957 |
| RsaNI | GTAC | 6 cut(s) | 252, 342, 600, 693, 912, 956 |
| RseI | CAYNNNNRTG | 1 cut(s) | 177 |
| SaqAI | TTAA | 2 cut(s) | 188, 426 |
| SatI | GCNGC | 3 cut(s) | 470, 755, 1028 |
| Sau3AI | GATC | 8 cut(s) | 4, 120, 379, 432, 453, 526, 586, 664 |
| Sau96I | GGNCC | 2 cut(s) | 461, 889 |
| ScaI | AGTACT | 1 cut(s) | 694 |
| SchI | GAGTC | 1 cut(s) | 653 |
| SduI | GDGCHC | 1 cut(s) | 82 |
| SfaNI | GCATC | 2 cut(s) | 37, 274 |
| SfuI | TTCGAA | 1 cut(s) | 141 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 177 |
| Sse9I | AATT | 4 cut(s) | 25, 246, 368, 734 |
| SsiI | CCGC | 6 cut(s) | 194, 444, 469, 701, 727, 1030 |
| SspMI | CTAG | 4 cut(s) | 524, 633, 849, 915 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaaI | ACNGT | 1 cut(s) | 280 |
| TaiI | ACGT | 2 cut(s) | 154, 718 |
| TaqI | TCGA | 2 cut(s) | 141, 260 |
| TasI | AATT | 4 cut(s) | 25, 246, 368, 734 |
| TatI | WGTACW | 4 cut(s) | 341, 599, 692, 955 |
| TauI | GCSGC | 1 cut(s) | 472 |
| TfiI | GAWTC | 5 cut(s) | 36, 85, 395, 492, 853 |
| Tru1I | TTAA | 2 cut(s) | 188, 426 |
| Tru9I | TTAA | 2 cut(s) | 188, 426 |
| TscAI | CASTG | 1 cut(s) | 285 |
| TseFI | GTSAC | 1 cut(s) | 767 |
| TseI | GCWGC | 2 cut(s) | 754, 1027 |
| Tsp45I | GTSAC | 1 cut(s) | 767 |
| TspDTI | ATGAA | 1 cut(s) | 597 |
| TspGWI | ACGGA | 3 cut(s) | 294, 663, 786 |
| TspRI | CASTG | 1 cut(s) | 285 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XapI | RAATTY | 1 cut(s) | 734 |
| XspI | CTAG | 4 cut(s) | 524, 633, 849, 915 |
| ZrmI | AGTACT | 1 cut(s) | 694 |
| Zsp2I | ATGCAT | 1 cut(s) | 846 |