Rmu_sc0013188.1_g000003

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013188.1
Physical Location & Seq
Reverse (-)
14468 .. 17811
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013188.1_g000003.1.cds

Sequence Viewer

Length: 1473 bp
atgagcggcggagctatcttctcccacgcagcagcggcggcgcgtgaagcccgcgcggctgctttggtcagaatcggagggcgggagtttggggtttcgaaagatagtgcagctccgacttcgtttatggaggtgttaaagctcgattcgagctggagactagaaatcgaagggatgcagagccgagagctccgagaggtggtagcgtcgcatccttgggtggttgcgggtggaggccggaggcgatgcatgtcgatggtgaggcttgggcttgggtcggatttgggtgctggatcgattggaggtagcggtgtgatgaaatggtggagaggaagagaagaagaagagaggtcgagggagaaagagagactgtgcgggtttttctggaatgatgatgtgaaacttaagatgggaacgacatctgggcatcatatggacactgtggtagagggtgttcctggcactccatcttggagaattacgggagatttcaacgaaatcttaaactgtggagagaaaattgacggtcctatctggtctaaacgccaaatgagaggcttccgggaggcgttgggctatggggatcttctagatttaaggtttcaagtaaaggagacttggcaaaccaccgatgttactggtgtccctatgtttcgggttacaacgaagatcactcatactagaatggtattggataaatggcagaaggatactttccgtgtgagacagcaaaccatgttaggaattagggggcgactagaagaattaatggagggtcaatcctcagttggtgtacaggccgaaaagcaagcgcttatgggtaggaaagcttcgaatagaaaacgaaagaatcagatacaagggttgtatgatgaggagggtacgtggtgtgaagatgatgatgggttggaaagaatggtctcttcatactttaccaagatgtttacagcttcggagttggatcatgaggctatggagactactcttgctgtaatacagccaagtgtttcacccaagatgaatgagcaactttgtctaccatattcaggagaggagattaaacaagccttgtttcaaatgtatcctacaaaatcgcccgggccggatggtatgcctcccttatttttccaacattactgggagactattagtcaggaggaacacaataagcgcgtgtgggaacaaatattttctcaggcttctgatgtagctctatgtgctagtacaaggttagctgaattccgtgttcacaatggcaaggttgggaatataagtcggagtgacagggtggtgcggtggcaacgaggcttaggctttgttatacgagattctagtggttccatgttggctaggggggctacgcctcttcgtaatcttatgtctgctgagcatgcaaaggcattggcgtgccaagcaactatgaggtttattctggatcataacatgaagccagctgtgattgagattgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

490

Amino Acids

55.13

Weight (kDa)

8.39

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Tree File
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Publication-ready

Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 1036
AccII CGCG 4 cut(s) 43, 54, 56, 1173
AclWI GGATC 4 cut(s) 301, 591, 969, 1443
AcsI RAATTY 1 cut(s) 1238
AfaI GTAC 3 cut(s) 795, 883, 1225
AfeI AGCGCT 1 cut(s) 813
AfiI CCNNNNNNNGG 2 cut(s) 199, 1046
AflII CTTAAG 1 cut(s) 404
AgsI TTSAA 3 cut(s) 493, 605, 1076
AhdI GACNNNNNGTC 1 cut(s) 1149
AjnI CCWGG 1 cut(s) 457
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 7 cut(s) 151, 361, 608, 718, 925, 971, 1136
AlwI GGATC 4 cut(s) 301, 591, 969, 1443
Ama87I CYCGRG 1 cut(s) 1097
Aor51HI AGCGCT 1 cut(s) 813
AoxI GGCC 3 cut(s) 235, 798, 1100
ApeKI GCWGC 4 cut(s) 29, 32, 59, 110
ApoI RAATTY 1 cut(s) 1238
AseI ATTAAT 1 cut(s) 767
AspLEI GCGC 4 cut(s) 43, 56, 814, 1173
AspS9I GGNCC 2 cut(s) 527, 1100
AsuC2I CCSGG 3 cut(s) 563, 1098, 1099
AsuHPI GGTGA 2 cut(s) 271, 1002
AsuII TTCGAA 2 cut(s) 98, 833
AvaI CYCGRG 1 cut(s) 1097
AvaII GGWCC 1 cut(s) 527
BaeI ACNNNNGTAYC 2 cut(s) 848, 881
BanII GRGCYC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 814, 846
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 4 cut(s) 41, 44, 46, 122
BccI CCATC 5 cut(s) 250, 403, 475, 896, 1100
BciT130I CCWGG 1 cut(s) 459
BciVI GTATCC 2 cut(s) 703, 1092
BcnI CCSGG 3 cut(s) 563, 1098, 1099
BcoDI GTCTC 7 cut(s) 151, 361, 608, 718, 925, 971, 1136
BfaI CTAG 7 cut(s) 161, 590, 681, 758, 1221, 1332, 1350
BfoI RGCGCY 1 cut(s) 815
BfrI CTTAAG 1 cut(s) 404
BfuI GTATCC 2 cut(s) 703, 1092
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 8 cut(s) 7, 30, 33, 36, 39, 57, 60, 111
BlpI GCTNAGC 1 cut(s) 1386
BlsI GCNGC 8 cut(s) 8, 31, 34, 37, 40, 58, 61, 112
Bme1390I CCNGG 4 cut(s) 459, 563, 1098, 1099
Bme18I GGWCC 1 cut(s) 527
BmeRI GACNNNNNGTC 1 cut(s) 1149
BmeT110I CYCGRG 1 cut(s) 1097
BmgT120I GGNCC 2 cut(s) 527, 1100
BmiI GGNNCC 1 cut(s) 1339
BmrFI CCNGG 4 cut(s) 459, 563, 1098, 1099
BmrI ACTGGG 1 cut(s) 1147
BmsI GCATC 4 cut(s) 165, 220, 236, 436
BmuI ACTGGG 1 cut(s) 1147
BpmI CTGGAG 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 1309
Bpu1102I GCTNAGC 1 cut(s) 1386
Bpu14I TTCGAA 2 cut(s) 98, 833
BpuMI CCSGG 3 cut(s) 563, 1098, 1099
Bsa29I ATCGAT 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 885
BsaI GGTCTC 1 cut(s) 925
BsaJI CCNNGG 2 cut(s) 215, 1097
BsaXI ACNNNNNCTCC 2 cut(s) 869, 899
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 1046
Bse1I ACTGG 2 cut(s) 643, 1142
BseBI CCWGG 1 cut(s) 459
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 215, 1097
BseGI GGATG 3 cut(s) 180, 211, 1111
BseLI CCNNNNNNNGG 2 cut(s) 199, 1046
BseMII CTCAG 3 cut(s) 798, 1208, 1377
BseNI ACTGG 2 cut(s) 643, 1142
BseRI GAGGAG 2 cut(s) 890, 1067
BseXI GCAGC 4 cut(s) 41, 44, 46, 122
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 4 cut(s) 43, 54, 56, 1173
BshFI GGCC 3 cut(s) 237, 800, 1102
BshVI ATCGAT 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 1097
BsiSI CCGG 4 cut(s) 238, 562, 1098, 1103
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 2 cut(s) 199, 1046
BsmAI GTCTC 7 cut(s) 151, 361, 608, 718, 925, 971, 1136
BsmFI GGGAC 1 cut(s) 629
BsnI GGCC 3 cut(s) 237, 800, 1102
Bso31I GGTCTC 1 cut(s) 925
BsoBI CYCGRG 1 cut(s) 1097
Bsp119I TTCGAA 2 cut(s) 98, 833
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 793
Bsp143I GATC 5 cut(s) 293, 583, 669, 961, 1435
Bsp1720I GCTNAGC 1 cut(s) 1386
BspANI GGCC 3 cut(s) 237, 800, 1102
BspCNI CTCAG 3 cut(s) 797, 1207, 1378
BspDI ATCGAT 1 cut(s) 296
BspFNI CGCG 4 cut(s) 43, 54, 56, 1173
BspHI TCATGA 1 cut(s) 964
BspLI GGNNCC 1 cut(s) 1339
BspPI GGATC 4 cut(s) 301, 591, 969, 1443
BspT104I TTCGAA 2 cut(s) 98, 833
BspTI CTTAAG 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 925
BsrBI CCGCTC 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 2 cut(s) 643, 1142
BssECI CCNNGG 2 cut(s) 215, 1097
BssMI GATC 5 cut(s) 293, 583, 669, 961, 1435
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 4 cut(s) 372, 442, 509, 527
Bst6I CTCTTC 4 cut(s) 328, 339, 928, 1371
BstAFI CTTAAG 1 cut(s) 404
BstAUI TGTACA 1 cut(s) 793
BstBAI YACGTR 1 cut(s) 885
BstBI TTCGAA 2 cut(s) 98, 833
BstC8I GCNNGC 5 cut(s) 52, 810, 1392, 1408, 1452
BstDEI CTNAG 4 cut(s) 784, 1194, 1309, 1386
BstF5I GGATG 3 cut(s) 180, 211, 1111
BstFNI CGCG 4 cut(s) 43, 54, 56, 1173
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 4 cut(s) 43, 56, 814, 1173
BstKTI GATC 5 cut(s) 296, 586, 672, 964, 1438
BstMAI GTCTC 7 cut(s) 151, 361, 608, 718, 925, 971, 1136
BstMBI GATC 5 cut(s) 293, 583, 669, 961, 1435
BstMWI GCNNNNNNNGC 8 cut(s) 35, 38, 47, 56, 1217, 1355, 1391, 1412
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 2 cut(s) 253, 1394
BstSCI CCNGG 4 cut(s) 457, 561, 1096, 1097
BstUI CGCG 4 cut(s) 43, 54, 56, 1173
BstV1I GCAGC 4 cut(s) 41, 44, 46, 122
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
Bsu15I ATCGAT 1 cut(s) 296
BsuI GTATCC 2 cut(s) 703, 1092
BsuRI GGCC 3 cut(s) 237, 800, 1102
BsuTUI ATCGAT 1 cut(s) 296
BtgZI GCGATG 1 cut(s) 259
BtsCI GGATG 3 cut(s) 180, 211, 1111
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 5 cut(s) 52, 810, 1392, 1408, 1452
CciI TCATGA 1 cut(s) 964
CfoI GCGC 4 cut(s) 43, 56, 814, 1173
Cfr13I GGNCC 2 cut(s) 527, 1100
Cfr9I CCCGGG 1 cut(s) 1097
ClaI ATCGAT 1 cut(s) 296
CseI GACGC 1 cut(s) 195
Csp6I GTAC 3 cut(s) 794, 882, 1224
CviAII CATG 6 cut(s) 250, 736, 965, 1342, 1391, 1444
CviQI GTAC 3 cut(s) 794, 882, 1224
DdeI CTNAG 4 cut(s) 784, 1194, 1309, 1386
DpnI GATC 5 cut(s) 295, 585, 671, 963, 1437
DpnII GATC 5 cut(s) 293, 583, 669, 961, 1435
DriI GACNNNNNGTC 1 cut(s) 1149
Eam1104I CTCTTC 4 cut(s) 328, 339, 928, 1371
Eam1105I GACNNNNNGTC 1 cut(s) 1149
EarI CTCTTC 4 cut(s) 328, 339, 928, 1371
EciI GGCGGA 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 925
Eco47I GGWCC 1 cut(s) 527
Eco47III AGCGCT 1 cut(s) 813
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 1097
EcoICRI GAGCTC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 1238
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 215
EcoT22I ATGCAT 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 6 cut(s) 253, 739, 968, 1345, 1394, 1447
FaqI GGGAC 1 cut(s) 629
FatI CATG 6 cut(s) 249, 735, 964, 1341, 1390, 1443
FauI CCCGC 4 cut(s) 59, 75, 220, 368
FauNDI CATATG 1 cut(s) 432
FblI GTMKAC 1 cut(s) 1036
Fnu4HI GCNGC 8 cut(s) 7, 30, 33, 36, 39, 57, 60, 111
FokI GGATG 3 cut(s) 187, 198, 1118
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 8 cut(s) 7, 30, 33, 36, 39, 57, 60, 111
FspBI CTAG 7 cut(s) 161, 590, 681, 758, 1221, 1332, 1350
GlaI GCGC 4 cut(s) 42, 55, 813, 1172
GluI GCNGC 8 cut(s) 7, 30, 33, 36, 39, 57, 60, 111
GsuI CTGGAG 1 cut(s) 175
HaeII RGCGCY 1 cut(s) 815
HaeIII GGCC 3 cut(s) 237, 800, 1102
HapII CCGG 4 cut(s) 238, 562, 1098, 1103
HgaI GACGC 1 cut(s) 195
HhaI GCGC 4 cut(s) 43, 56, 814, 1173
Hin1II CATG 6 cut(s) 253, 739, 968, 1345, 1394, 1447
Hin6I GCGC 4 cut(s) 41, 54, 812, 1171
HinP1I GCGC 4 cut(s) 41, 54, 812, 1171
HindIII AAGCTT 1 cut(s) 828
HinfI GANTC 4 cut(s) 72, 146, 850, 1328
HpaII CCGG 4 cut(s) 238, 562, 1098, 1103
HphI GGTGA 2 cut(s) 271, 1002
Hpy166II GTNNAC 4 cut(s) 794, 945, 1037, 1249
Hpy188I TCNGA 9 cut(s) 71, 77, 117, 194, 280, 855, 955, 1204, 1278
Hpy188III TCNNGA 6 cut(s) 385, 590, 965, 1047, 1154, 1433
Hpy8I GTNNAC 4 cut(s) 794, 945, 1037, 1249
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 164, 700
HpyCH4III ACNGT 4 cut(s) 372, 442, 509, 527
HpyCH4IV ACGT 1 cut(s) 884
HpyCH4V TGCA 4 cut(s) 110, 178, 249, 1394
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 38, 47, 56, 1217, 1355, 1391, 1412
HpyF3I CTNAG 4 cut(s) 784, 1194, 1309, 1386
HpySE526I ACGT 1 cut(s) 884
Hsp92II CATG 6 cut(s) 253, 739, 968, 1345, 1394, 1447
HspAI GCGC 4 cut(s) 41, 54, 812, 1171
Kzo9I GATC 5 cut(s) 293, 583, 669, 961, 1435
LmnI GCTCC 3 cut(s) 11, 118, 195
Lsp1109I GCAGC 4 cut(s) 41, 44, 46, 122
LweI GCATC 4 cut(s) 165, 220, 236, 436
MaeI CTAG 7 cut(s) 161, 590, 681, 758, 1221, 1332, 1350
MaeII ACGT 1 cut(s) 884
MaeIII GTNAC 3 cut(s) 634, 658, 1280
MalI GATC 5 cut(s) 295, 585, 671, 963, 1437
MbiI CCGCTC 1 cut(s) 6
MboI GATC 5 cut(s) 293, 583, 669, 961, 1435
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 5 cut(s) 477, 519, 744, 764, 1238
MmeI TCCRAC 6 cut(s) 140, 258, 888, 939, 1153, 1256
Mph1103I ATGCAT 1 cut(s) 251
MseI TTAA 6 cut(s) 137, 405, 503, 596, 767, 1059
MslI CAYNNNNRTG 2 cut(s) 254, 1405
MspA1I CMGCKG 2 cut(s) 35, 1454
MspCI CTTAAG 1 cut(s) 404
MspI CCGG 4 cut(s) 238, 562, 1098, 1103
MspR9I CCNGG 4 cut(s) 459, 563, 1098, 1099
MvaI CCWGG 1 cut(s) 459
MvnI CGCG 4 cut(s) 43, 54, 56, 1173
MwoI GCNNNNNNNGC 8 cut(s) 35, 38, 47, 56, 1217, 1355, 1391, 1412
NciI CCSGG 3 cut(s) 563, 1098, 1099
NdeI CATATG 1 cut(s) 432
NdeII GATC 5 cut(s) 293, 583, 669, 961, 1435
NlaIII CATG 6 cut(s) 253, 739, 968, 1345, 1394, 1447
NlaIV GGNNCC 1 cut(s) 1339
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 1280
NsiI ATGCAT 1 cut(s) 251
NspI RCATGY 2 cut(s) 253, 1394
NspV TTCGAA 2 cut(s) 98, 833
PaeI GCATGC 1 cut(s) 1394
PagI TCATGA 1 cut(s) 964
PfeI GAWTC 4 cut(s) 72, 146, 850, 1328
PfoI TCCNGGA 1 cut(s) 561
PkrI GCNGC 8 cut(s) 8, 31, 34, 37, 40, 58, 61, 112
Ppu21I YACGTR 1 cut(s) 885
PshBI ATTAAT 1 cut(s) 767
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 1339
PspPI GGNCC 2 cut(s) 527, 1100
PsrI GAACNNNNNNTAC 2 cut(s) 438, 470
PsuI RGATCY 1 cut(s) 583
PvuII CAGCTG 1 cut(s) 1454
RsaI GTAC 3 cut(s) 795, 883, 1225
RsaNI GTAC 3 cut(s) 794, 882, 1224
RseI CAYNNNNRTG 2 cut(s) 254, 1405
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 6 cut(s) 137, 405, 503, 596, 767, 1059
SatI GCNGC 8 cut(s) 7, 30, 33, 36, 39, 57, 60, 111
Sau3AI GATC 5 cut(s) 293, 583, 669, 961, 1435
Sau96I GGNCC 2 cut(s) 527, 1100
ScrFI CCNGG 4 cut(s) 459, 563, 1098, 1099
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 4 cut(s) 165, 220, 236, 436
SfuI TTCGAA 2 cut(s) 98, 833
SinI GGWCC 1 cut(s) 527
SmaI CCCGGG 1 cut(s) 1099
SmiMI CAYNNNNRTG 2 cut(s) 254, 1405
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SphI GCATGC 1 cut(s) 1394
SrfI GCCCGGGC 1 cut(s) 1099
Sse9I AATT 5 cut(s) 477, 519, 744, 764, 1238
SspI AATATT 1 cut(s) 1188
SspMI CTAG 7 cut(s) 161, 590, 681, 758, 1221, 1332, 1350
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 4 cut(s) 457, 561, 1096, 1097
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 4 cut(s) 372, 442, 509, 527
TaiI ACGT 1 cut(s) 887
TaqI TCGA 8 cut(s) 98, 144, 149, 168, 254, 296, 353, 833
TasI AATT 5 cut(s) 477, 519, 744, 764, 1238
TatI WGTACW 2 cut(s) 793, 1223
TauI GCSGC 4 cut(s) 9, 38, 41, 59
TfiI GAWTC 4 cut(s) 72, 146, 850, 1328
Tru1I TTAA 6 cut(s) 137, 405, 503, 596, 767, 1059
Tru9I TTAA 6 cut(s) 137, 405, 503, 596, 767, 1059
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 1280
TseI GCWGC 4 cut(s) 29, 32, 59, 110
Tsp45I GTSAC 1 cut(s) 1280
TspDTI ATGAA 4 cut(s) 332, 915, 1034, 1460
TspGWI ACGGA 2 cut(s) 707, 1232
TspMI CCCGGG 1 cut(s) 1097
TspRI CASTG 1 cut(s) 445
Vha464I CTTAAG 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 527
VspI ATTAAT 1 cut(s) 767
XapI RAATTY 1 cut(s) 1238
XbaI TCTAGA 1 cut(s) 589
XceI RCATGY 2 cut(s) 253, 1394
XmaI CCCGGG 1 cut(s) 1097
XmiI GTMKAC 1 cut(s) 1036
XspI CTAG 7 cut(s) 161, 590, 681, 758, 1221, 1332, 1350
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.