ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 335 |
| AciI | CCGC | 2 cut(s) | 242, 248 |
| AclWI | GGATC | 1 cut(s) | 80 |
| AcoI | YGGCCR | 1 cut(s) | 489 |
| AcsI | RAATTY | 3 cut(s) | 163, 346, 518 |
| AcuI | CTGAAG | 1 cut(s) | 305 |
| AfaI | GTAC | 1 cut(s) | 385 |
| AflIII | ACRYGT | 1 cut(s) | 418 |
| AgeI | ACCGGT | 1 cut(s) | 510 |
| AgsI | TTSAA | 3 cut(s) | 211, 223, 517 |
| AjnI | CCWGG | 1 cut(s) | 188 |
| AluBI | AGCT | 3 cut(s) | 287, 434, 527 |
| AluI | AGCT | 3 cut(s) | 287, 434, 527 |
| Alw21I | GWGCWC | 1 cut(s) | 510 |
| Alw44I | GTGCAC | 1 cut(s) | 506 |
| AlwI | GGATC | 1 cut(s) | 80 |
| AoxI | GGCC | 2 cut(s) | 245, 489 |
| ApaLI | GTGCAC | 1 cut(s) | 506 |
| ApoI | RAATTY | 3 cut(s) | 163, 346, 518 |
| AsiGI | ACCGGT | 1 cut(s) | 510 |
| AspS9I | GGNCC | 1 cut(s) | 245 |
| AsuHPI | GGTGA | 1 cut(s) | 311 |
| AsuII | TTCGAA | 1 cut(s) | 522 |
| BaeGI | GKGCMC | 1 cut(s) | 510 |
| BalI | TGGCCA | 1 cut(s) | 491 |
| Bbv12I | GWGCWC | 1 cut(s) | 510 |
| BciT130I | CCWGG | 1 cut(s) | 190 |
| BfaI | CTAG | 3 cut(s) | 123, 431, 532 |
| BglII | AGATCT | 1 cut(s) | 370 |
| BisI | GCNGC | 1 cut(s) | 248 |
| BlsI | GCNGC | 1 cut(s) | 249 |
| Bme1390I | CCNGG | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 1 cut(s) | 245 |
| BmiI | GGNNCC | 1 cut(s) | 246 |
| BmrFI | CCNGG | 1 cut(s) | 190 |
| BmrI | ACTGGG | 1 cut(s) | 432 |
| BmsI | GCATC | 1 cut(s) | 258 |
| BmuI | ACTGGG | 1 cut(s) | 432 |
| Bpu14I | TTCGAA | 1 cut(s) | 522 |
| BsaAI | YACGTR | 1 cut(s) | 170 |
| BsaBI | GATNNNNATC | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 3 cut(s) | 188, 189, 486 |
| BsaWI | WCCGGW | 1 cut(s) | 510 |
| Bse118I | RCCGGY | 1 cut(s) | 510 |
| Bse1I | ACTGG | 1 cut(s) | 438 |
| Bse8I | GATNNNNATC | 1 cut(s) | 138 |
| BseBI | CCWGG | 1 cut(s) | 190 |
| BseDI | CCNNGG | 3 cut(s) | 188, 189, 486 |
| BseGI | GGATG | 1 cut(s) | 132 |
| BseJI | GATNNNNATC | 1 cut(s) | 138 |
| BseNI | ACTGG | 1 cut(s) | 438 |
| BseSI | GKGCMC | 1 cut(s) | 510 |
| BsgI | GTGCAG | 1 cut(s) | 30 |
| BshFI | GGCC | 2 cut(s) | 247, 491 |
| BshTI | ACCGGT | 1 cut(s) | 510 |
| BsiHKAI | GWGCWC | 1 cut(s) | 510 |
| BsiSI | CCGG | 1 cut(s) | 511 |
| BsnI | GGCC | 2 cut(s) | 247, 491 |
| Bsp119I | TTCGAA | 1 cut(s) | 522 |
| Bsp1286I | GDGCHC | 1 cut(s) | 510 |
| Bsp1407I | TGTACA | 1 cut(s) | 383 |
| Bsp143I | GATC | 4 cut(s) | 85, 139, 172, 370 |
| BspACI | CCGC | 2 cut(s) | 242, 248 |
| BspANI | GGCC | 2 cut(s) | 247, 491 |
| BspLI | GGNNCC | 1 cut(s) | 246 |
| BspPI | GGATC | 1 cut(s) | 80 |
| BspT104I | TTCGAA | 1 cut(s) | 522 |
| BsrFI | RCCGGY | 1 cut(s) | 510 |
| BsrGI | TGTACA | 1 cut(s) | 383 |
| BsrI | ACTGG | 1 cut(s) | 438 |
| BssAI | RCCGGY | 1 cut(s) | 510 |
| BssECI | CCNNGG | 3 cut(s) | 188, 189, 486 |
| BssMI | GATC | 4 cut(s) | 85, 139, 172, 370 |
| BssT1I | CCWWGG | 1 cut(s) | 486 |
| Bst2UI | CCWGG | 1 cut(s) | 190 |
| Bst4CI | ACNGT | 2 cut(s) | 31, 156 |
| BstAUI | TGTACA | 1 cut(s) | 383 |
| BstBAI | YACGTR | 1 cut(s) | 170 |
| BstBI | TTCGAA | 1 cut(s) | 522 |
| BstC8I | GCNNGC | 2 cut(s) | 414, 475 |
| BstDEI | CTNAG | 1 cut(s) | 290 |
| BstEII | GGTNACC | 1 cut(s) | 299 |
| BstF5I | GGATG | 1 cut(s) | 132 |
| BstKTI | GATC | 4 cut(s) | 88, 142, 175, 373 |
| BstMBI | GATC | 4 cut(s) | 85, 139, 172, 370 |
| BstNI | CCWGG | 1 cut(s) | 190 |
| BstNSI | RCATGY | 2 cut(s) | 416, 422 |
| BstPI | GGTNACC | 1 cut(s) | 299 |
| BstSCI | CCNGG | 1 cut(s) | 188 |
| BstSLI | GKGCMC | 1 cut(s) | 510 |
| BstX2I | RGATCY | 2 cut(s) | 85, 370 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 396 |
| BstYI | RGATCY | 2 cut(s) | 85, 370 |
| BsuRI | GGCC | 2 cut(s) | 247, 491 |
| BtsCI | GGATG | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 445 |
| Cac8I | GCNNGC | 2 cut(s) | 414, 475 |
| Cfr10I | RCCGGY | 1 cut(s) | 510 |
| Cfr13I | GGNCC | 1 cut(s) | 245 |
| CseI | GACGC | 1 cut(s) | 413 |
| Csp6I | GTAC | 1 cut(s) | 384 |
| CspAI | ACCGGT | 1 cut(s) | 510 |
| CviAII | CATG | 8 cut(s) | 90, 147, 272, 339, 390, 413, 419, 452 |
| CviJI | RGCY | 7 cut(s) | 247, 287, 319, 434, 473, 491, 527 |
| CviKI_1 | RGCY | 7 cut(s) | 247, 287, 319, 434, 473, 491, 527 |
| CviQI | GTAC | 1 cut(s) | 384 |
| DdeI | CTNAG | 1 cut(s) | 290 |
| DpnI | GATC | 4 cut(s) | 87, 141, 174, 372 |
| DpnII | GATC | 4 cut(s) | 85, 139, 172, 370 |
| EaeI | YGGCCR | 1 cut(s) | 489 |
| Eco130I | CCWWGG | 1 cut(s) | 486 |
| Eco32I | GATATC | 1 cut(s) | 403 |
| Eco57I | CTGAAG | 1 cut(s) | 305 |
| Eco91I | GGTNACC | 1 cut(s) | 299 |
| EcoO65I | GGTNACC | 1 cut(s) | 299 |
| EcoRI | GAATTC | 1 cut(s) | 346 |
| EcoRII | CCWGG | 1 cut(s) | 188 |
| EcoRV | GATATC | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 1 cut(s) | 486 |
| EcoT22I | ATGCAT | 1 cut(s) | 273 |
| ErhI | CCWWGG | 1 cut(s) | 486 |
| FaeI | CATG | 8 cut(s) | 93, 150, 275, 342, 393, 416, 422, 455 |
| FatI | CATG | 8 cut(s) | 89, 146, 271, 338, 389, 412, 418, 451 |
| FauI | CCCGC | 1 cut(s) | 235 |
| FblI | GTMKAC | 1 cut(s) | 335 |
| Fnu4HI | GCNGC | 1 cut(s) | 248 |
| FokI | GGATG | 1 cut(s) | 139 |
| Fsp4HI | GCNGC | 1 cut(s) | 248 |
| FspBI | CTAG | 3 cut(s) | 123, 431, 532 |
| GluI | GCNGC | 1 cut(s) | 248 |
| HaeIII | GGCC | 2 cut(s) | 247, 491 |
| HapII | CCGG | 1 cut(s) | 511 |
| HgaI | GACGC | 1 cut(s) | 413 |
| Hin1II | CATG | 8 cut(s) | 93, 150, 275, 342, 393, 416, 422, 455 |
| HincII | GTYRAC | 1 cut(s) | 102 |
| HindII | GTYRAC | 1 cut(s) | 102 |
| HindIII | AAGCTT | 1 cut(s) | 525 |
| HinfI | GANTC | 3 cut(s) | 108, 179, 443 |
| HpaI | GTTAAC | 1 cut(s) | 102 |
| HpaII | CCGG | 1 cut(s) | 511 |
| HphI | GGTGA | 1 cut(s) | 311 |
| Hpy166II | GTNNAC | 4 cut(s) | 102, 336, 386, 508 |
| Hpy188I | TCNGA | 5 cut(s) | 259, 267, 352, 448, 459 |
| Hpy188III | TCNNGA | 4 cut(s) | 7, 34, 176, 220 |
| Hpy8I | GTNNAC | 4 cut(s) | 102, 336, 386, 508 |
| HpyAV | CCTTC | 1 cut(s) | 314 |
| HpyCH4III | ACNGT | 2 cut(s) | 31, 156 |
| HpyCH4IV | ACGT | 2 cut(s) | 169, 262 |
| HpyCH4V | TGCA | 5 cut(s) | 47, 271, 377, 416, 508 |
| HpyF3I | CTNAG | 1 cut(s) | 290 |
| HpySE526I | ACGT | 2 cut(s) | 169, 262 |
| Hsp92II | CATG | 8 cut(s) | 93, 150, 275, 342, 393, 416, 422, 455 |
| KspAI | GTTAAC | 1 cut(s) | 102 |
| Kzo9I | GATC | 4 cut(s) | 85, 139, 172, 370 |
| LmnI | GCTCC | 1 cut(s) | 439 |
| LpnPI | CCDG | 6 cut(s) | 175, 202, 308, 451, 487, 524 |
| LweI | GCATC | 1 cut(s) | 258 |
| MaeI | CTAG | 3 cut(s) | 123, 431, 532 |
| MaeII | ACGT | 2 cut(s) | 169, 262 |
| MaeIII | GTNAC | 2 cut(s) | 156, 299 |
| MalI | GATC | 4 cut(s) | 87, 141, 174, 372 |
| MboI | GATC | 4 cut(s) | 85, 139, 172, 370 |
| MflI | RGATCY | 2 cut(s) | 85, 370 |
| MhlI | GDGCHC | 1 cut(s) | 510 |
| MlsI | TGGCCA | 1 cut(s) | 491 |
| MluCI | AATT | 4 cut(s) | 163, 310, 346, 518 |
| MluNI | TGGCCA | 1 cut(s) | 491 |
| MmeI | TCCRAC | 1 cut(s) | 74 |
| MnlI | CCTC | 2 cut(s) | 68, 90 |
| Mox20I | TGGCCA | 1 cut(s) | 491 |
| Mph1103I | ATGCAT | 1 cut(s) | 273 |
| MscI | TGGCCA | 1 cut(s) | 491 |
| MseI | TTAA | 2 cut(s) | 101, 309 |
| MslI | CAYNNNNRTG | 2 cut(s) | 394, 417 |
| Msp20I | TGGCCA | 1 cut(s) | 491 |
| MspI | CCGG | 1 cut(s) | 511 |
| MspR9I | CCNGG | 1 cut(s) | 190 |
| MvaI | CCWGG | 1 cut(s) | 190 |
| NdeII | GATC | 4 cut(s) | 85, 139, 172, 370 |
| NlaIII | CATG | 8 cut(s) | 93, 150, 275, 342, 393, 416, 422, 455 |
| NlaIV | GGNNCC | 1 cut(s) | 246 |
| NmuCI | GTSAC | 1 cut(s) | 299 |
| NsiI | ATGCAT | 1 cut(s) | 273 |
| NspI | RCATGY | 2 cut(s) | 416, 422 |
| NspV | TTCGAA | 1 cut(s) | 522 |
| PaeI | GCATGC | 1 cut(s) | 416 |
| PasI | CCCWGGG | 1 cut(s) | 189 |
| PciI | ACATGT | 1 cut(s) | 418 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 166, 259 |
| PfeI | GAWTC | 3 cut(s) | 108, 179, 443 |
| PinAI | ACCGGT | 1 cut(s) | 510 |
| PkrI | GCNGC | 1 cut(s) | 249 |
| Ppu21I | YACGTR | 1 cut(s) | 170 |
| PscI | ACATGT | 1 cut(s) | 418 |
| Psp6I | CCWGG | 1 cut(s) | 188 |
| PspEI | GGTNACC | 1 cut(s) | 299 |
| PspGI | CCWGG | 1 cut(s) | 188 |
| PspN4I | GGNNCC | 1 cut(s) | 246 |
| PspPI | GGNCC | 1 cut(s) | 245 |
| PsuI | RGATCY | 2 cut(s) | 85, 370 |
| RsaI | GTAC | 1 cut(s) | 385 |
| RsaNI | GTAC | 1 cut(s) | 384 |
| RseI | CAYNNNNRTG | 2 cut(s) | 394, 417 |
| SaqAI | TTAA | 2 cut(s) | 101, 309 |
| SatI | GCNGC | 1 cut(s) | 248 |
| Sau3AI | GATC | 4 cut(s) | 85, 139, 172, 370 |
| Sau96I | GGNCC | 1 cut(s) | 245 |
| ScrFI | CCNGG | 1 cut(s) | 190 |
| SduI | GDGCHC | 1 cut(s) | 510 |
| SetI | ASST | 8 cut(s) | 79, 101, 172, 265, 289, 306, 436, 529 |
| SfaNI | GCATC | 1 cut(s) | 258 |
| SfuI | TTCGAA | 1 cut(s) | 522 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 394, 417 |
| SphI | GCATGC | 1 cut(s) | 416 |
| Sse9I | AATT | 4 cut(s) | 163, 310, 346, 518 |
| SsiI | CCGC | 2 cut(s) | 242, 248 |
| SspMI | CTAG | 3 cut(s) | 123, 431, 532 |
| StyD4I | CCNGG | 1 cut(s) | 188 |
| StyI | CCWWGG | 1 cut(s) | 486 |
| TaaI | ACNGT | 2 cut(s) | 31, 156 |
| TaiI | ACGT | 2 cut(s) | 172, 265 |
| TaqI | TCGA | 2 cut(s) | 177, 522 |
| TasI | AATT | 4 cut(s) | 163, 310, 346, 518 |
| TatI | WGTACW | 1 cut(s) | 383 |
| TauI | GCSGC | 1 cut(s) | 250 |
| TfiI | GAWTC | 3 cut(s) | 108, 179, 443 |
| Tru1I | TTAA | 2 cut(s) | 101, 309 |
| Tru9I | TTAA | 2 cut(s) | 101, 309 |
| TscAI | CASTG | 1 cut(s) | 445 |
| TseFI | GTSAC | 1 cut(s) | 299 |
| Tsp45I | GTSAC | 1 cut(s) | 299 |
| TspDTI | ATGAA | 1 cut(s) | 228 |
| TspGWI | ACGGA | 1 cut(s) | 175 |
| TspRI | CASTG | 1 cut(s) | 445 |
| VneI | GTGCAC | 1 cut(s) | 506 |
| XapI | RAATTY | 3 cut(s) | 163, 346, 518 |
| XceI | RCATGY | 2 cut(s) | 416, 422 |
| XmiI | GTMKAC | 1 cut(s) | 335 |
| XspI | CTAG | 3 cut(s) | 123, 431, 532 |
| Zsp2I | ATGCAT | 1 cut(s) | 273 |