ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 565 |
| Acc36I | ACCTGC | 1 cut(s) | 565 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 474 |
| AccBSI | CCGCTC | 1 cut(s) | 541 |
| AccI | GTMKAC | 1 cut(s) | 152 |
| AccII | CGCG | 1 cut(s) | 499 |
| AciI | CCGC | 4 cut(s) | 44, 494, 539, 566 |
| AclWI | GGATC | 1 cut(s) | 514 |
| AcoI | YGGCCR | 1 cut(s) | 462 |
| AcsI | RAATTY | 1 cut(s) | 232 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 270, 271, 426, 460, 474 |
| AjiI | CACGTC | 1 cut(s) | 338 |
| AjnI | CCWGG | 3 cut(s) | 173, 473, 636 |
| AluBI | AGCT | 3 cut(s) | 22, 603, 612 |
| AluI | AGCT | 3 cut(s) | 22, 603, 612 |
| AlwI | GGATC | 1 cut(s) | 514 |
| AoxI | GGCC | 1 cut(s) | 462 |
| ApeKI | GCWGC | 4 cut(s) | 19, 352, 612, 622 |
| ApoI | RAATTY | 1 cut(s) | 232 |
| AspA2I | CCTAGG | 1 cut(s) | 569 |
| AspLEI | GCGC | 2 cut(s) | 499, 517 |
| AspS9I | GGNCC | 1 cut(s) | 451 |
| AsuHPI | GGTGA | 6 cut(s) | 217, 263, 289, 296, 409, 592 |
| AvaII | GGWCC | 1 cut(s) | 451 |
| AvrII | CCTAGG | 1 cut(s) | 569 |
| BalI | TGGCCA | 1 cut(s) | 464 |
| BbvI | GCAGC | 4 cut(s) | 31, 364, 599, 634 |
| BceAI | ACGGC | 2 cut(s) | 225, 507 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 341, 375 |
| BciT130I | CCWGG | 3 cut(s) | 175, 475, 638 |
| BfaI | CTAG | 3 cut(s) | 23, 395, 570 |
| BfmI | CTRYAG | 1 cut(s) | 17 |
| BfuAI | ACCTGC | 1 cut(s) | 565 |
| BisI | GCNGC | 5 cut(s) | 20, 353, 495, 613, 623 |
| BlnI | CCTAGG | 1 cut(s) | 569 |
| BlsI | GCNGC | 5 cut(s) | 21, 354, 496, 614, 624 |
| Bme1390I | CCNGG | 3 cut(s) | 175, 475, 638 |
| Bme18I | GGWCC | 1 cut(s) | 451 |
| BmgBI | CACGTC | 1 cut(s) | 338 |
| BmgT120I | GGNCC | 1 cut(s) | 451 |
| BmrFI | CCNGG | 3 cut(s) | 175, 475, 638 |
| BmsI | GCATC | 4 cut(s) | 317, 339, 514, 609 |
| BpmI | CTGGAG | 1 cut(s) | 196 |
| Bsa29I | ATCGAT | 1 cut(s) | 135 |
| BsaAI | YACGTR | 1 cut(s) | 228 |
| BsaJI | CCNNGG | 3 cut(s) | 269, 523, 569 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 134, 164, 315, 345, 394, 424 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 270, 271, 426, 460, 474 |
| Bse1I | ACTGG | 2 cut(s) | 409, 453 |
| BseBI | CCWGG | 3 cut(s) | 175, 475, 638 |
| BseCI | ATCGAT | 1 cut(s) | 135 |
| BseDI | CCNNGG | 3 cut(s) | 269, 523, 569 |
| BseGI | GGATG | 5 cut(s) | 106, 370, 441, 624, 646 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 270, 271, 426, 460, 474 |
| BseNI | ACTGG | 2 cut(s) | 409, 453 |
| BseRI | GAGGAG | 1 cut(s) | 269 |
| BseXI | GCAGC | 4 cut(s) | 31, 364, 599, 634 |
| BseYI | CCCAGC | 1 cut(s) | 430 |
| BsgI | GTGCAG | 1 cut(s) | 477 |
| Bsh1236I | CGCG | 1 cut(s) | 499 |
| BshFI | GGCC | 1 cut(s) | 464 |
| BshVI | ATCGAT | 1 cut(s) | 135 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 270, 271, 426, 460, 474 |
| BsmI | GAATGC | 1 cut(s) | 383 |
| BsnI | GGCC | 1 cut(s) | 464 |
| Bsp143I | GATC | 4 cut(s) | 279, 382, 391, 519 |
| Bsp19I | CCATGG | 1 cut(s) | 523 |
| BspACI | CCGC | 4 cut(s) | 44, 494, 539, 566 |
| BspANI | GGCC | 1 cut(s) | 464 |
| BspDI | ATCGAT | 1 cut(s) | 135 |
| BspFNI | CGCG | 1 cut(s) | 499 |
| BspMAI | CTGCAG | 1 cut(s) | 21 |
| BspMI | ACCTGC | 1 cut(s) | 565 |
| BspPI | GGATC | 1 cut(s) | 514 |
| BsrBI | CCGCTC | 1 cut(s) | 541 |
| BsrI | ACTGG | 2 cut(s) | 409, 453 |
| BssECI | CCNNGG | 3 cut(s) | 269, 523, 569 |
| BssMI | GATC | 4 cut(s) | 279, 382, 391, 519 |
| BssT1I | CCWWGG | 2 cut(s) | 523, 569 |
| Bst2UI | CCWGG | 3 cut(s) | 175, 475, 638 |
| Bst4CI | ACNGT | 4 cut(s) | 8, 161, 270, 455 |
| BstBAI | YACGTR | 1 cut(s) | 228 |
| BstDSI | CCRYGG | 2 cut(s) | 269, 523 |
| BstF5I | GGATG | 5 cut(s) | 106, 370, 441, 624, 646 |
| BstFNI | CGCG | 1 cut(s) | 499 |
| BstHHI | GCGC | 2 cut(s) | 499, 517 |
| BstKTI | GATC | 4 cut(s) | 282, 385, 394, 522 |
| BstMBI | GATC | 4 cut(s) | 279, 382, 391, 519 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 19, 609 |
| BstNI | CCWGG | 3 cut(s) | 175, 475, 638 |
| BstNSI | RCATGY | 1 cut(s) | 308 |
| BstSCI | CCNGG | 3 cut(s) | 173, 473, 636 |
| BstSFI | CTRYAG | 1 cut(s) | 17 |
| BstUI | CGCG | 1 cut(s) | 499 |
| BstV1I | GCAGC | 4 cut(s) | 31, 364, 599, 634 |
| BstX2I | RGATCY | 1 cut(s) | 519 |
| BstYI | RGATCY | 1 cut(s) | 519 |
| Bsu15I | ATCGAT | 1 cut(s) | 135 |
| BsuRI | GGCC | 1 cut(s) | 464 |
| BsuTUI | ATCGAT | 1 cut(s) | 135 |
| BtgI | CCRYGG | 2 cut(s) | 269, 523 |
| BtrI | CACGTC | 1 cut(s) | 338 |
| BtsCI | GGATG | 5 cut(s) | 106, 370, 441, 624, 646 |
| BtsI | GCAGTG | 1 cut(s) | 465 |
| BtsIMutI | CAGTG | 2 cut(s) | 402, 465 |
| BveI | ACCTGC | 1 cut(s) | 565 |
| CfoI | GCGC | 2 cut(s) | 499, 517 |
| Cfr13I | GGNCC | 1 cut(s) | 451 |
| ClaI | ATCGAT | 1 cut(s) | 135 |
| CseI | GACGC | 1 cut(s) | 614 |
| CsiI | ACCWGGT | 1 cut(s) | 473 |
| CviAII | CATG | 4 cut(s) | 289, 305, 524, 533 |
| CviJI | RGCY | 8 cut(s) | 22, 173, 212, 355, 430, 464, 603, 612 |
| CviKI_1 | RGCY | 8 cut(s) | 22, 173, 212, 355, 430, 464, 603, 612 |
| DpnI | GATC | 4 cut(s) | 281, 384, 393, 521 |
| DpnII | GATC | 4 cut(s) | 279, 382, 391, 519 |
| EaeI | YGGCCR | 1 cut(s) | 462 |
| EciI | GGCGGA | 1 cut(s) | 555 |
| Eco130I | CCWWGG | 2 cut(s) | 523, 569 |
| Eco47I | GGWCC | 1 cut(s) | 451 |
| EcoRII | CCWGG | 3 cut(s) | 173, 473, 636 |
| EcoT14I | CCWWGG | 2 cut(s) | 523, 569 |
| EcoT22I | ATGCAT | 1 cut(s) | 310 |
| ErhI | CCWWGG | 2 cut(s) | 523, 569 |
| FaeI | CATG | 4 cut(s) | 292, 308, 527, 536 |
| FaiI | YATR | 7 cut(s) | 80, 170, 195, 290, 306, 525, 534 |
| FatI | CATG | 4 cut(s) | 288, 304, 523, 532 |
| FblI | GTMKAC | 1 cut(s) | 152 |
| Fnu4HI | GCNGC | 5 cut(s) | 20, 353, 495, 613, 623 |
| FokI | GGATG | 5 cut(s) | 113, 377, 448, 631, 653 |
| Fsp4HI | GCNGC | 5 cut(s) | 20, 353, 495, 613, 623 |
| FspBI | CTAG | 3 cut(s) | 23, 395, 570 |
| GlaI | GCGC | 2 cut(s) | 498, 516 |
| GluI | GCNGC | 5 cut(s) | 20, 353, 495, 613, 623 |
| GsaI | CCCAGC | 1 cut(s) | 434 |
| GsuI | CTGGAG | 1 cut(s) | 196 |
| HaeIII | GGCC | 1 cut(s) | 464 |
| HgaI | GACGC | 1 cut(s) | 614 |
| HhaI | GCGC | 2 cut(s) | 499, 517 |
| Hin1II | CATG | 4 cut(s) | 292, 308, 527, 536 |
| Hin6I | GCGC | 2 cut(s) | 497, 515 |
| HinP1I | GCGC | 2 cut(s) | 497, 515 |
| HincII | GTYRAC | 1 cut(s) | 372 |
| HindII | GTYRAC | 1 cut(s) | 372 |
| HinfI | GANTC | 1 cut(s) | 257 |
| HphI | GGTGA | 6 cut(s) | 217, 263, 289, 296, 409, 592 |
| Hpy166II | GTNNAC | 3 cut(s) | 153, 372, 402 |
| Hpy188I | TCNGA | 3 cut(s) | 313, 387, 481 |
| Hpy188III | TCNNGA | 2 cut(s) | 362, 629 |
| Hpy8I | GTNNAC | 3 cut(s) | 153, 372, 402 |
| Hpy99I | CGWCG | 1 cut(s) | 339 |
| HpyAV | CCTTC | 1 cut(s) | 310 |
| HpyCH4III | ACNGT | 4 cut(s) | 8, 161, 270, 455 |
| HpyCH4IV | ACGT | 2 cut(s) | 227, 337 |
| HpyCH4V | TGCA | 7 cut(s) | 19, 308, 352, 458, 505, 622, 649 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 19, 609 |
| HpySE526I | ACGT | 2 cut(s) | 227, 337 |
| Hsp92II | CATG | 4 cut(s) | 292, 308, 527, 536 |
| HspAI | GCGC | 2 cut(s) | 497, 515 |
| Kzo9I | GATC | 4 cut(s) | 279, 382, 391, 519 |
| Lsp1109I | GCAGC | 4 cut(s) | 31, 364, 599, 634 |
| LweI | GCATC | 4 cut(s) | 317, 339, 514, 609 |
| MabI | ACCWGGT | 1 cut(s) | 473 |
| MaeI | CTAG | 3 cut(s) | 23, 395, 570 |
| MaeII | ACGT | 2 cut(s) | 227, 337 |
| MaeIII | GTNAC | 2 cut(s) | 205, 284 |
| MalI | GATC | 4 cut(s) | 281, 384, 393, 521 |
| MbiI | CCGCTC | 1 cut(s) | 541 |
| MboI | GATC | 4 cut(s) | 279, 382, 391, 519 |
| MboII | GAAGA | 2 cut(s) | 101, 478 |
| MfeI | CAATTG | 1 cut(s) | 34 |
| MflI | RGATCY | 1 cut(s) | 519 |
| MlsI | TGGCCA | 1 cut(s) | 464 |
| MluCI | AATT | 3 cut(s) | 34, 232, 296 |
| MluNI | TGGCCA | 1 cut(s) | 464 |
| MlyI | GAGTC | 1 cut(s) | 266 |
| MnlI | CCTC | 6 cut(s) | 49, 247, 313, 317, 576, 646 |
| Mox20I | TGGCCA | 1 cut(s) | 464 |
| Mph1103I | ATGCAT | 1 cut(s) | 310 |
| MscI | TGGCCA | 1 cut(s) | 464 |
| MslI | CAYNNNNRTG | 2 cut(s) | 135, 137 |
| Msp20I | TGGCCA | 1 cut(s) | 464 |
| MspR9I | CCNGG | 3 cut(s) | 175, 475, 638 |
| MunI | CAATTG | 1 cut(s) | 34 |
| Mva1269I | GAATGC | 1 cut(s) | 383 |
| MvaI | CCWGG | 3 cut(s) | 175, 475, 638 |
| MvnI | CGCG | 1 cut(s) | 499 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 19, 609 |
| NcoI | CCATGG | 1 cut(s) | 523 |
| NdeII | GATC | 4 cut(s) | 279, 382, 391, 519 |
| NlaIII | CATG | 4 cut(s) | 292, 308, 527, 536 |
| NmuCI | GTSAC | 2 cut(s) | 205, 284 |
| NsiI | ATGCAT | 1 cut(s) | 310 |
| NspI | RCATGY | 1 cut(s) | 308 |
| PaqCI | CACCTGC | 1 cut(s) | 565 |
| PctI | GAATGC | 1 cut(s) | 383 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 474 |
| PkrI | GCNGC | 5 cut(s) | 21, 354, 496, 614, 624 |
| PleI | GAGTC | 1 cut(s) | 265 |
| PpsI | GAGTC | 1 cut(s) | 265 |
| Ppu21I | YACGTR | 1 cut(s) | 228 |
| Psp6I | CCWGG | 3 cut(s) | 173, 473, 636 |
| PspFI | CCCAGC | 1 cut(s) | 430 |
| PspGI | CCWGG | 3 cut(s) | 173, 473, 636 |
| PspPI | GGNCC | 1 cut(s) | 451 |
| PstI | CTGCAG | 1 cut(s) | 21 |
| PsuI | RGATCY | 1 cut(s) | 519 |
| RseI | CAYNNNNRTG | 2 cut(s) | 135, 137 |
| SatI | GCNGC | 5 cut(s) | 20, 353, 495, 613, 623 |
| Sau3AI | GATC | 4 cut(s) | 279, 382, 391, 519 |
| Sau96I | GGNCC | 1 cut(s) | 451 |
| SchI | GAGTC | 1 cut(s) | 266 |
| ScrFI | CCNGG | 3 cut(s) | 175, 475, 638 |
| SetI | ASST | 9 cut(s) | 24, 152, 230, 340, 422, 476, 579, 605, 614 |
| SexAI | ACCWGGT | 1 cut(s) | 473 |
| SfaNI | GCATC | 4 cut(s) | 317, 339, 514, 609 |
| SfcI | CTRYAG | 1 cut(s) | 17 |
| SinI | GGWCC | 1 cut(s) | 451 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 135, 137 |
| Sse9I | AATT | 3 cut(s) | 34, 232, 296 |
| SsiI | CCGC | 4 cut(s) | 44, 494, 539, 566 |
| SspMI | CTAG | 3 cut(s) | 23, 395, 570 |
| StyD4I | CCNGG | 3 cut(s) | 173, 473, 636 |
| StyI | CCWWGG | 2 cut(s) | 523, 569 |
| TaaI | ACNGT | 4 cut(s) | 8, 161, 270, 455 |
| TaiI | ACGT | 2 cut(s) | 230, 340 |
| TaqI | TCGA | 2 cut(s) | 116, 135 |
| TasI | AATT | 3 cut(s) | 34, 232, 296 |
| TauI | GCSGC | 1 cut(s) | 497 |
| TscAI | CASTG | 2 cut(s) | 409, 465 |
| TseFI | GTSAC | 2 cut(s) | 205, 284 |
| TseI | GCWGC | 4 cut(s) | 19, 352, 612, 622 |
| Tsp45I | GTSAC | 2 cut(s) | 205, 284 |
| TspDTI | ATGAA | 3 cut(s) | 17, 305, 309 |
| TspRI | CASTG | 2 cut(s) | 409, 465 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 474 |
| VpaK11BI | GGWCC | 1 cut(s) | 451 |
| XapI | RAATTY | 1 cut(s) | 232 |
| XceI | RCATGY | 1 cut(s) | 308 |
| XmaJI | CCTAGG | 1 cut(s) | 569 |
| XmiI | GTMKAC | 1 cut(s) | 152 |
| XspI | CTAG | 3 cut(s) | 23, 395, 570 |
| Zsp2I | ATGCAT | 1 cut(s) | 310 |