ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1676, 2283 |
| Acc36I | ACCTGC | 3 cut(s) | 180, 1676, 2283 |
| AccB1I | GGYRCC | 1 cut(s) | 952 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1861 |
| AccI | GTMKAC | 1 cut(s) | 1637 |
| AccII | CGCG | 8 cut(s) | 31, 263, 303, 440, 464, 478, 518, 4851 |
| AclWI | GGATC | 9 cut(s) | 617, 1941, 3393, 3406, 3699, 4094, 4107, 4763, 4776 |
| AcoI | YGGCCR | 5 cut(s) | 549, 688, 851, 1694, 3572 |
| AcuI | CTGAAG | 3 cut(s) | 2532, 2822, 4284 |
| AcvI | CACGTG | 2 cut(s) | 694, 4093 |
| AcyI | GRCGYC | 4 cut(s) | 81, 129, 416, 881 |
| AdeI | CACNNNGTG | 1 cut(s) | 402 |
| AfaI | GTAC | 4 cut(s) | 3013, 3816, 3970, 4780 |
| AflII | CTTAAG | 2 cut(s) | 1160, 3359 |
| AflIII | ACRYGT | 2 cut(s) | 4651, 4685 |
| AgeI | ACCGGT | 1 cut(s) | 4296 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 133, 1660 |
| AjiI | CACGTC | 1 cut(s) | 750 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2384, 2416, 4562, 4594 |
| AleI | CACNNNNGTG | 2 cut(s) | 1876, 3611 |
| Alw21I | GWGCWC | 6 cut(s) | 495, 708, 3033, 3502, 4395, 4504 |
| Alw26I | GTCTC | 7 cut(s) | 72, 1432, 2656, 2767, 2935, 3208, 3748 |
| Alw44I | GTGCAC | 2 cut(s) | 3498, 4391 |
| AlwI | GGATC | 9 cut(s) | 617, 1941, 3393, 3406, 3699, 4094, 4107, 4763, 4776 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 664, 1936, 3098 |
| ApaLI | GTGCAC | 2 cut(s) | 3498, 4391 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1337, 1369, 1463, 1495 |
| AseI | ATTAAT | 1 cut(s) | 3492 |
| AsiGI | ACCGGT | 1 cut(s) | 4296 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1737 |
| AspS9I | GGNCC | 5 cut(s) | 94, 817, 1580, 2171, 3479 |
| AsuC2I | CCSGG | 1 cut(s) | 2590 |
| AvaII | GGWCC | 3 cut(s) | 817, 1580, 3479 |
| BaeGI | GKGCMC | 4 cut(s) | 398, 2821, 3502, 4395 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3003, 3036 |
| BalI | TGGCCA | 1 cut(s) | 690 |
| BamHI | GGATCC | 3 cut(s) | 3398, 4099, 4768 |
| BanI | GGYRCC | 1 cut(s) | 952 |
| BanII | GRGCYC | 3 cut(s) | 495, 601, 708 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2310, 2342 |
| BauI | CACGAG | 2 cut(s) | 353, 4308 |
| BbrPI | CACGTG | 2 cut(s) | 694, 4093 |
| BbsI | GAAGAC | 2 cut(s) | 3398, 4283 |
| Bbv12I | GWGCWC | 6 cut(s) | 495, 708, 3033, 3502, 4395, 4504 |
| BbvCI | CCTCAGC | 1 cut(s) | 323 |
| BceAI | ACGGC | 8 cut(s) | 68, 193, 306, 574, 687, 3349, 3587, 3797 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4413, 4447 |
| BciVI | GTATCC | 1 cut(s) | 4227 |
| BclI | TGATCA | 1 cut(s) | 3337 |
| BcnI | CCSGG | 1 cut(s) | 2590 |
| BcoDI | GTCTC | 7 cut(s) | 72, 1432, 2656, 2767, 2935, 3208, 3748 |
| BfaI | CTAG | 9 cut(s) | 176, 846, 1584, 1682, 2178, 3153, 3413, 3827, 4972 |
| BfmI | CTRYAG | 5 cut(s) | 1638, 1826, 2276, 4155, 4837 |
| BfoI | RGCGCY | 3 cut(s) | 287, 296, 323 |
| BfrI | CTTAAG | 2 cut(s) | 1160, 3359 |
| BfuAI | ACCTGC | 3 cut(s) | 180, 1676, 2283 |
| BfuI | GTATCC | 1 cut(s) | 4227 |
| BglII | AGATCT | 1 cut(s) | 2341 |
| BlpI | GCTNAGC | 3 cut(s) | 2690, 3234, 3252 |
| Bme18I | GGWCC | 3 cut(s) | 817, 1580, 3479 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 133, 1660 |
| BmgBI | CACGTC | 1 cut(s) | 750 |
| BmgT120I | GGNCC | 5 cut(s) | 94, 817, 1580, 2171, 3479 |
| BmiI | GGNNCC | 8 cut(s) | 308, 819, 954, 3324, 3400, 3791, 4101, 4770 |
| BmrI | ACTGGG | 4 cut(s) | 1264, 2133, 2736, 3981 |
| BmuI | ACTGGG | 4 cut(s) | 1264, 2133, 2736, 3981 |
| BpiI | GAAGAC | 2 cut(s) | 3398, 4283 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1481, 1513, 3047, 3079 |
| BpmI | CTGGAG | 4 cut(s) | 2231, 3051, 3075, 3432 |
| Bpu10I | CCTNAGC | 5 cut(s) | 182, 323, 707, 1907, 2414 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 2690, 3234, 3252 |
| BpuEI | CTTGAG | 4 cut(s) | 2456, 3191, 3563, 4162 |
| BpuMI | CCSGG | 1 cut(s) | 2590 |
| Bsa29I | ATCGAT | 2 cut(s) | 1109, 2700 |
| BsaAI | YACGTR | 3 cut(s) | 694, 4093, 4686 |
| BsaBI | GATNNNNATC | 3 cut(s) | 3552, 4075, 4742 |
| BsaHI | GRCGYC | 4 cut(s) | 81, 129, 416, 881 |
| BsaWI | WCCGGW | 2 cut(s) | 1007, 4296 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 69, 99, 818, 848 |
| Bse118I | RCCGGY | 3 cut(s) | 46, 616, 4296 |
| Bse3DI | GCAATG | 2 cut(s) | 973, 4825 |
| Bse8I | GATNNNNATC | 3 cut(s) | 3552, 4075, 4742 |
| BseCI | ATCGAT | 2 cut(s) | 1109, 2700 |
| BseJI | GATNNNNATC | 3 cut(s) | 3552, 4075, 4742 |
| BseMI | GCAATG | 2 cut(s) | 973, 4825 |
| BseRI | GAGGAG | 4 cut(s) | 662, 907, 2843, 3613 |
| BseSI | GKGCMC | 4 cut(s) | 398, 2821, 3502, 4395 |
| BseX3I | CGGCCG | 1 cut(s) | 851 |
| BseYI | CCCAGC | 3 cut(s) | 96, 2096, 4857 |
| BsgI | GTGCAG | 3 cut(s) | 716, 3392, 4420 |
| Bsh1236I | CGCG | 8 cut(s) | 31, 263, 303, 440, 464, 478, 518, 4851 |
| Bsh1285I | CGRYCG | 3 cut(s) | 216, 510, 854 |
| BshNI | GGYRCC | 1 cut(s) | 952 |
| BshTI | ACCGGT | 1 cut(s) | 4296 |
| BshVI | ATCGAT | 2 cut(s) | 1109, 2700 |
| BsiEI | CGRYCG | 3 cut(s) | 216, 510, 854 |
| BsiHKAI | GWGCWC | 6 cut(s) | 495, 708, 3033, 3502, 4395, 4504 |
| BsiSI | CCGG | 7 cut(s) | 47, 298, 617, 884, 1008, 2589, 4297 |
| BsiWI | CGTACG | 1 cut(s) | 3814 |
| BslFI | GGGAC | 2 cut(s) | 1924, 3399 |
| BsmAI | GTCTC | 7 cut(s) | 72, 1432, 2656, 2767, 2935, 3208, 3748 |
| BsmBI | CGTCTC | 2 cut(s) | 72, 2767 |
| BsmFI | GGGAC | 2 cut(s) | 1924, 3399 |
| BsmI | GAATGC | 4 cut(s) | 278, 1449, 3058, 4859 |
| Bsp1286I | GDGCHC | 9 cut(s) | 398, 495, 601, 708, 2821, 3033, 3502, 4395, 4504 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 2690, 3234, 3252 |
| Bsp19I | CCATGG | 1 cut(s) | 1855 |
| BspDI | ATCGAT | 2 cut(s) | 1109, 2700 |
| BspFNI | CGCG | 8 cut(s) | 31, 263, 303, 440, 464, 478, 518, 4851 |
| BspHI | TCATGA | 2 cut(s) | 3040, 4843 |
| BspLI | GGNNCC | 8 cut(s) | 308, 819, 954, 3324, 3400, 3791, 4101, 4770 |
| BspMAI | CTGCAG | 1 cut(s) | 2280 |
| BspMI | ACCTGC | 3 cut(s) | 180, 1676, 2283 |
| BspPI | GGATC | 9 cut(s) | 617, 1941, 3393, 3406, 3699, 4094, 4107, 4763, 4776 |
| BspQI | GCTCTTC | 1 cut(s) | 2424 |
| BspT107I | GGYRCC | 1 cut(s) | 952 |
| BspTI | CTTAAG | 2 cut(s) | 1160, 3359 |
| BsrDI | GCAATG | 2 cut(s) | 973, 4825 |
| BsrFI | RCCGGY | 3 cut(s) | 46, 616, 4296 |
| BssAI | RCCGGY | 3 cut(s) | 46, 616, 4296 |
| BssNI | GRCGYC | 4 cut(s) | 81, 129, 416, 881 |
| BssSI | CACGAG | 2 cut(s) | 353, 4308 |
| BssT1I | CCWWGG | 3 cut(s) | 1182, 1855, 2613 |
| Bst2BI | CACGAG | 2 cut(s) | 353, 4308 |
| Bst6I | CTCTTC | 9 cut(s) | 771, 882, 974, 2211, 2414, 2424, 3138, 3171, 4162 |
| BstACI | GRCGYC | 4 cut(s) | 81, 129, 416, 881 |
| BstAFI | CTTAAG | 2 cut(s) | 1160, 3359 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 402, 664, 2894 |
| BstBAI | YACGTR | 3 cut(s) | 694, 4093, 4686 |
| BstC8I | GCNNGC | 9 cut(s) | 48, 253, 347, 483, 641, 656, 2170, 2835, 3422 |
| BstDSI | CCRYGG | 3 cut(s) | 1855, 2379, 4759 |
| BstEII | GGTNACC | 1 cut(s) | 3083 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 3531, 3806 |
| BstFNI | CGCG | 8 cut(s) | 31, 263, 303, 440, 464, 478, 518, 4851 |
| BstH2I | RGCGCY | 3 cut(s) | 287, 296, 323 |
| BstMAI | GTCTC | 7 cut(s) | 72, 1432, 2656, 2767, 2935, 3208, 3748 |
| BstMCI | CGRYCG | 3 cut(s) | 216, 510, 854 |
| BstNSI | RCATGY | 4 cut(s) | 3037, 3767, 4088, 4655 |
| BstPI | GGTNACC | 1 cut(s) | 3083 |
| BstSFI | CTRYAG | 5 cut(s) | 1638, 1826, 2276, 4155, 4837 |
| BstSLI | GKGCMC | 4 cut(s) | 398, 2821, 3502, 4395 |
| BstUI | CGCG | 8 cut(s) | 31, 263, 303, 440, 464, 478, 518, 4851 |
| BstV2I | GAAGAC | 2 cut(s) | 3398, 4283 |
| BstX2I | RGATCY | 5 cut(s) | 1933, 2341, 3398, 4099, 4768 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1949 |
| BstYI | RGATCY | 5 cut(s) | 1933, 2341, 3398, 4099, 4768 |
| BstZI | CGGCCG | 1 cut(s) | 851 |
| Bsu15I | ATCGAT | 2 cut(s) | 1109, 2700 |
| BsuI | GTATCC | 1 cut(s) | 4227 |
| BsuTUI | ATCGAT | 2 cut(s) | 1109, 2700 |
| BtgI | CCRYGG | 3 cut(s) | 1855, 2379, 4759 |
| BtgZI | GCGATG | 1 cut(s) | 620 |
| BtrI | CACGTC | 1 cut(s) | 750 |
| BtsI | GCAGTG | 2 cut(s) | 1279, 1987 |
| BveI | ACCTGC | 3 cut(s) | 180, 1676, 2283 |
| Cac8I | GCNNGC | 9 cut(s) | 48, 253, 347, 483, 641, 656, 2170, 2835, 3422 |
| CaiI | CAGNNNCTG | 3 cut(s) | 664, 1936, 3098 |
| CciI | TCATGA | 2 cut(s) | 3040, 4843 |
| Cfr10I | RCCGGY | 3 cut(s) | 46, 616, 4296 |
| Cfr13I | GGNCC | 5 cut(s) | 94, 817, 1580, 2171, 3479 |
| ClaI | ATCGAT | 2 cut(s) | 1109, 2700 |
| CseI | GACGC | 5 cut(s) | 89, 137, 394, 405, 889 |
| Csp6I | GTAC | 4 cut(s) | 3012, 3815, 3969, 4779 |
| CspAI | ACCGGT | 1 cut(s) | 4296 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3827, 3862 |
| CviQI | GTAC | 4 cut(s) | 3012, 3815, 3969, 4779 |
| DraI | TTTAAA | 2 cut(s) | 2310, 4554 |
| DraIII | CACNNNGTG | 1 cut(s) | 402 |
| DriI | GACNNNNNGTC | 2 cut(s) | 133, 1660 |
| EaeI | YGGCCR | 5 cut(s) | 549, 688, 851, 1694, 3572 |
| EagI | CGGCCG | 1 cut(s) | 851 |
| Eam1104I | CTCTTC | 9 cut(s) | 771, 882, 974, 2211, 2414, 2424, 3138, 3171, 4162 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 133, 1660 |
| EarI | CTCTTC | 9 cut(s) | 771, 882, 974, 2211, 2414, 2424, 3138, 3171, 4162 |
| EciI | GGCGGA | 5 cut(s) | 90, 482, 599, 689, 2755 |
| Ecl136II | GAGCTC | 2 cut(s) | 493, 706 |
| EclXI | CGGCCG | 1 cut(s) | 851 |
| Eco130I | CCWWGG | 3 cut(s) | 1182, 1855, 2613 |
| Eco24I | GRGCYC | 3 cut(s) | 495, 601, 708 |
| Eco32I | GATATC | 1 cut(s) | 4744 |
| Eco47I | GGWCC | 3 cut(s) | 817, 1580, 3479 |
| Eco52I | CGGCCG | 1 cut(s) | 851 |
| Eco53kI | GAGCTC | 2 cut(s) | 493, 706 |
| Eco57I | CTGAAG | 3 cut(s) | 2532, 2822, 4284 |
| Eco72I | CACGTG | 2 cut(s) | 694, 4093 |
| Eco91I | GGTNACC | 1 cut(s) | 3083 |
| EcoICRI | GAGCTC | 2 cut(s) | 493, 706 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 3531, 3806 |
| EcoO109I | RGGNCCY | 1 cut(s) | 817 |
| EcoO65I | GGTNACC | 1 cut(s) | 3083 |
| EcoRI | GAATTC | 3 cut(s) | 358, 1737, 3537 |
| EcoRV | GATATC | 1 cut(s) | 4744 |
| EcoT14I | CCWWGG | 3 cut(s) | 1182, 1855, 2613 |
| EcoT22I | ATGCAT | 3 cut(s) | 2056, 3039, 3351 |
| EcoT38I | GRGCYC | 3 cut(s) | 495, 601, 708 |
| ErhI | CCWWGG | 3 cut(s) | 1182, 1855, 2613 |
| Esp3I | CGTCTC | 2 cut(s) | 72, 2767 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1122, 1154, 2418, 2450, 2736, 2768 |
| FaqI | GGGAC | 2 cut(s) | 1924, 3399 |
| FauI | CCCGC | 2 cut(s) | 296, 474 |
| FauNDI | CATATG | 1 cut(s) | 1326 |
| FbaI | TGATCA | 1 cut(s) | 3337 |
| FblI | GTMKAC | 1 cut(s) | 1637 |
| FriOI | GRGCYC | 3 cut(s) | 495, 601, 708 |
| FspBI | CTAG | 9 cut(s) | 176, 846, 1584, 1682, 2178, 3153, 3413, 3827, 4972 |
| GsaI | CCCAGC | 3 cut(s) | 100, 2100, 4861 |
| GsuI | CTGGAG | 4 cut(s) | 2231, 3051, 3075, 3432 |
| HaeII | RGCGCY | 3 cut(s) | 287, 296, 323 |
| HapII | CCGG | 7 cut(s) | 47, 298, 617, 884, 1008, 2589, 4297 |
| HgaI | GACGC | 5 cut(s) | 89, 137, 394, 405, 889 |
| Hin1I | GRCGYC | 4 cut(s) | 81, 129, 416, 881 |
| HincII | GTYRAC | 3 cut(s) | 1375, 2193, 3316 |
| HindII | GTYRAC | 3 cut(s) | 1375, 2193, 3316 |
| HindIII | AAGCTT | 5 cut(s) | 1724, 2398, 2750, 3188, 3462 |
| HpaI | GTTAAC | 1 cut(s) | 3316 |
| HpaII | CCGG | 7 cut(s) | 47, 298, 617, 884, 1008, 2589, 4297 |
| HpyCH4IV | ACGT | 7 cut(s) | 693, 749, 1629, 1717, 4092, 4187, 4685 |
| HpySE526I | ACGT | 7 cut(s) | 693, 749, 1629, 1717, 4092, 4187, 4685 |
| Hsp92I | GRCGYC | 4 cut(s) | 81, 129, 416, 881 |
| KroI | GCCGGC | 1 cut(s) | 46 |
| KroNI | GCCGGC | 1 cut(s) | 48 |
| Ksp22I | TGATCA | 1 cut(s) | 3337 |
| KspAI | GTTAAC | 1 cut(s) | 3316 |
| LguI | GCTCTTC | 1 cut(s) | 2424 |
| MaeI | CTAG | 9 cut(s) | 176, 846, 1584, 1682, 2178, 3153, 3413, 3827, 4972 |
| MaeII | ACGT | 7 cut(s) | 693, 749, 1629, 1717, 4092, 4187, 4685 |
| MaeIII | GTNAC | 9 cut(s) | 808, 983, 1134, 1607, 2560, 2576, 2722, 3083, 4226 |
| MfeI | CAATTG | 2 cut(s) | 1815, 2738 |
| MflI | RGATCY | 5 cut(s) | 1933, 2341, 3398, 4099, 4768 |
| MhlI | GDGCHC | 9 cut(s) | 398, 495, 601, 708, 2821, 3033, 3502, 4395, 4504 |
| MlsI | TGGCCA | 1 cut(s) | 690 |
| MluNI | TGGCCA | 1 cut(s) | 690 |
| MmeI | TCCRAC | 2 cut(s) | 1226, 2841 |
| Mox20I | TGGCCA | 1 cut(s) | 690 |
| Mph1103I | ATGCAT | 3 cut(s) | 2056, 3039, 3351 |
| MreI | CGCCGGCG | 1 cut(s) | 46 |
| MroNI | GCCGGC | 1 cut(s) | 46 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1737 |
| MscI | TGGCCA | 1 cut(s) | 690 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1876, 1947, 3042, 3611 |
| Msp20I | TGGCCA | 1 cut(s) | 690 |
| MspA1I | CMGCKG | 5 cut(s) | 349, 448, 715, 1420, 2046 |
| MspCI | CTTAAG | 2 cut(s) | 1160, 3359 |
| MspI | CCGG | 7 cut(s) | 47, 298, 617, 884, 1008, 2589, 4297 |
| MunI | CAATTG | 2 cut(s) | 1815, 2738 |
| Mva1269I | GAATGC | 4 cut(s) | 278, 1449, 3058, 4859 |
| MvnI | CGCG | 8 cut(s) | 31, 263, 303, 440, 464, 478, 518, 4851 |
| NaeI | GCCGGC | 1 cut(s) | 48 |
| NciI | CCSGG | 1 cut(s) | 2590 |
| NcoI | CCATGG | 1 cut(s) | 1855 |
| NdeI | CATATG | 1 cut(s) | 1326 |
| NgoMIV | GCCGGC | 1 cut(s) | 46 |
| NlaIV | GGNNCC | 8 cut(s) | 308, 819, 954, 3324, 3400, 3791, 4101, 4770 |
| NmeAIII | GCCGAG | 2 cut(s) | 157, 350 |
| NmuCI | GTSAC | 5 cut(s) | 808, 983, 2560, 2576, 3083 |
| NsiI | ATGCAT | 3 cut(s) | 2056, 3039, 3351 |
| NspI | RCATGY | 4 cut(s) | 3037, 3767, 4088, 4655 |
| OliI | CACNNNNGTG | 2 cut(s) | 1876, 3611 |
| PagI | TCATGA | 2 cut(s) | 3040, 4843 |
| PaqCI | CACCTGC | 2 cut(s) | 1676, 2283 |
| PciI | ACATGT | 1 cut(s) | 4651 |
| PciSI | GCTCTTC | 1 cut(s) | 2424 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 129, 503, 2713 |
| PctI | GAATGC | 4 cut(s) | 278, 1449, 3058, 4859 |
| PdiI | GCCGGC | 1 cut(s) | 48 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1737 |
| Pfl23II | CGTACG | 1 cut(s) | 3814 |
| PflFI | GACNNNGTC | 1 cut(s) | 83 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1861 |
| PfoI | TCCNGGA | 3 cut(s) | 2156, 2198, 4236 |
| PinAI | ACCGGT | 1 cut(s) | 4296 |
| Ple19I | CGATCG | 2 cut(s) | 216, 510 |
| PmaCI | CACGTG | 2 cut(s) | 694, 4093 |
| PmlI | CACGTG | 2 cut(s) | 694, 4093 |
| Ppu21I | YACGTR | 3 cut(s) | 694, 4093, 4686 |
| PpuMI | RGGWCCY | 1 cut(s) | 817 |
| PscI | ACATGT | 1 cut(s) | 4651 |
| PshBI | ATTAAT | 1 cut(s) | 3492 |
| Psp124BI | GAGCTC | 2 cut(s) | 495, 708 |
| Psp5II | RGGWCCY | 1 cut(s) | 817 |
| PspCI | CACGTG | 2 cut(s) | 694, 4093 |
| PspEI | GGTNACC | 1 cut(s) | 3083 |
| PspFI | CCCAGC | 3 cut(s) | 96, 2096, 4857 |
| PspLI | CGTACG | 1 cut(s) | 3814 |
| PspN4I | GGNNCC | 8 cut(s) | 308, 819, 954, 3324, 3400, 3791, 4101, 4770 |
| PspPI | GGNCC | 5 cut(s) | 94, 817, 1580, 2171, 3479 |
| PspPPI | RGGWCCY | 1 cut(s) | 817 |
| PstI | CTGCAG | 1 cut(s) | 2280 |
| PstNI | CAGNNNCTG | 3 cut(s) | 664, 1936, 3098 |
| PsuI | RGATCY | 5 cut(s) | 1933, 2341, 3398, 4099, 4768 |
| PsyI | GACNNNGTC | 1 cut(s) | 83 |
| PvuI | CGATCG | 2 cut(s) | 216, 510 |
| PvuII | CAGCTG | 1 cut(s) | 715 |
| RsaI | GTAC | 4 cut(s) | 3013, 3816, 3970, 4780 |
| RsaNI | GTAC | 4 cut(s) | 3012, 3815, 3969, 4779 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1876, 1947, 3042, 3611 |
| SacI | GAGCTC | 2 cut(s) | 495, 708 |
| SapI | GCTCTTC | 1 cut(s) | 2424 |
| Sau96I | GGNCC | 5 cut(s) | 94, 817, 1580, 2171, 3479 |
| SduI | GDGCHC | 9 cut(s) | 398, 495, 601, 708, 2821, 3033, 3502, 4395, 4504 |
| SfcI | CTRYAG | 5 cut(s) | 1638, 1826, 2276, 4155, 4837 |
| SgrAI | CRCCGGYG | 1 cut(s) | 46 |
| SinI | GGWCC | 3 cut(s) | 817, 1580, 3479 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1876, 1947, 3042, 3611 |
| SmlI | CTYRAG | 6 cut(s) | 1160, 2435, 3170, 3359, 3542, 4141 |
| SmoI | CTYRAG | 6 cut(s) | 1160, 2435, 3170, 3359, 3542, 4141 |
| SspI | AATATT | 3 cut(s) | 733, 3658, 4131 |
| SspMI | CTAG | 9 cut(s) | 176, 846, 1584, 1682, 2178, 3153, 3413, 3827, 4972 |
| SstI | GAGCTC | 2 cut(s) | 495, 708 |
| StyI | CCWWGG | 3 cut(s) | 1182, 1855, 2613 |
| TaiI | ACGT | 7 cut(s) | 696, 752, 1632, 1720, 4095, 4190, 4688 |
| TaqII | GACCGA | 1 cut(s) | 2769 |
| TatI | WGTACW | 1 cut(s) | 4778 |
| TseFI | GTSAC | 5 cut(s) | 808, 983, 2560, 2576, 3083 |
| Tsp45I | GTSAC | 5 cut(s) | 808, 983, 2560, 2576, 3083 |
| TspGWI | ACGGA | 4 cut(s) | 2396, 2722, 3172, 3636 |
| Tth111I | GACNNNGTC | 1 cut(s) | 83 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1861 |
| Vha464I | CTTAAG | 2 cut(s) | 1160, 3359 |
| VneI | GTGCAC | 2 cut(s) | 3498, 4391 |
| VpaK11BI | GGWCC | 3 cut(s) | 817, 1580, 3479 |
| VspI | ATTAAT | 1 cut(s) | 3492 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 3531, 3806 |
| XbaI | TCTAGA | 2 cut(s) | 3152, 3412 |
| XceI | RCATGY | 4 cut(s) | 3037, 3767, 4088, 4655 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1189 |
| XmiI | GTMKAC | 1 cut(s) | 1637 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1737 |
| XspI | CTAG | 9 cut(s) | 176, 846, 1584, 1682, 2178, 3153, 3413, 3827, 4972 |
| Zsp2I | ATGCAT | 3 cut(s) | 2056, 3039, 3351 |