ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccII | CGCG | 2 cut(s) | 60, 93 |
| AciI | CCGC | 2 cut(s) | 112, 302 |
| AcsI | RAATTY | 2 cut(s) | 220, 436 |
| AcvI | CACGTG | 1 cut(s) | 166 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AdeI | CACNNNGTG | 1 cut(s) | 287 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 203 |
| AgsI | TTSAA | 3 cut(s) | 178, 214, 371 |
| AleI | CACNNNNGTG | 2 cut(s) | 164, 252 |
| AluBI | AGCT | 2 cut(s) | 185, 512 |
| AluI | AGCT | 2 cut(s) | 185, 512 |
| Alw26I | GTCTC | 1 cut(s) | 71 |
| ApeKI | GCWGC | 1 cut(s) | 512 |
| ApoI | RAATTY | 2 cut(s) | 220, 436 |
| AspLEI | GCGC | 1 cut(s) | 10 |
| AspS9I | GGNCC | 2 cut(s) | 156, 476 |
| AsuHPI | GGTGA | 1 cut(s) | 299 |
| AvaII | GGWCC | 2 cut(s) | 156, 476 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BauI | CACGAG | 1 cut(s) | 83 |
| BbrPI | CACGTG | 1 cut(s) | 166 |
| BbvI | GCAGC | 1 cut(s) | 499 |
| BccI | CCATC | 2 cut(s) | 221, 443 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 437, 471 |
| BcoDI | GTCTC | 1 cut(s) | 71 |
| BfaI | CTAG | 2 cut(s) | 509, 516 |
| BfoI | RGCGCY | 1 cut(s) | 11 |
| BisI | GCNGC | 1 cut(s) | 513 |
| BlsI | GCNGC | 1 cut(s) | 514 |
| Bme18I | GGWCC | 2 cut(s) | 156, 476 |
| BmgT120I | GGNCC | 2 cut(s) | 156, 476 |
| BmiI | GGNNCC | 2 cut(s) | 9, 208 |
| BoxI | GACNNNNGTC | 1 cut(s) | 92 |
| BpuEI | CTTGAG | 1 cut(s) | 365 |
| BsaAI | YACGTR | 1 cut(s) | 166 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaI | GGTCTC | 1 cut(s) | 71 |
| BsaJI | CCNNGG | 1 cut(s) | 316 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 252, 282 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 203 |
| Bse1I | ACTGG | 1 cut(s) | 369 |
| BseDI | CCNNGG | 1 cut(s) | 316 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 203 |
| BseMII | CTCAG | 3 cut(s) | 333, 417, 497 |
| BseNI | ACTGG | 1 cut(s) | 369 |
| BseXI | GCAGC | 1 cut(s) | 499 |
| BsgI | GTGCAG | 1 cut(s) | 276 |
| Bsh1236I | CGCG | 2 cut(s) | 60, 93 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 203 |
| BsmAI | GTCTC | 1 cut(s) | 71 |
| BsmI | GAATGC | 1 cut(s) | 283 |
| Bso31I | GGTCTC | 1 cut(s) | 71 |
| Bsp68I | TCGCGA | 1 cut(s) | 60 |
| BspACI | CCGC | 2 cut(s) | 112, 302 |
| BspCNI | CTCAG | 3 cut(s) | 334, 416, 496 |
| BspFNI | CGCG | 2 cut(s) | 60, 93 |
| BspLI | GGNNCC | 2 cut(s) | 9, 208 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BspTNI | GGTCTC | 1 cut(s) | 71 |
| BsrI | ACTGG | 1 cut(s) | 369 |
| BssECI | CCNNGG | 1 cut(s) | 316 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| BssSI | CACGAG | 1 cut(s) | 83 |
| BssT1I | CCWWGG | 1 cut(s) | 316 |
| Bst2BI | CACGAG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 4 cut(s) | 156, 251, 394, 476 |
| Bst6I | CTCTTC | 1 cut(s) | 419 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstBAI | YACGTR | 1 cut(s) | 166 |
| BstC8I | GCNNGC | 2 cut(s) | 73, 104 |
| BstDEI | CTNAG | 4 cut(s) | 342, 403, 442, 483 |
| BstFNI | CGCG | 2 cut(s) | 60, 93 |
| BstH2I | RGCGCY | 1 cut(s) | 11 |
| BstHHI | GCGC | 1 cut(s) | 10 |
| BstMAI | GTCTC | 1 cut(s) | 71 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 99, 521 |
| BstNSI | RCATGY | 3 cut(s) | 102, 112, 422 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 92 |
| BstUI | CGCG | 2 cut(s) | 60, 93 |
| BstV1I | GCAGC | 1 cut(s) | 499 |
| BtsIMutI | CAGTG | 2 cut(s) | 362, 390 |
| BtuMI | TCGCGA | 1 cut(s) | 60 |
| Cac8I | GCNNGC | 2 cut(s) | 73, 104 |
| CfoI | GCGC | 1 cut(s) | 10 |
| Cfr13I | GGNCC | 2 cut(s) | 156, 476 |
| CseI | GACGC | 2 cut(s) | 82, 106 |
| CviAII | CATG | 4 cut(s) | 99, 109, 419, 521 |
| CviJI | RGCY | 8 cut(s) | 123, 185, 264, 321, 347, 361, 446, 512 |
| CviKI_1 | RGCY | 8 cut(s) | 123, 185, 264, 321, 347, 361, 446, 512 |
| DdeI | CTNAG | 4 cut(s) | 342, 403, 442, 483 |
| DinI | GGCGCC | 1 cut(s) | 9 |
| DraIII | CACNNNGTG | 1 cut(s) | 287 |
| Eam1104I | CTCTTC | 1 cut(s) | 419 |
| EarI | CTCTTC | 1 cut(s) | 419 |
| Eco130I | CCWWGG | 1 cut(s) | 316 |
| Eco31I | GGTCTC | 1 cut(s) | 71 |
| Eco47I | GGWCC | 2 cut(s) | 156, 476 |
| Eco72I | CACGTG | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 1 cut(s) | 316 |
| EgeI | GGCGCC | 1 cut(s) | 9 |
| EheI | GGCGCC | 1 cut(s) | 9 |
| ErhI | CCWWGG | 1 cut(s) | 316 |
| FaeI | CATG | 4 cut(s) | 102, 112, 422, 524 |
| FaiI | YATR | 7 cut(s) | 65, 100, 110, 350, 377, 420, 522 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 174, 206 |
| FatI | CATG | 4 cut(s) | 98, 108, 418, 520 |
| Fnu4HI | GCNGC | 1 cut(s) | 513 |
| Fsp4HI | GCNGC | 1 cut(s) | 513 |
| FspBI | CTAG | 2 cut(s) | 509, 516 |
| GlaI | GCGC | 1 cut(s) | 9 |
| GluI | GCNGC | 1 cut(s) | 513 |
| HaeII | RGCGCY | 1 cut(s) | 11 |
| HgaI | GACGC | 2 cut(s) | 82, 106 |
| HhaI | GCGC | 1 cut(s) | 10 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 4 cut(s) | 102, 112, 422, 524 |
| Hin6I | GCGC | 1 cut(s) | 8 |
| HinP1I | GCGC | 1 cut(s) | 8 |
| HincII | GTYRAC | 1 cut(s) | 387 |
| HindII | GTYRAC | 1 cut(s) | 387 |
| HindIII | AAGCTT | 1 cut(s) | 183 |
| HinfI | GANTC | 5 cut(s) | 29, 50, 88, 244, 354 |
| HphI | GGTGA | 1 cut(s) | 299 |
| Hpy166II | GTNNAC | 5 cut(s) | 152, 159, 290, 310, 387 |
| Hpy188I | TCNGA | 2 cut(s) | 328, 486 |
| Hpy188III | TCNNGA | 5 cut(s) | 59, 85, 132, 178, 371 |
| Hpy8I | GTNNAC | 5 cut(s) | 152, 159, 290, 310, 387 |
| Hpy99I | CGWCG | 1 cut(s) | 130 |
| HpyAV | CCTTC | 1 cut(s) | 200 |
| HpyCH4III | ACNGT | 4 cut(s) | 156, 251, 394, 476 |
| HpyCH4IV | ACGT | 1 cut(s) | 165 |
| HpyCH4V | TGCA | 3 cut(s) | 102, 257, 281 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 99, 521 |
| HpyF3I | CTNAG | 4 cut(s) | 342, 403, 442, 483 |
| HpySE526I | ACGT | 1 cut(s) | 165 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 4 cut(s) | 102, 112, 422, 524 |
| HspAI | GCGC | 1 cut(s) | 8 |
| KasI | GGCGCC | 1 cut(s) | 7 |
| LmnI | GCTCC | 1 cut(s) | 114 |
| LpnPI | CCDG | 4 cut(s) | 189, 243, 350, 492 |
| Lsp1109I | GCAGC | 1 cut(s) | 499 |
| MaeI | CTAG | 2 cut(s) | 509, 516 |
| MaeII | ACGT | 1 cut(s) | 165 |
| MaeIII | GTNAC | 5 cut(s) | 34, 85, 94, 129, 525 |
| MboII | GAAGA | 1 cut(s) | 436 |
| MluCI | AATT | 3 cut(s) | 215, 220, 436 |
| Mly113I | GGCGCC | 1 cut(s) | 8 |
| MlyI | GAGTC | 2 cut(s) | 23, 82 |
| MmeI | TCCRAC | 2 cut(s) | 27, 470 |
| MnlI | CCTC | 8 cut(s) | 24, 92, 207, 254, 337, 420, 469, 554 |
| MseI | TTAA | 2 cut(s) | 218, 414 |
| MslI | CAYNNNNRTG | 3 cut(s) | 107, 164, 252 |
| Mva1269I | GAATGC | 1 cut(s) | 283 |
| MvnI | CGCG | 2 cut(s) | 60, 93 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 99, 521 |
| NarI | GGCGCC | 1 cut(s) | 8 |
| NlaIII | CATG | 4 cut(s) | 102, 112, 422, 524 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 208 |
| NmuCI | GTSAC | 3 cut(s) | 85, 94, 129 |
| NruI | TCGCGA | 1 cut(s) | 60 |
| NspI | RCATGY | 3 cut(s) | 102, 112, 422 |
| OliI | CACNNNNGTG | 2 cut(s) | 164, 252 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 90 |
| PctI | GAATGC | 1 cut(s) | 283 |
| PfeI | GAWTC | 3 cut(s) | 50, 244, 354 |
| PkrI | GCNGC | 1 cut(s) | 514 |
| PleI | GAGTC | 2 cut(s) | 23, 82 |
| PluTI | GGCGCC | 1 cut(s) | 11 |
| PmaCI | CACGTG | 1 cut(s) | 166 |
| PmlI | CACGTG | 1 cut(s) | 166 |
| PpsI | GAGTC | 2 cut(s) | 23, 82 |
| Ppu21I | YACGTR | 1 cut(s) | 166 |
| PshAI | GACNNNNGTC | 1 cut(s) | 92 |
| PspCI | CACGTG | 1 cut(s) | 166 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 208 |
| PspPI | GGNCC | 2 cut(s) | 156, 476 |
| RruI | TCGCGA | 1 cut(s) | 60 |
| RseI | CAYNNNNRTG | 3 cut(s) | 107, 164, 252 |
| SaqAI | TTAA | 2 cut(s) | 218, 414 |
| SatI | GCNGC | 1 cut(s) | 513 |
| Sau96I | GGNCC | 2 cut(s) | 156, 476 |
| SchI | GAGTC | 2 cut(s) | 23, 82 |
| SetI | ASST | 9 cut(s) | 16, 168, 187, 199, 289, 295, 318, 514, 547 |
| SfoI | GGCGCC | 1 cut(s) | 9 |
| SinI | GGWCC | 2 cut(s) | 156, 476 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 107, 164, 252 |
| SmlI | CTYRAG | 1 cut(s) | 380 |
| SmoI | CTYRAG | 1 cut(s) | 380 |
| Sse9I | AATT | 3 cut(s) | 215, 220, 436 |
| SsiI | CCGC | 2 cut(s) | 112, 302 |
| SspDI | GGCGCC | 1 cut(s) | 7 |
| SspMI | CTAG | 2 cut(s) | 509, 516 |
| StyI | CCWWGG | 1 cut(s) | 316 |
| TaaI | ACNGT | 4 cut(s) | 156, 251, 394, 476 |
| TaiI | ACGT | 1 cut(s) | 168 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 3 cut(s) | 215, 220, 436 |
| TfiI | GAWTC | 3 cut(s) | 50, 244, 354 |
| Tru1I | TTAA | 2 cut(s) | 218, 414 |
| Tru9I | TTAA | 2 cut(s) | 218, 414 |
| TscAI | CASTG | 2 cut(s) | 369, 397 |
| TseFI | GTSAC | 3 cut(s) | 85, 94, 129 |
| TseI | GCWGC | 1 cut(s) | 512 |
| Tsp45I | GTSAC | 3 cut(s) | 85, 94, 129 |
| TspGWI | ACGGA | 2 cut(s) | 22, 53 |
| TspRI | CASTG | 2 cut(s) | 369, 397 |
| VpaK11BI | GGWCC | 2 cut(s) | 156, 476 |
| XapI | RAATTY | 2 cut(s) | 220, 436 |
| XceI | RCATGY | 3 cut(s) | 102, 112, 422 |
| XspI | CTAG | 2 cut(s) | 509, 516 |