ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 327 |
| AciI | CCGC | 2 cut(s) | 122, 708 |
| AclWI | GGATC | 1 cut(s) | 702 |
| AcuI | CTGAAG | 2 cut(s) | 560, 576 |
| AfaI | GTAC | 2 cut(s) | 518, 671 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 151, 426 |
| AgsI | TTSAA | 3 cut(s) | 257, 359, 665 |
| AjnI | CCWGG | 2 cut(s) | 45, 685 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 83, 115 |
| AluBI | AGCT | 1 cut(s) | 138 |
| AluI | AGCT | 1 cut(s) | 138 |
| Alw26I | GTCTC | 2 cut(s) | 80, 373 |
| AlwI | GGATC | 1 cut(s) | 702 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 322 |
| Ama87I | CYCGRG | 1 cut(s) | 150 |
| AoxI | GGCC | 1 cut(s) | 342 |
| ApeKI | GCWGC | 2 cut(s) | 271, 301 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 573 |
| AspS9I | GGNCC | 2 cut(s) | 43, 689 |
| AsuC2I | CCSGG | 1 cut(s) | 14 |
| AsuHPI | GGTGA | 1 cut(s) | 658 |
| AvaI | CYCGRG | 1 cut(s) | 150 |
| AvaII | GGWCC | 2 cut(s) | 43, 689 |
| BaeGI | GKGCMC | 1 cut(s) | 330 |
| BanI | GGYRCC | 1 cut(s) | 327 |
| BbvI | GCAGC | 2 cut(s) | 283, 313 |
| BccI | CCATC | 3 cut(s) | 545, 693, 730 |
| BceAI | ACGGC | 2 cut(s) | 135, 695 |
| BciT130I | CCWGG | 2 cut(s) | 47, 687 |
| BcnI | CCSGG | 1 cut(s) | 14 |
| BcoDI | GTCTC | 2 cut(s) | 80, 373 |
| BfaI | CTAG | 1 cut(s) | 171 |
| BisI | GCNGC | 3 cut(s) | 272, 302, 708 |
| BlsI | GCNGC | 3 cut(s) | 273, 303, 709 |
| Bme1390I | CCNGG | 3 cut(s) | 14, 47, 687 |
| Bme18I | GGWCC | 2 cut(s) | 43, 689 |
| BmeT110I | CYCGRG | 1 cut(s) | 150 |
| BmgT120I | GGNCC | 2 cut(s) | 43, 689 |
| BmiI | GGNNCC | 2 cut(s) | 11, 329 |
| BmrFI | CCNGG | 3 cut(s) | 14, 47, 687 |
| BmrI | ACTGGG | 1 cut(s) | 622 |
| BmuI | ACTGGG | 1 cut(s) | 622 |
| BpuEI | CTTGAG | 1 cut(s) | 362 |
| BpuMI | CCSGG | 1 cut(s) | 14 |
| Bsa29I | ATCGAT | 1 cut(s) | 697 |
| BsaJI | CCNNGG | 1 cut(s) | 46 |
| BsaWI | WCCGGW | 1 cut(s) | 691 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 644, 674 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 151, 426 |
| Bse1I | ACTGG | 1 cut(s) | 628 |
| BseBI | CCWGG | 2 cut(s) | 47, 687 |
| BseCI | ATCGAT | 1 cut(s) | 697 |
| BseDI | CCNNGG | 1 cut(s) | 46 |
| BseGI | GGATG | 2 cut(s) | 141, 156 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 151, 426 |
| BseNI | ACTGG | 1 cut(s) | 628 |
| BseRI | GAGGAG | 3 cut(s) | 247, 617, 656 |
| BseSI | GKGCMC | 1 cut(s) | 330 |
| BseXI | GCAGC | 2 cut(s) | 283, 313 |
| BsgI | GTGCAG | 1 cut(s) | 231 |
| BshFI | GGCC | 1 cut(s) | 344 |
| BshNI | GGYRCC | 1 cut(s) | 327 |
| BshVI | ATCGAT | 1 cut(s) | 697 |
| BsiHKCI | CYCGRG | 1 cut(s) | 150 |
| BsiSI | CCGG | 2 cut(s) | 13, 692 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 151, 426 |
| BsmAI | GTCTC | 2 cut(s) | 80, 373 |
| BsmBI | CGTCTC | 1 cut(s) | 80 |
| BsmI | GAATGC | 1 cut(s) | 709 |
| BsnI | GGCC | 1 cut(s) | 344 |
| BsoBI | CYCGRG | 1 cut(s) | 150 |
| Bsp1286I | GDGCHC | 1 cut(s) | 330 |
| Bsp143I | GATC | 2 cut(s) | 388, 694 |
| BspACI | CCGC | 2 cut(s) | 122, 708 |
| BspANI | GGCC | 1 cut(s) | 344 |
| BspDI | ATCGAT | 1 cut(s) | 697 |
| BspHI | TCATGA | 1 cut(s) | 286 |
| BspLI | GGNNCC | 2 cut(s) | 11, 329 |
| BspPI | GGATC | 1 cut(s) | 702 |
| BspT107I | GGYRCC | 1 cut(s) | 327 |
| BsrI | ACTGG | 1 cut(s) | 628 |
| BssECI | CCNNGG | 1 cut(s) | 46 |
| BssMI | GATC | 2 cut(s) | 388, 694 |
| Bst2UI | CCWGG | 2 cut(s) | 47, 687 |
| Bst4CI | ACNGT | 2 cut(s) | 367, 505 |
| Bst6I | CTCTTC | 2 cut(s) | 224, 579 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 424 |
| BstF5I | GGATG | 2 cut(s) | 141, 156 |
| BstKTI | GATC | 2 cut(s) | 391, 697 |
| BstMAI | GTCTC | 2 cut(s) | 80, 373 |
| BstMBI | GATC | 2 cut(s) | 388, 694 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 307 |
| BstNI | CCWGG | 2 cut(s) | 47, 687 |
| BstSCI | CCNGG | 3 cut(s) | 12, 45, 685 |
| BstSLI | GKGCMC | 1 cut(s) | 330 |
| BstV1I | GCAGC | 2 cut(s) | 283, 313 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 72 |
| Bsu15I | ATCGAT | 1 cut(s) | 697 |
| BsuRI | GGCC | 1 cut(s) | 344 |
| BsuTUI | ATCGAT | 1 cut(s) | 697 |
| BtsCI | GGATG | 2 cut(s) | 141, 156 |
| BtsI | GCAGTG | 1 cut(s) | 311 |
| BtsIMutI | CAGTG | 2 cut(s) | 311, 510 |
| CaiI | CAGNNNCTG | 1 cut(s) | 322 |
| CciI | TCATGA | 1 cut(s) | 286 |
| Cfr13I | GGNCC | 2 cut(s) | 43, 689 |
| ClaI | ATCGAT | 1 cut(s) | 697 |
| Csp6I | GTAC | 2 cut(s) | 517, 670 |
| CviAII | CATG | 3 cut(s) | 275, 287, 372 |
| CviJI | RGCY | 9 cut(s) | 20, 138, 253, 344, 376, 419, 473, 581, 656 |
| CviKI_1 | RGCY | 9 cut(s) | 20, 138, 253, 344, 376, 419, 473, 581, 656 |
| CviQI | GTAC | 2 cut(s) | 517, 670 |
| DpnI | GATC | 2 cut(s) | 390, 696 |
| DpnII | GATC | 2 cut(s) | 388, 694 |
| Eam1104I | CTCTTC | 2 cut(s) | 224, 579 |
| EarI | CTCTTC | 2 cut(s) | 224, 579 |
| EciI | GGCGGA | 1 cut(s) | 137 |
| Eco32I | GATATC | 1 cut(s) | 239 |
| Eco47I | GGWCC | 2 cut(s) | 43, 689 |
| Eco57I | CTGAAG | 2 cut(s) | 560, 576 |
| Eco88I | CYCGRG | 1 cut(s) | 150 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 424 |
| EcoRII | CCWGG | 2 cut(s) | 45, 685 |
| EcoRV | GATATC | 1 cut(s) | 239 |
| Esp3I | CGTCTC | 1 cut(s) | 80 |
| FaeI | CATG | 3 cut(s) | 278, 290, 375 |
| FatI | CATG | 3 cut(s) | 274, 286, 371 |
| Fnu4HI | GCNGC | 3 cut(s) | 272, 302, 708 |
| FokI | GGATG | 2 cut(s) | 128, 143 |
| Fsp4HI | GCNGC | 3 cut(s) | 272, 302, 708 |
| FspBI | CTAG | 1 cut(s) | 171 |
| GluI | GCNGC | 3 cut(s) | 272, 302, 708 |
| HaeIII | GGCC | 1 cut(s) | 344 |
| HapII | CCGG | 2 cut(s) | 13, 692 |
| Hin1II | CATG | 3 cut(s) | 278, 290, 375 |
| HinfI | GANTC | 2 cut(s) | 80, 257 |
| HpaII | CCGG | 2 cut(s) | 13, 692 |
| HphI | GGTGA | 1 cut(s) | 658 |
| Hpy166II | GTNNAC | 1 cut(s) | 43 |
| Hpy188I | TCNGA | 4 cut(s) | 85, 181, 192, 414 |
| Hpy188III | TCNNGA | 2 cut(s) | 226, 287 |
| Hpy8I | GTNNAC | 1 cut(s) | 43 |
| HpyAV | CCTTC | 3 cut(s) | 85, 600, 643 |
| HpyCH4III | ACNGT | 2 cut(s) | 367, 505 |
| HpyCH4IV | ACGT | 1 cut(s) | 313 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 212, 271 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 307 |
| HpySE526I | ACGT | 1 cut(s) | 313 |
| Hsp92II | CATG | 3 cut(s) | 278, 290, 375 |
| Kzo9I | GATC | 2 cut(s) | 388, 694 |
| Lsp1109I | GCAGC | 2 cut(s) | 283, 313 |
| MaeI | CTAG | 1 cut(s) | 171 |
| MaeII | ACGT | 1 cut(s) | 313 |
| MaeIII | GTNAC | 1 cut(s) | 595 |
| MalI | GATC | 2 cut(s) | 390, 696 |
| MboI | GATC | 2 cut(s) | 388, 694 |
| MboII | GAAGA | 6 cut(s) | 241, 361, 364, 494, 538, 566 |
| MhlI | GDGCHC | 1 cut(s) | 330 |
| MluCI | AATT | 2 cut(s) | 35, 441 |
| MmeI | TCCRAC | 1 cut(s) | 81 |
| MroXI | GAANNNNTTC | 1 cut(s) | 573 |
| MspI | CCGG | 2 cut(s) | 13, 692 |
| MspR9I | CCNGG | 3 cut(s) | 14, 47, 687 |
| Mva1269I | GAATGC | 1 cut(s) | 709 |
| MvaI | CCWGG | 2 cut(s) | 47, 687 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 307 |
| NciI | CCSGG | 1 cut(s) | 14 |
| NdeII | GATC | 2 cut(s) | 388, 694 |
| NlaIII | CATG | 3 cut(s) | 278, 290, 375 |
| NlaIV | GGNNCC | 2 cut(s) | 11, 329 |
| PagI | TCATGA | 1 cut(s) | 286 |
| PctI | GAATGC | 1 cut(s) | 709 |
| PdmI | GAANNNNTTC | 1 cut(s) | 573 |
| PfeI | GAWTC | 2 cut(s) | 80, 257 |
| PfoI | TCCNGGA | 1 cut(s) | 12 |
| PkrI | GCNGC | 3 cut(s) | 273, 303, 709 |
| Psp6I | CCWGG | 2 cut(s) | 45, 685 |
| PspGI | CCWGG | 2 cut(s) | 45, 685 |
| PspN4I | GGNNCC | 2 cut(s) | 11, 329 |
| PspPI | GGNCC | 2 cut(s) | 43, 689 |
| PstNI | CAGNNNCTG | 1 cut(s) | 322 |
| RsaI | GTAC | 2 cut(s) | 518, 671 |
| RsaNI | GTAC | 2 cut(s) | 517, 670 |
| SatI | GCNGC | 3 cut(s) | 272, 302, 708 |
| Sau3AI | GATC | 2 cut(s) | 388, 694 |
| Sau96I | GGNCC | 2 cut(s) | 43, 689 |
| ScrFI | CCNGG | 3 cut(s) | 14, 47, 687 |
| SduI | GDGCHC | 1 cut(s) | 330 |
| SinI | GGWCC | 2 cut(s) | 43, 689 |
| SmlI | CTYRAG | 1 cut(s) | 377 |
| SmoI | CTYRAG | 1 cut(s) | 377 |
| Sse9I | AATT | 2 cut(s) | 35, 441 |
| SsiI | CCGC | 2 cut(s) | 122, 708 |
| SspMI | CTAG | 1 cut(s) | 171 |
| StyD4I | CCNGG | 3 cut(s) | 12, 45, 685 |
| TaaI | ACNGT | 2 cut(s) | 367, 505 |
| TaiI | ACGT | 1 cut(s) | 316 |
| TaqI | TCGA | 2 cut(s) | 347, 697 |
| TasI | AATT | 2 cut(s) | 35, 441 |
| TauI | GCSGC | 1 cut(s) | 710 |
| TfiI | GAWTC | 2 cut(s) | 80, 257 |
| TscAI | CASTG | 2 cut(s) | 311, 510 |
| TseI | GCWGC | 2 cut(s) | 271, 301 |
| TspDTI | ATGAA | 4 cut(s) | 130, 398, 477, 623 |
| TspRI | CASTG | 2 cut(s) | 311, 510 |
| VpaK11BI | GGWCC | 2 cut(s) | 43, 689 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 424 |
| XmnI | GAANNNNTTC | 1 cut(s) | 573 |
| XspI | CTAG | 1 cut(s) | 171 |