ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 108 |
| AdeI | CACNNNGTG | 1 cut(s) | 404 |
| AfaI | GTAC | 2 cut(s) | 349, 442 |
| AgsI | TTSAA | 2 cut(s) | 287, 488 |
| AjiI | CACGTC | 1 cut(s) | 245 |
| AjnI | CCWGG | 5 cut(s) | 62, 116, 270, 302, 320 |
| AluBI | AGCT | 1 cut(s) | 124 |
| AluI | AGCT | 1 cut(s) | 124 |
| Alw26I | GTCTC | 1 cut(s) | 61 |
| AlwI | GGATC | 1 cut(s) | 108 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 127 |
| AoxI | GGCC | 1 cut(s) | 214 |
| ApeKI | GCWGC | 2 cut(s) | 121, 124 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| AspS9I | GGNCC | 1 cut(s) | 215 |
| AsuC2I | CCSGG | 2 cut(s) | 51, 218 |
| AsuHPI | GGTGA | 1 cut(s) | 232 |
| BbvI | GCAGC | 2 cut(s) | 111, 133 |
| BccI | CCATC | 1 cut(s) | 206 |
| BceAI | ACGGC | 1 cut(s) | 248 |
| BciT130I | CCWGG | 5 cut(s) | 64, 118, 272, 304, 322 |
| BclI | TGATCA | 1 cut(s) | 412 |
| BcnI | CCSGG | 2 cut(s) | 51, 218 |
| BcoDI | GTCTC | 1 cut(s) | 61 |
| BfaI | CTAG | 3 cut(s) | 402, 438, 524 |
| BglII | AGATCT | 1 cut(s) | 265 |
| BisI | GCNGC | 2 cut(s) | 122, 125 |
| BlsI | GCNGC | 2 cut(s) | 123, 126 |
| Bme1390I | CCNGG | 7 cut(s) | 51, 64, 118, 218, 272, 304, 322 |
| BmgBI | CACGTC | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 1 cut(s) | 215 |
| BmiI | GGNNCC | 1 cut(s) | 500 |
| BmrFI | CCNGG | 7 cut(s) | 51, 64, 118, 218, 272, 304, 322 |
| BmsI | GCATC | 1 cut(s) | 28 |
| BpmI | CTGGAG | 2 cut(s) | 85, 485 |
| BpuEI | CTTGAG | 1 cut(s) | 76 |
| BpuMI | CCSGG | 2 cut(s) | 51, 218 |
| BsaJI | CCNNGG | 1 cut(s) | 158 |
| Bse1I | ACTGG | 1 cut(s) | 79 |
| Bse3DI | GCAATG | 1 cut(s) | 152 |
| BseBI | CCWGG | 5 cut(s) | 64, 118, 272, 304, 322 |
| BseDI | CCNNGG | 1 cut(s) | 158 |
| BseGI | GGATG | 1 cut(s) | 417 |
| BseMI | GCAATG | 1 cut(s) | 152 |
| BseNI | ACTGG | 1 cut(s) | 79 |
| BseRI | GAGGAG | 1 cut(s) | 238 |
| BseXI | GCAGC | 2 cut(s) | 111, 133 |
| BshFI | GGCC | 1 cut(s) | 216 |
| BsiSI | CCGG | 2 cut(s) | 50, 218 |
| BslFI | GGGAC | 1 cut(s) | 19 |
| BsmAI | GTCTC | 1 cut(s) | 61 |
| BsmFI | GGGAC | 1 cut(s) | 19 |
| BsmI | GAATGC | 1 cut(s) | 505 |
| BsnI | GGCC | 1 cut(s) | 216 |
| Bsp1407I | TGTACA | 1 cut(s) | 347 |
| Bsp143I | GATC | 3 cut(s) | 113, 265, 412 |
| BspANI | GGCC | 1 cut(s) | 216 |
| BspLI | GGNNCC | 1 cut(s) | 500 |
| BspPI | GGATC | 1 cut(s) | 108 |
| BsrDI | GCAATG | 1 cut(s) | 152 |
| BsrGI | TGTACA | 1 cut(s) | 347 |
| BsrI | ACTGG | 1 cut(s) | 79 |
| BssECI | CCNNGG | 1 cut(s) | 158 |
| BssMI | GATC | 3 cut(s) | 113, 265, 412 |
| BssT1I | CCWWGG | 1 cut(s) | 158 |
| Bst2UI | CCWGG | 5 cut(s) | 64, 118, 272, 304, 322 |
| Bst4CI | ACNGT | 1 cut(s) | 100 |
| BstAUI | TGTACA | 1 cut(s) | 347 |
| BstDEI | CTNAG | 1 cut(s) | 277 |
| BstF5I | GGATG | 1 cut(s) | 417 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstKTI | GATC | 3 cut(s) | 116, 268, 415 |
| BstMAI | GTCTC | 1 cut(s) | 61 |
| BstMBI | GATC | 3 cut(s) | 113, 265, 412 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 51 |
| BstNI | CCWGG | 5 cut(s) | 64, 118, 272, 304, 322 |
| BstSCI | CCNGG | 7 cut(s) | 49, 62, 116, 216, 270, 302, 320 |
| BstV1I | GCAGC | 2 cut(s) | 111, 133 |
| BstX2I | RGATCY | 2 cut(s) | 113, 265 |
| BstYI | RGATCY | 2 cut(s) | 113, 265 |
| BsuRI | GGCC | 1 cut(s) | 216 |
| BtrI | CACGTC | 1 cut(s) | 245 |
| BtsCI | GGATG | 1 cut(s) | 417 |
| CaiI | CAGNNNCTG | 1 cut(s) | 127 |
| CfoI | GCGC | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 1 cut(s) | 215 |
| CsiI | ACCWGGT | 2 cut(s) | 302, 320 |
| Csp6I | GTAC | 2 cut(s) | 348, 441 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 81, 116 |
| CviAII | CATG | 3 cut(s) | 25, 357, 537 |
| CviJI | RGCY | 8 cut(s) | 54, 124, 216, 375, 437, 469, 491, 499 |
| CviKI_1 | RGCY | 8 cut(s) | 54, 124, 216, 375, 437, 469, 491, 499 |
| CviQI | GTAC | 2 cut(s) | 348, 441 |
| DdeI | CTNAG | 1 cut(s) | 277 |
| DpnI | GATC | 3 cut(s) | 115, 267, 414 |
| DpnII | GATC | 3 cut(s) | 113, 265, 412 |
| DraIII | CACNNNGTG | 1 cut(s) | 404 |
| Eco130I | CCWWGG | 1 cut(s) | 158 |
| EcoRII | CCWGG | 5 cut(s) | 62, 116, 270, 302, 320 |
| EcoT14I | CCWWGG | 1 cut(s) | 158 |
| ErhI | CCWWGG | 1 cut(s) | 158 |
| FaeI | CATG | 3 cut(s) | 28, 360, 540 |
| FaqI | GGGAC | 1 cut(s) | 19 |
| FatI | CATG | 3 cut(s) | 24, 356, 536 |
| FbaI | TGATCA | 1 cut(s) | 412 |
| Fnu4HI | GCNGC | 2 cut(s) | 122, 125 |
| FokI | GGATG | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 2 cut(s) | 122, 125 |
| FspBI | CTAG | 3 cut(s) | 402, 438, 524 |
| GlaI | GCGC | 1 cut(s) | 18 |
| GluI | GCNGC | 2 cut(s) | 122, 125 |
| GsuI | CTGGAG | 2 cut(s) | 85, 485 |
| HaeIII | GGCC | 1 cut(s) | 216 |
| HapII | CCGG | 2 cut(s) | 50, 218 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin1II | CATG | 3 cut(s) | 28, 360, 540 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| HinfI | GANTC | 2 cut(s) | 407, 559 |
| HpaII | CCGG | 2 cut(s) | 50, 218 |
| HphI | GGTGA | 1 cut(s) | 232 |
| Hpy166II | GTNNAC | 2 cut(s) | 230, 350 |
| Hpy188I | TCNGA | 7 cut(s) | 60, 142, 297, 316, 412, 465, 511 |
| Hpy188III | TCNNGA | 2 cut(s) | 93, 332 |
| Hpy8I | GTNNAC | 2 cut(s) | 230, 350 |
| Hpy99I | CGWCG | 1 cut(s) | 246 |
| HpyAV | CCTTC | 2 cut(s) | 35, 363 |
| HpyCH4III | ACNGT | 1 cut(s) | 100 |
| HpyCH4IV | ACGT | 3 cut(s) | 244, 328, 460 |
| HpyCH4V | TGCA | 1 cut(s) | 380 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 51 |
| HpyF3I | CTNAG | 1 cut(s) | 277 |
| HpySE526I | ACGT | 3 cut(s) | 244, 328, 460 |
| Hsp92II | CATG | 3 cut(s) | 28, 360, 540 |
| HspAI | GCGC | 1 cut(s) | 17 |
| Ksp22I | TGATCA | 1 cut(s) | 412 |
| Kzo9I | GATC | 3 cut(s) | 113, 265, 412 |
| LmnI | GCTCC | 2 cut(s) | 103, 504 |
| Lsp1109I | GCAGC | 2 cut(s) | 111, 133 |
| LweI | GCATC | 1 cut(s) | 28 |
| MabI | ACCWGGT | 2 cut(s) | 302, 320 |
| MaeI | CTAG | 3 cut(s) | 402, 438, 524 |
| MaeII | ACGT | 3 cut(s) | 244, 328, 460 |
| MaeIII | GTNAC | 4 cut(s) | 324, 404, 550, 574 |
| MalI | GATC | 3 cut(s) | 115, 267, 414 |
| MboI | GATC | 3 cut(s) | 113, 265, 412 |
| MboII | GAAGA | 2 cut(s) | 217, 542 |
| MfeI | CAATTG | 1 cut(s) | 450 |
| MflI | RGATCY | 2 cut(s) | 113, 265 |
| MluCI | AATT | 2 cut(s) | 450, 543 |
| MlyI | GAGTC | 1 cut(s) | 401 |
| MmeI | TCCRAC | 1 cut(s) | 83 |
| MnlI | CCTC | 2 cut(s) | 216, 459 |
| MseI | TTAA | 3 cut(s) | 180, 192, 480 |
| MslI | CAYNNNNRTG | 2 cut(s) | 29, 355 |
| MspA1I | CMGCKG | 1 cut(s) | 124 |
| MspI | CCGG | 2 cut(s) | 50, 218 |
| MspR9I | CCNGG | 7 cut(s) | 51, 64, 118, 218, 272, 304, 322 |
| MunI | CAATTG | 1 cut(s) | 450 |
| Mva1269I | GAATGC | 1 cut(s) | 505 |
| MvaI | CCWGG | 5 cut(s) | 64, 118, 272, 304, 322 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 51 |
| NciI | CCSGG | 2 cut(s) | 51, 218 |
| NdeII | GATC | 3 cut(s) | 113, 265, 412 |
| NlaIII | CATG | 3 cut(s) | 28, 360, 540 |
| NlaIV | GGNNCC | 1 cut(s) | 500 |
| NmuCI | GTSAC | 2 cut(s) | 404, 550 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 238 |
| PctI | GAATGC | 1 cut(s) | 505 |
| PfeI | GAWTC | 1 cut(s) | 559 |
| PfoI | TCCNGGA | 1 cut(s) | 270 |
| PkrI | GCNGC | 2 cut(s) | 123, 126 |
| PleI | GAGTC | 1 cut(s) | 401 |
| PpsI | GAGTC | 1 cut(s) | 401 |
| Psp6I | CCWGG | 5 cut(s) | 62, 116, 270, 302, 320 |
| PspGI | CCWGG | 5 cut(s) | 62, 116, 270, 302, 320 |
| PspN4I | GGNNCC | 1 cut(s) | 500 |
| PspPI | GGNCC | 1 cut(s) | 215 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 222, 254 |
| PstNI | CAGNNNCTG | 1 cut(s) | 127 |
| PsuI | RGATCY | 2 cut(s) | 113, 265 |
| PvuII | CAGCTG | 1 cut(s) | 124 |
| RsaI | GTAC | 2 cut(s) | 349, 442 |
| RsaNI | GTAC | 2 cut(s) | 348, 441 |
| RseI | CAYNNNNRTG | 2 cut(s) | 29, 355 |
| SaqAI | TTAA | 3 cut(s) | 180, 192, 480 |
| SatI | GCNGC | 2 cut(s) | 122, 125 |
| Sau3AI | GATC | 3 cut(s) | 113, 265, 412 |
| Sau96I | GGNCC | 1 cut(s) | 215 |
| SchI | GAGTC | 1 cut(s) | 401 |
| ScrFI | CCNGG | 7 cut(s) | 51, 64, 118, 218, 272, 304, 322 |
| SetI | ASST | 9 cut(s) | 65, 126, 247, 305, 326, 331, 355, 403, 463 |
| SexAI | ACCWGGT | 2 cut(s) | 302, 320 |
| SfaNI | GCATC | 1 cut(s) | 28 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 29, 355 |
| SmlI | CTYRAG | 1 cut(s) | 91 |
| SmoI | CTYRAG | 1 cut(s) | 91 |
| Sse9I | AATT | 2 cut(s) | 450, 543 |
| SspMI | CTAG | 3 cut(s) | 402, 438, 524 |
| StyD4I | CCNGG | 7 cut(s) | 49, 62, 116, 216, 270, 302, 320 |
| StyI | CCWWGG | 1 cut(s) | 158 |
| TaaI | ACNGT | 1 cut(s) | 100 |
| TaiI | ACGT | 3 cut(s) | 247, 331, 463 |
| TasI | AATT | 2 cut(s) | 450, 543 |
| TatI | WGTACW | 2 cut(s) | 347, 440 |
| TfiI | GAWTC | 1 cut(s) | 559 |
| Tru1I | TTAA | 3 cut(s) | 180, 192, 480 |
| Tru9I | TTAA | 3 cut(s) | 180, 192, 480 |
| TseFI | GTSAC | 2 cut(s) | 404, 550 |
| TseI | GCWGC | 2 cut(s) | 121, 124 |
| Tsp45I | GTSAC | 2 cut(s) | 404, 550 |
| TspDTI | ATGAA | 4 cut(s) | 141, 198, 345, 380 |
| XspI | CTAG | 3 cut(s) | 402, 438, 524 |