ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 20, 81, 588 |
| AcsI | RAATTY | 3 cut(s) | 452, 646, 682 |
| AcuI | CTGAAG | 3 cut(s) | 519, 824, 840 |
| AcyI | GRCGYC | 1 cut(s) | 238 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 150, 151, 176, 466 |
| AgsI | TTSAA | 2 cut(s) | 160, 638 |
| AjnI | CCWGG | 2 cut(s) | 71, 854 |
| AluBI | AGCT | 1 cut(s) | 261 |
| AluI | AGCT | 1 cut(s) | 261 |
| Alw26I | GTCTC | 3 cut(s) | 232, 276, 374 |
| Ama87I | CYCGRG | 1 cut(s) | 541 |
| AoxI | GGCC | 3 cut(s) | 108, 279, 743 |
| ApoI | RAATTY | 3 cut(s) | 452, 646, 682 |
| AseI | ATTAAT | 1 cut(s) | 381 |
| AspS9I | GGNCC | 1 cut(s) | 108 |
| AsuC2I | CCSGG | 1 cut(s) | 643 |
| AsuHPI | GGTGA | 6 cut(s) | 191, 311, 449, 605, 686, 799 |
| AsuII | TTCGAA | 1 cut(s) | 255 |
| AvaI | CYCGRG | 1 cut(s) | 541 |
| AxyI | CCTNAGG | 1 cut(s) | 708 |
| BccI | CCATC | 4 cut(s) | 296, 415, 468, 512 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 27, 338, 372 |
| BciT130I | CCWGG | 2 cut(s) | 73, 856 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcnI | CCSGG | 1 cut(s) | 643 |
| BcoDI | GTCTC | 3 cut(s) | 232, 276, 374 |
| BfaI | CTAG | 1 cut(s) | 150 |
| Bme1390I | CCNGG | 3 cut(s) | 73, 643, 856 |
| BmeT110I | CYCGRG | 1 cut(s) | 541 |
| BmgT120I | GGNCC | 1 cut(s) | 108 |
| BmrFI | CCNGG | 3 cut(s) | 73, 643, 856 |
| BmsI | GCATC | 1 cut(s) | 7 |
| Bpu10I | CCTNAGC | 1 cut(s) | 783 |
| Bpu14I | TTCGAA | 1 cut(s) | 255 |
| BpuEI | CTTGAG | 1 cut(s) | 674 |
| BpuMI | CCSGG | 1 cut(s) | 643 |
| BsaAI | YACGTR | 1 cut(s) | 434 |
| BsaHI | GRCGYC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 242, 641 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 150, 151, 176, 466 |
| Bse1I | ACTGG | 1 cut(s) | 501 |
| Bse21I | CCTNAGG | 1 cut(s) | 708 |
| BseBI | CCWGG | 2 cut(s) | 73, 856 |
| BseDI | CCNNGG | 3 cut(s) | 30, 242, 641 |
| BseGI | GGATG | 2 cut(s) | 26, 523 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 150, 151, 176, 466 |
| BseMII | CTCAG | 1 cut(s) | 731 |
| BseNI | ACTGG | 1 cut(s) | 501 |
| BshFI | GGCC | 3 cut(s) | 110, 281, 745 |
| BsiHKCI | CYCGRG | 1 cut(s) | 541 |
| BsiSI | CCGG | 1 cut(s) | 643 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 150, 151, 176, 466 |
| BsmAI | GTCTC | 3 cut(s) | 232, 276, 374 |
| BsmBI | CGTCTC | 1 cut(s) | 374 |
| BsmI | GAATGC | 1 cut(s) | 633 |
| BsnI | GGCC | 3 cut(s) | 110, 281, 745 |
| BsoBI | CYCGRG | 1 cut(s) | 541 |
| Bsp119I | TTCGAA | 1 cut(s) | 255 |
| Bsp143I | GATC | 4 cut(s) | 181, 736, 765, 865 |
| BspACI | CCGC | 3 cut(s) | 20, 81, 588 |
| BspANI | GGCC | 3 cut(s) | 110, 281, 745 |
| BspCNI | CTCAG | 1 cut(s) | 732 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspT104I | TTCGAA | 1 cut(s) | 255 |
| BsrI | ACTGG | 1 cut(s) | 501 |
| BssECI | CCNNGG | 3 cut(s) | 30, 242, 641 |
| BssMI | GATC | 4 cut(s) | 181, 736, 765, 865 |
| BssNI | GRCGYC | 1 cut(s) | 238 |
| Bst2UI | CCWGG | 2 cut(s) | 73, 856 |
| Bst4CI | ACNGT | 1 cut(s) | 9 |
| BstACI | GRCGYC | 1 cut(s) | 238 |
| BstBAI | YACGTR | 1 cut(s) | 434 |
| BstBI | TTCGAA | 1 cut(s) | 255 |
| BstDEI | CTNAG | 4 cut(s) | 486, 708, 740, 783 |
| BstF5I | GGATG | 2 cut(s) | 26, 523 |
| BstKTI | GATC | 4 cut(s) | 184, 739, 768, 868 |
| BstMAI | GTCTC | 3 cut(s) | 232, 276, 374 |
| BstMBI | GATC | 4 cut(s) | 181, 736, 765, 865 |
| BstNI | CCWGG | 2 cut(s) | 73, 856 |
| BstNSI | RCATGY | 2 cut(s) | 485, 695 |
| BstSCI | CCNGG | 3 cut(s) | 71, 641, 854 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 72 |
| Bsu36I | CCTNAGG | 1 cut(s) | 708 |
| BsuRI | GGCC | 3 cut(s) | 110, 281, 745 |
| BtsCI | GGATG | 2 cut(s) | 26, 523 |
| CciI | TCATGA | 1 cut(s) | 274 |
| Cfr13I | GGNCC | 1 cut(s) | 108 |
| CseI | GACGC | 1 cut(s) | 227 |
| CviAII | CATG | 4 cut(s) | 176, 275, 482, 692 |
| CviJI | RGCY | 7 cut(s) | 110, 261, 281, 470, 745, 802, 818 |
| CviKI_1 | RGCY | 7 cut(s) | 110, 261, 281, 470, 745, 802, 818 |
| DdeI | CTNAG | 4 cut(s) | 486, 708, 740, 783 |
| DpnI | GATC | 4 cut(s) | 183, 738, 767, 867 |
| DpnII | GATC | 4 cut(s) | 181, 736, 765, 865 |
| Eco147I | AGGCCT | 2 cut(s) | 281, 745 |
| Eco57I | CTGAAG | 3 cut(s) | 519, 824, 840 |
| Eco81I | CCTNAGG | 1 cut(s) | 708 |
| Eco88I | CYCGRG | 1 cut(s) | 541 |
| EcoO109I | RGGNCCY | 1 cut(s) | 108 |
| EcoRII | CCWGG | 2 cut(s) | 71, 854 |
| EcoT22I | ATGCAT | 1 cut(s) | 693 |
| Esp3I | CGTCTC | 1 cut(s) | 374 |
| FaeI | CATG | 4 cut(s) | 179, 278, 485, 695 |
| FatI | CATG | 4 cut(s) | 175, 274, 481, 691 |
| FauNDI | CATATG | 1 cut(s) | 612 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| FokI | GGATG | 2 cut(s) | 13, 530 |
| FspBI | CTAG | 1 cut(s) | 150 |
| HaeIII | GGCC | 3 cut(s) | 110, 281, 745 |
| HapII | CCGG | 1 cut(s) | 643 |
| HgaI | GACGC | 1 cut(s) | 227 |
| Hin1I | GRCGYC | 1 cut(s) | 238 |
| Hin1II | CATG | 4 cut(s) | 179, 278, 485, 695 |
| HindIII | AAGCTT | 1 cut(s) | 259 |
| HinfI | GANTC | 4 cut(s) | 355, 539, 656, 703 |
| HpaII | CCGG | 1 cut(s) | 643 |
| HphI | GGTGA | 6 cut(s) | 191, 311, 449, 605, 686, 799 |
| Hpy166II | GTNNAC | 1 cut(s) | 565 |
| Hpy188I | TCNGA | 8 cut(s) | 34, 133, 243, 538, 702, 741, 841, 865 |
| Hpy188III | TCNNGA | 3 cut(s) | 14, 275, 722 |
| Hpy8I | GTNNAC | 1 cut(s) | 565 |
| HpyAV | CCTTC | 3 cut(s) | 70, 156, 547 |
| HpyCH4III | ACNGT | 1 cut(s) | 9 |
| HpyCH4IV | ACGT | 3 cut(s) | 320, 398, 433 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 167, 349, 633, 691, 759 |
| HpyF3I | CTNAG | 4 cut(s) | 486, 708, 740, 783 |
| HpySE526I | ACGT | 3 cut(s) | 320, 398, 433 |
| Hsp92I | GRCGYC | 1 cut(s) | 238 |
| Hsp92II | CATG | 4 cut(s) | 179, 278, 485, 695 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 4 cut(s) | 181, 736, 765, 865 |
| LweI | GCATC | 1 cut(s) | 7 |
| MaeI | CTAG | 1 cut(s) | 150 |
| MaeII | ACGT | 3 cut(s) | 320, 398, 433 |
| MaeIII | GTNAC | 2 cut(s) | 394, 437 |
| MalI | GATC | 4 cut(s) | 183, 738, 767, 867 |
| MboI | GATC | 4 cut(s) | 181, 736, 765, 865 |
| MboII | GAAGA | 4 cut(s) | 179, 207, 448, 833 |
| MluCI | AATT | 8 cut(s) | 35, 192, 208, 382, 452, 601, 646, 682 |
| MlyI | GAGTC | 2 cut(s) | 533, 665 |
| MmeI | TCCRAC | 1 cut(s) | 287 |
| MnlI | CCTC | 8 cut(s) | 40, 133, 237, 271, 280, 404, 508, 735 |
| Mph1103I | ATGCAT | 1 cut(s) | 693 |
| MseI | TTAA | 2 cut(s) | 381, 714 |
| MslI | CAYNNNNRTG | 2 cut(s) | 480, 578 |
| MspA1I | CMGCKG | 1 cut(s) | 590 |
| MspI | CCGG | 1 cut(s) | 643 |
| MspR9I | CCNGG | 3 cut(s) | 73, 643, 856 |
| Mva1269I | GAATGC | 1 cut(s) | 633 |
| MvaI | CCWGG | 2 cut(s) | 73, 856 |
| NciI | CCSGG | 1 cut(s) | 643 |
| NdeI | CATATG | 1 cut(s) | 612 |
| NdeII | GATC | 4 cut(s) | 181, 736, 765, 865 |
| NlaIII | CATG | 4 cut(s) | 179, 278, 485, 695 |
| NmuCI | GTSAC | 1 cut(s) | 437 |
| NsiI | ATGCAT | 1 cut(s) | 693 |
| NspI | RCATGY | 2 cut(s) | 485, 695 |
| NspV | TTCGAA | 1 cut(s) | 255 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PceI | AGGCCT | 2 cut(s) | 281, 745 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 364 |
| PctI | GAATGC | 1 cut(s) | 633 |
| PfeI | GAWTC | 2 cut(s) | 355, 703 |
| PleI | GAGTC | 2 cut(s) | 533, 664 |
| PpsI | GAGTC | 2 cut(s) | 533, 664 |
| Ppu21I | YACGTR | 1 cut(s) | 434 |
| PshBI | ATTAAT | 1 cut(s) | 381 |
| Psp6I | CCWGG | 2 cut(s) | 71, 854 |
| PspGI | CCWGG | 2 cut(s) | 71, 854 |
| PspPI | GGNCC | 1 cut(s) | 108 |
| RseI | CAYNNNNRTG | 2 cut(s) | 480, 578 |
| SaqAI | TTAA | 2 cut(s) | 381, 714 |
| Sau3AI | GATC | 4 cut(s) | 181, 736, 765, 865 |
| Sau96I | GGNCC | 1 cut(s) | 108 |
| SchI | GAGTC | 2 cut(s) | 533, 665 |
| ScrFI | CCNGG | 3 cut(s) | 73, 643, 856 |
| SfaNI | GCATC | 1 cut(s) | 7 |
| SfuI | TTCGAA | 1 cut(s) | 255 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 480, 578 |
| SmlI | CTYRAG | 1 cut(s) | 653 |
| SmoI | CTYRAG | 1 cut(s) | 653 |
| Sse9I | AATT | 8 cut(s) | 35, 192, 208, 382, 452, 601, 646, 682 |
| SseBI | AGGCCT | 2 cut(s) | 281, 745 |
| SsiI | CCGC | 3 cut(s) | 20, 81, 588 |
| SspMI | CTAG | 1 cut(s) | 150 |
| StuI | AGGCCT | 2 cut(s) | 281, 745 |
| StyD4I | CCNGG | 3 cut(s) | 71, 641, 854 |
| TaaI | ACNGT | 1 cut(s) | 9 |
| TaiI | ACGT | 3 cut(s) | 323, 401, 436 |
| TaqI | TCGA | 3 cut(s) | 13, 42, 255 |
| TasI | AATT | 8 cut(s) | 35, 192, 208, 382, 452, 601, 646, 682 |
| TfiI | GAWTC | 2 cut(s) | 355, 703 |
| Tru1I | TTAA | 2 cut(s) | 381, 714 |
| Tru9I | TTAA | 2 cut(s) | 381, 714 |
| TseFI | GTSAC | 1 cut(s) | 437 |
| Tsp45I | GTSAC | 1 cut(s) | 437 |
| TspDTI | ATGAA | 2 cut(s) | 164, 562 |
| VspI | ATTAAT | 1 cut(s) | 381 |
| XapI | RAATTY | 3 cut(s) | 452, 646, 682 |
| XceI | RCATGY | 2 cut(s) | 485, 695 |
| XspI | CTAG | 1 cut(s) | 150 |
| Zsp2I | ATGCAT | 1 cut(s) | 693 |