ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 241 |
| AccI | GTMKAC | 1 cut(s) | 557 |
| AccII | CGCG | 2 cut(s) | 313, 346 |
| AciI | CCGC | 3 cut(s) | 294, 311, 353 |
| AclWI | GGATC | 1 cut(s) | 50 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 568 |
| AcuI | CTGAAG | 1 cut(s) | 743 |
| AfaI | GTAC | 1 cut(s) | 607 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 184, 475, 615 |
| AgeI | ACCGGT | 1 cut(s) | 363 |
| AgsI | TTSAA | 5 cut(s) | 73, 140, 433, 545, 739 |
| AjnI | CCWGG | 1 cut(s) | 560 |
| AluBI | AGCT | 2 cut(s) | 509, 699 |
| AluI | AGCT | 2 cut(s) | 509, 699 |
| Alw26I | GTCTC | 3 cut(s) | 113, 387, 712 |
| AlwI | GGATC | 1 cut(s) | 50 |
| Ama87I | CYCGRG | 1 cut(s) | 639 |
| AoxI | GGCC | 4 cut(s) | 3, 66, 298, 466 |
| ApeKI | GCWGC | 2 cut(s) | 646, 817 |
| ApoI | RAATTY | 1 cut(s) | 568 |
| AsiGI | ACCGGT | 1 cut(s) | 363 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 144 |
| AspLEI | GCGC | 3 cut(s) | 166, 321, 346 |
| AspS9I | GGNCC | 5 cut(s) | 66, 258, 299, 361, 467 |
| AsuHPI | GGTGA | 2 cut(s) | 779, 796 |
| AvaI | CYCGRG | 1 cut(s) | 639 |
| AvaII | GGWCC | 2 cut(s) | 258, 361 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbvI | GCAGC | 2 cut(s) | 658, 829 |
| BccI | CCATC | 1 cut(s) | 458 |
| BceAI | ACGGC | 1 cut(s) | 366 |
| BciT130I | CCWGG | 1 cut(s) | 562 |
| BciVI | GTATCC | 1 cut(s) | 394 |
| BcoDI | GTCTC | 3 cut(s) | 113, 387, 712 |
| BfaI | CTAG | 3 cut(s) | 167, 284, 357 |
| BfmI | CTRYAG | 1 cut(s) | 689 |
| BfoI | RGCGCY | 2 cut(s) | 167, 322 |
| BfuAI | ACCTGC | 1 cut(s) | 241 |
| BfuI | GTATCC | 1 cut(s) | 394 |
| BglII | AGATCT | 1 cut(s) | 523 |
| BisI | GCNGC | 3 cut(s) | 354, 647, 818 |
| BlsI | GCNGC | 3 cut(s) | 355, 648, 819 |
| Bme1390I | CCNGG | 1 cut(s) | 562 |
| Bme18I | GGWCC | 2 cut(s) | 258, 361 |
| BmeT110I | CYCGRG | 1 cut(s) | 639 |
| BmgT120I | GGNCC | 5 cut(s) | 66, 258, 299, 361, 467 |
| BmiI | GGNNCC | 2 cut(s) | 309, 362 |
| BmrFI | CCNGG | 1 cut(s) | 562 |
| BmsI | GCATC | 2 cut(s) | 480, 658 |
| Bsa29I | ATCGAT | 1 cut(s) | 279 |
| BsaI | GGTCTC | 1 cut(s) | 712 |
| BsaJI | CCNNGG | 2 cut(s) | 6, 410 |
| BsaWI | WCCGGW | 2 cut(s) | 326, 363 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 184, 475, 615 |
| Bse118I | RCCGGY | 1 cut(s) | 363 |
| BseBI | CCWGG | 1 cut(s) | 562 |
| BseCI | ATCGAT | 1 cut(s) | 279 |
| BseDI | CCNNGG | 2 cut(s) | 6, 410 |
| BseGI | GGATG | 1 cut(s) | 469 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 184, 475, 615 |
| BseXI | GCAGC | 2 cut(s) | 658, 829 |
| BsgI | GTGCAG | 2 cut(s) | 269, 665 |
| Bsh1236I | CGCG | 2 cut(s) | 313, 346 |
| BshFI | GGCC | 4 cut(s) | 5, 68, 300, 468 |
| BshTI | ACCGGT | 1 cut(s) | 363 |
| BshVI | ATCGAT | 1 cut(s) | 279 |
| BsiHKCI | CYCGRG | 1 cut(s) | 639 |
| BsiSI | CCGG | 2 cut(s) | 327, 364 |
| BslFI | GGGAC | 1 cut(s) | 374 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 184, 475, 615 |
| BsmAI | GTCTC | 3 cut(s) | 113, 387, 712 |
| BsmFI | GGGAC | 1 cut(s) | 374 |
| BsmI | GAATGC | 1 cut(s) | 796 |
| BsnI | GGCC | 4 cut(s) | 5, 68, 300, 468 |
| Bso31I | GGTCTC | 1 cut(s) | 712 |
| BsoBI | CYCGRG | 1 cut(s) | 639 |
| Bsp143I | GATC | 5 cut(s) | 42, 151, 280, 385, 523 |
| Bsp19I | CCATGG | 1 cut(s) | 6 |
| BspACI | CCGC | 3 cut(s) | 294, 311, 353 |
| BspANI | GGCC | 4 cut(s) | 5, 68, 300, 468 |
| BspDI | ATCGAT | 1 cut(s) | 279 |
| BspFNI | CGCG | 2 cut(s) | 313, 346 |
| BspLI | GGNNCC | 2 cut(s) | 309, 362 |
| BspMI | ACCTGC | 1 cut(s) | 241 |
| BspPI | GGATC | 1 cut(s) | 50 |
| BspTNI | GGTCTC | 1 cut(s) | 712 |
| BsrFI | RCCGGY | 1 cut(s) | 363 |
| BssAI | RCCGGY | 1 cut(s) | 363 |
| BssECI | CCNNGG | 2 cut(s) | 6, 410 |
| BssMI | GATC | 5 cut(s) | 42, 151, 280, 385, 523 |
| BssT1I | CCWWGG | 2 cut(s) | 6, 410 |
| Bst2UI | CCWGG | 1 cut(s) | 562 |
| Bst4CI | ACNGT | 1 cut(s) | 452 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 379 |
| BstC8I | GCNNGC | 2 cut(s) | 219, 697 |
| BstDEI | CTNAG | 4 cut(s) | 23, 473, 584, 837 |
| BstDSI | CCRYGG | 1 cut(s) | 6 |
| BstF5I | GGATG | 1 cut(s) | 469 |
| BstFNI | CGCG | 2 cut(s) | 313, 346 |
| BstH2I | RGCGCY | 2 cut(s) | 167, 322 |
| BstHHI | GCGC | 3 cut(s) | 166, 321, 346 |
| BstKTI | GATC | 5 cut(s) | 45, 154, 283, 388, 526 |
| BstMAI | GTCTC | 3 cut(s) | 113, 387, 712 |
| BstMBI | GATC | 5 cut(s) | 42, 151, 280, 385, 523 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 350, 379 |
| BstNI | CCWGG | 1 cut(s) | 562 |
| BstSCI | CCNGG | 1 cut(s) | 560 |
| BstSFI | CTRYAG | 1 cut(s) | 689 |
| BstUI | CGCG | 2 cut(s) | 313, 346 |
| BstV1I | GCAGC | 2 cut(s) | 658, 829 |
| BstX2I | RGATCY | 2 cut(s) | 42, 523 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 13 |
| BstYI | RGATCY | 2 cut(s) | 42, 523 |
| Bsu15I | ATCGAT | 1 cut(s) | 279 |
| BsuI | GTATCC | 1 cut(s) | 394 |
| BsuRI | GGCC | 4 cut(s) | 5, 68, 300, 468 |
| BsuTUI | ATCGAT | 1 cut(s) | 279 |
| BtgI | CCRYGG | 1 cut(s) | 6 |
| BtsCI | GGATG | 1 cut(s) | 469 |
| BtsI | GCAGTG | 1 cut(s) | 404 |
| BtsIMutI | CAGTG | 2 cut(s) | 404, 457 |
| BveI | ACCTGC | 1 cut(s) | 241 |
| Cac8I | GCNNGC | 2 cut(s) | 219, 697 |
| CfoI | GCGC | 3 cut(s) | 166, 321, 346 |
| Cfr10I | RCCGGY | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 5 cut(s) | 66, 258, 299, 361, 467 |
| ClaI | ATCGAT | 1 cut(s) | 279 |
| CsiI | ACCWGGT | 1 cut(s) | 560 |
| Csp6I | GTAC | 1 cut(s) | 606 |
| CspAI | ACCGGT | 1 cut(s) | 363 |
| CviAII | CATG | 8 cut(s) | 7, 13, 369, 595, 635, 674, 764, 795 |
| CviQI | GTAC | 1 cut(s) | 606 |
| DdeI | CTNAG | 4 cut(s) | 23, 473, 584, 837 |
| DpnI | GATC | 5 cut(s) | 44, 153, 282, 387, 525 |
| DpnII | GATC | 5 cut(s) | 42, 151, 280, 385, 523 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 2 cut(s) | 6, 410 |
| Eco31I | GGTCTC | 1 cut(s) | 712 |
| Eco47I | GGWCC | 2 cut(s) | 258, 361 |
| Eco57I | CTGAAG | 1 cut(s) | 743 |
| Eco88I | CYCGRG | 1 cut(s) | 639 |
| EcoO109I | RGGNCCY | 1 cut(s) | 66 |
| EcoRI | GAATTC | 1 cut(s) | 568 |
| EcoRII | CCWGG | 1 cut(s) | 560 |
| EcoT14I | CCWWGG | 2 cut(s) | 6, 410 |
| EcoT22I | ATGCAT | 1 cut(s) | 796 |
| ErhI | CCWWGG | 2 cut(s) | 6, 410 |
| FaeI | CATG | 8 cut(s) | 10, 16, 372, 598, 638, 677, 767, 798 |
| FaqI | GGGAC | 1 cut(s) | 374 |
| FatI | CATG | 8 cut(s) | 6, 12, 368, 594, 634, 673, 763, 794 |
| FblI | GTMKAC | 1 cut(s) | 557 |
| Fnu4HI | GCNGC | 3 cut(s) | 354, 647, 818 |
| FokI | GGATG | 1 cut(s) | 476 |
| Fsp4HI | GCNGC | 3 cut(s) | 354, 647, 818 |
| FspBI | CTAG | 3 cut(s) | 167, 284, 357 |
| GlaI | GCGC | 3 cut(s) | 165, 320, 345 |
| GluI | GCNGC | 3 cut(s) | 354, 647, 818 |
| HaeII | RGCGCY | 2 cut(s) | 167, 322 |
| HaeIII | GGCC | 4 cut(s) | 5, 68, 300, 468 |
| HapII | CCGG | 2 cut(s) | 327, 364 |
| HhaI | GCGC | 3 cut(s) | 166, 321, 346 |
| Hin1II | CATG | 8 cut(s) | 10, 16, 372, 598, 638, 677, 767, 798 |
| Hin6I | GCGC | 3 cut(s) | 164, 319, 344 |
| HinP1I | GCGC | 3 cut(s) | 164, 319, 344 |
| HindIII | AAGCTT | 1 cut(s) | 507 |
| HinfI | GANTC | 3 cut(s) | 171, 330, 665 |
| HpaII | CCGG | 2 cut(s) | 327, 364 |
| HphI | GGTGA | 2 cut(s) | 779, 796 |
| Hpy166II | GTNNAC | 1 cut(s) | 558 |
| Hpy188I | TCNGA | 5 cut(s) | 235, 258, 574, 660, 670 |
| Hpy188III | TCNNGA | 3 cut(s) | 149, 284, 530 |
| Hpy8I | GTNNAC | 1 cut(s) | 558 |
| HpyAV | CCTTC | 3 cut(s) | 67, 271, 451 |
| HpyCH4III | ACNGT | 1 cut(s) | 452 |
| HpyCH4IV | ACGT | 1 cut(s) | 780 |
| HpyCH4V | TGCA | 4 cut(s) | 48, 250, 646, 794 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 350, 379 |
| HpyF3I | CTNAG | 4 cut(s) | 23, 473, 584, 837 |
| HpySE526I | ACGT | 1 cut(s) | 780 |
| Hsp92II | CATG | 8 cut(s) | 10, 16, 372, 598, 638, 677, 767, 798 |
| HspAI | GCGC | 3 cut(s) | 164, 319, 344 |
| Kzo9I | GATC | 5 cut(s) | 42, 151, 280, 385, 523 |
| Lsp1109I | GCAGC | 2 cut(s) | 658, 829 |
| LweI | GCATC | 2 cut(s) | 480, 658 |
| MabI | ACCWGGT | 1 cut(s) | 560 |
| MaeI | CTAG | 3 cut(s) | 167, 284, 357 |
| MaeII | ACGT | 1 cut(s) | 780 |
| MaeIII | GTNAC | 2 cut(s) | 662, 773 |
| MalI | GATC | 5 cut(s) | 44, 153, 282, 387, 525 |
| MboI | GATC | 5 cut(s) | 42, 151, 280, 385, 523 |
| MboII | GAAGA | 4 cut(s) | 152, 518, 644, 799 |
| MfeI | CAATTG | 1 cut(s) | 158 |
| MflI | RGATCY | 2 cut(s) | 42, 523 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 4 cut(s) | 31, 158, 374, 568 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 659 |
| MmeI | TCCRAC | 3 cut(s) | 8, 213, 570 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 796 |
| MroXI | GAANNNNTTC | 1 cut(s) | 144 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 80, 443 |
| MslI | CAYNNNNRTG | 1 cut(s) | 11 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 2 cut(s) | 327, 364 |
| MspR9I | CCNGG | 1 cut(s) | 562 |
| MunI | CAATTG | 1 cut(s) | 158 |
| Mva1269I | GAATGC | 1 cut(s) | 796 |
| MvaI | CCWGG | 1 cut(s) | 562 |
| MvnI | CGCG | 2 cut(s) | 313, 346 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 350, 379 |
| NcoI | CCATGG | 1 cut(s) | 6 |
| NdeII | GATC | 5 cut(s) | 42, 151, 280, 385, 523 |
| NlaIII | CATG | 8 cut(s) | 10, 16, 372, 598, 638, 677, 767, 798 |
| NlaIV | GGNNCC | 2 cut(s) | 309, 362 |
| NmuCI | GTSAC | 2 cut(s) | 662, 773 |
| NsiI | ATGCAT | 1 cut(s) | 796 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 490 |
| PctI | GAATGC | 1 cut(s) | 796 |
| PdmI | GAANNNNTTC | 1 cut(s) | 144 |
| PfeI | GAWTC | 2 cut(s) | 171, 330 |
| PflFI | GACNNNGTC | 1 cut(s) | 239 |
| PinAI | ACCGGT | 1 cut(s) | 363 |
| PkrI | GCNGC | 3 cut(s) | 355, 648, 819 |
| PleI | GAGTC | 1 cut(s) | 659 |
| PpsI | GAGTC | 1 cut(s) | 659 |
| Psp6I | CCWGG | 1 cut(s) | 560 |
| PspGI | CCWGG | 1 cut(s) | 560 |
| PspN4I | GGNNCC | 2 cut(s) | 309, 362 |
| PspPI | GGNCC | 5 cut(s) | 66, 258, 299, 361, 467 |
| PsuI | RGATCY | 2 cut(s) | 42, 523 |
| PsyI | GACNNNGTC | 1 cut(s) | 239 |
| RsaI | GTAC | 1 cut(s) | 607 |
| RsaNI | GTAC | 1 cut(s) | 606 |
| RseI | CAYNNNNRTG | 1 cut(s) | 11 |
| SaqAI | TTAA | 2 cut(s) | 80, 443 |
| SatI | GCNGC | 3 cut(s) | 354, 647, 818 |
| Sau3AI | GATC | 5 cut(s) | 42, 151, 280, 385, 523 |
| Sau96I | GGNCC | 5 cut(s) | 66, 258, 299, 361, 467 |
| SchI | GAGTC | 1 cut(s) | 659 |
| ScrFI | CCNGG | 1 cut(s) | 562 |
| SexAI | ACCWGGT | 1 cut(s) | 560 |
| SfaNI | GCATC | 2 cut(s) | 480, 658 |
| SfcI | CTRYAG | 1 cut(s) | 689 |
| SinI | GGWCC | 2 cut(s) | 258, 361 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 11 |
| Sse9I | AATT | 4 cut(s) | 31, 158, 374, 568 |
| SsiI | CCGC | 3 cut(s) | 294, 311, 353 |
| SspMI | CTAG | 3 cut(s) | 167, 284, 357 |
| StyD4I | CCNGG | 1 cut(s) | 560 |
| StyI | CCWWGG | 2 cut(s) | 6, 410 |
| TaaI | ACNGT | 1 cut(s) | 452 |
| TaiI | ACGT | 1 cut(s) | 783 |
| TaqI | TCGA | 3 cut(s) | 94, 279, 621 |
| TasI | AATT | 4 cut(s) | 31, 158, 374, 568 |
| TauI | GCSGC | 1 cut(s) | 356 |
| TfiI | GAWTC | 2 cut(s) | 171, 330 |
| Tru1I | TTAA | 2 cut(s) | 80, 443 |
| Tru9I | TTAA | 2 cut(s) | 80, 443 |
| TscAI | CASTG | 2 cut(s) | 411, 457 |
| TseFI | GTSAC | 2 cut(s) | 662, 773 |
| TseI | GCWGC | 2 cut(s) | 646, 817 |
| Tsp45I | GTSAC | 2 cut(s) | 662, 773 |
| TspDTI | ATGAA | 1 cut(s) | 450 |
| TspGWI | ACGGA | 1 cut(s) | 491 |
| TspRI | CASTG | 2 cut(s) | 411, 457 |
| Tth111I | GACNNNGTC | 1 cut(s) | 239 |
| VpaK11BI | GGWCC | 2 cut(s) | 258, 361 |
| XapI | RAATTY | 1 cut(s) | 568 |
| XbaI | TCTAGA | 1 cut(s) | 283 |
| XmiI | GTMKAC | 1 cut(s) | 557 |
| XmnI | GAANNNNTTC | 1 cut(s) | 144 |
| XspI | CTAG | 3 cut(s) | 167, 284, 357 |
| Zsp2I | ATGCAT | 1 cut(s) | 796 |