ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 317 |
| AciI | CCGC | 2 cut(s) | 524, 746 |
| AclWI | GGATC | 4 cut(s) | 12, 69, 231, 328 |
| AcoI | YGGCCR | 1 cut(s) | 338 |
| AcsI | RAATTY | 2 cut(s) | 430, 602 |
| AcuI | CTGAAG | 2 cut(s) | 86, 277 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 219, 273, 457 |
| AgsI | TTSAA | 1 cut(s) | 601 |
| AjiI | CACGTC | 1 cut(s) | 823 |
| AjnI | CCWGG | 2 cut(s) | 272, 363 |
| AluBI | AGCT | 5 cut(s) | 21, 254, 557, 656, 689 |
| AluI | AGCT | 5 cut(s) | 21, 254, 557, 656, 689 |
| Alw26I | GTCTC | 2 cut(s) | 210, 340 |
| AlwI | GGATC | 4 cut(s) | 12, 69, 231, 328 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 64, 709 |
| AoxI | GGCC | 2 cut(s) | 338, 581 |
| ApeKI | GCWGC | 2 cut(s) | 445, 619 |
| ApoI | RAATTY | 2 cut(s) | 430, 602 |
| AseI | ATTAAT | 1 cut(s) | 840 |
| AspLEI | GCGC | 1 cut(s) | 450 |
| AsuHPI | GGTGA | 3 cut(s) | 170, 510, 584 |
| AsuII | TTCGAA | 1 cut(s) | 606 |
| BbvI | GCAGC | 2 cut(s) | 432, 606 |
| BccI | CCATC | 1 cut(s) | 271 |
| BciT130I | CCWGG | 2 cut(s) | 274, 365 |
| BclI | TGATCA | 1 cut(s) | 532 |
| BcoDI | GTCTC | 2 cut(s) | 210, 340 |
| BfaI | CTAG | 3 cut(s) | 251, 558, 579 |
| BfuAI | ACCTGC | 1 cut(s) | 317 |
| BisI | GCNGC | 2 cut(s) | 446, 620 |
| BlpI | GCTNAGC | 1 cut(s) | 870 |
| BlsI | GCNGC | 2 cut(s) | 447, 621 |
| Bme1390I | CCNGG | 2 cut(s) | 274, 365 |
| BmgBI | CACGTC | 1 cut(s) | 823 |
| BmiI | GGNNCC | 2 cut(s) | 121, 567 |
| BmrFI | CCNGG | 2 cut(s) | 274, 365 |
| BmrI | ACTGGG | 1 cut(s) | 229 |
| BmsI | GCATC | 1 cut(s) | 142 |
| BmuI | ACTGGG | 1 cut(s) | 229 |
| BoxI | GACNNNNGTC | 1 cut(s) | 172 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 870 |
| Bpu14I | TTCGAA | 1 cut(s) | 606 |
| BsaAI | YACGTR | 1 cut(s) | 423 |
| BsaBI | GATNNNNATC | 2 cut(s) | 485, 531 |
| BsaJI | CCNNGG | 1 cut(s) | 272 |
| BsaWI | WCCGGW | 1 cut(s) | 212 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 219, 273, 457 |
| Bse1I | ACTGG | 1 cut(s) | 224 |
| Bse3DI | GCAATG | 2 cut(s) | 420, 822 |
| Bse8I | GATNNNNATC | 2 cut(s) | 485, 531 |
| BseBI | CCWGG | 2 cut(s) | 274, 365 |
| BseDI | CCNNGG | 1 cut(s) | 272 |
| BseGI | GGATG | 2 cut(s) | 16, 282 |
| BseJI | GATNNNNATC | 2 cut(s) | 485, 531 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 219, 273, 457 |
| BseMI | GCAATG | 2 cut(s) | 420, 822 |
| BseMII | CTCAG | 4 cut(s) | 71, 95, 789, 846 |
| BseNI | ACTGG | 1 cut(s) | 224 |
| BseRI | GAGGAG | 1 cut(s) | 872 |
| BseX3I | CGGCCG | 1 cut(s) | 338 |
| BseXI | GCAGC | 2 cut(s) | 432, 606 |
| Bsh1285I | CGRYCG | 1 cut(s) | 341 |
| BshFI | GGCC | 2 cut(s) | 340, 583 |
| BsiEI | CGRYCG | 1 cut(s) | 341 |
| BsiSI | CCGG | 3 cut(s) | 213, 337, 341 |
| BslFI | GGGAC | 2 cut(s) | 302, 720 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 219, 273, 457 |
| BsmAI | GTCTC | 2 cut(s) | 210, 340 |
| BsmFI | GGGAC | 2 cut(s) | 302, 720 |
| BsmI | GAATGC | 1 cut(s) | 871 |
| BsnI | GGCC | 2 cut(s) | 340, 583 |
| Bsp119I | TTCGAA | 1 cut(s) | 606 |
| Bsp143I | GATC | 6 cut(s) | 4, 61, 223, 333, 385, 532 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 870 |
| BspACI | CCGC | 2 cut(s) | 524, 746 |
| BspANI | GGCC | 2 cut(s) | 340, 583 |
| BspCNI | CTCAG | 4 cut(s) | 70, 94, 790, 847 |
| BspHI | TCATGA | 1 cut(s) | 645 |
| BspLI | GGNNCC | 2 cut(s) | 121, 567 |
| BspMI | ACCTGC | 1 cut(s) | 317 |
| BspPI | GGATC | 4 cut(s) | 12, 69, 231, 328 |
| BspT104I | TTCGAA | 1 cut(s) | 606 |
| BsrDI | GCAATG | 2 cut(s) | 420, 822 |
| BsrI | ACTGG | 1 cut(s) | 224 |
| BssECI | CCNNGG | 1 cut(s) | 272 |
| BssMI | GATC | 6 cut(s) | 4, 61, 223, 333, 385, 532 |
| Bst2UI | CCWGG | 2 cut(s) | 274, 365 |
| Bst4CI | ACNGT | 2 cut(s) | 596, 711 |
| BstBAI | YACGTR | 1 cut(s) | 423 |
| BstBI | TTCGAA | 1 cut(s) | 606 |
| BstC8I | GCNNGC | 2 cut(s) | 576, 748 |
| BstDEI | CTNAG | 6 cut(s) | 57, 81, 690, 798, 855, 870 |
| BstF5I | GGATG | 2 cut(s) | 16, 282 |
| BstHHI | GCGC | 1 cut(s) | 450 |
| BstKTI | GATC | 6 cut(s) | 7, 64, 226, 336, 388, 535 |
| BstMAI | GTCTC | 2 cut(s) | 210, 340 |
| BstMBI | GATC | 6 cut(s) | 4, 61, 223, 333, 385, 532 |
| BstMCI | CGRYCG | 1 cut(s) | 341 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 27, 580 |
| BstNI | CCWGG | 2 cut(s) | 274, 365 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 172 |
| BstSCI | CCNGG | 2 cut(s) | 272, 363 |
| BstV1I | GCAGC | 2 cut(s) | 432, 606 |
| BstX2I | RGATCY | 2 cut(s) | 4, 61 |
| BstYI | RGATCY | 2 cut(s) | 4, 61 |
| BstZI | CGGCCG | 1 cut(s) | 338 |
| BsuRI | GGCC | 2 cut(s) | 340, 583 |
| BtrI | CACGTC | 1 cut(s) | 823 |
| BtsCI | GGATG | 2 cut(s) | 16, 282 |
| BveI | ACCTGC | 1 cut(s) | 317 |
| Cac8I | GCNNGC | 2 cut(s) | 576, 748 |
| CaiI | CAGNNNCTG | 2 cut(s) | 64, 709 |
| CciI | TCATGA | 1 cut(s) | 645 |
| CfoI | GCGC | 1 cut(s) | 450 |
| CseI | GACGC | 1 cut(s) | 821 |
| CviAII | CATG | 6 cut(s) | 245, 442, 497, 536, 646, 734 |
| DdeI | CTNAG | 6 cut(s) | 57, 81, 690, 798, 855, 870 |
| DpnI | GATC | 6 cut(s) | 6, 63, 225, 335, 387, 534 |
| DpnII | GATC | 6 cut(s) | 4, 61, 223, 333, 385, 532 |
| EaeI | YGGCCR | 1 cut(s) | 338 |
| EagI | CGGCCG | 1 cut(s) | 338 |
| EclXI | CGGCCG | 1 cut(s) | 338 |
| Eco147I | AGGCCT | 1 cut(s) | 583 |
| Eco52I | CGGCCG | 1 cut(s) | 338 |
| Eco57I | CTGAAG | 2 cut(s) | 86, 277 |
| EcoRI | GAATTC | 1 cut(s) | 430 |
| EcoRII | CCWGG | 2 cut(s) | 272, 363 |
| FaeI | CATG | 6 cut(s) | 248, 445, 500, 539, 649, 737 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 683, 715 |
| FaqI | GGGAC | 2 cut(s) | 302, 720 |
| FatI | CATG | 6 cut(s) | 244, 441, 496, 535, 645, 733 |
| FauI | CCCGC | 1 cut(s) | 739 |
| FbaI | TGATCA | 1 cut(s) | 532 |
| Fnu4HI | GCNGC | 2 cut(s) | 446, 620 |
| FokI | GGATG | 2 cut(s) | 23, 289 |
| Fsp4HI | GCNGC | 2 cut(s) | 446, 620 |
| FspBI | CTAG | 3 cut(s) | 251, 558, 579 |
| GlaI | GCGC | 1 cut(s) | 449 |
| GluI | GCNGC | 2 cut(s) | 446, 620 |
| HaeIII | GGCC | 2 cut(s) | 340, 583 |
| HapII | CCGG | 3 cut(s) | 213, 337, 341 |
| HgaI | GACGC | 1 cut(s) | 821 |
| HhaI | GCGC | 1 cut(s) | 450 |
| Hin1II | CATG | 6 cut(s) | 248, 445, 500, 539, 649, 737 |
| Hin6I | GCGC | 1 cut(s) | 448 |
| HinP1I | GCGC | 1 cut(s) | 448 |
| HincII | GTYRAC | 2 cut(s) | 805, 811 |
| HindII | GTYRAC | 2 cut(s) | 805, 811 |
| HindIII | AAGCTT | 1 cut(s) | 654 |
| HinfI | GANTC | 8 cut(s) | 85, 161, 168, 263, 301, 527, 642, 826 |
| HpaII | CCGG | 3 cut(s) | 213, 337, 341 |
| HphI | GGTGA | 3 cut(s) | 170, 510, 584 |
| Hpy166II | GTNNAC | 2 cut(s) | 805, 811 |
| Hpy188I | TCNGA | 7 cut(s) | 66, 84, 114, 333, 436, 532, 799 |
| Hpy188III | TCNNGA | 6 cut(s) | 8, 59, 165, 392, 646, 675 |
| Hpy8I | GTNNAC | 2 cut(s) | 805, 811 |
| HpyAV | CCTTC | 3 cut(s) | 61, 278, 643 |
| HpyCH4III | ACNGT | 2 cut(s) | 596, 711 |
| HpyCH4IV | ACGT | 4 cut(s) | 396, 422, 807, 822 |
| HpyCH4V | TGCA | 6 cut(s) | 30, 42, 326, 468, 622, 703 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 27, 580 |
| HpyF3I | CTNAG | 6 cut(s) | 57, 81, 690, 798, 855, 870 |
| HpySE526I | ACGT | 4 cut(s) | 396, 422, 807, 822 |
| Hsp92II | CATG | 6 cut(s) | 248, 445, 500, 539, 649, 737 |
| HspAI | GCGC | 1 cut(s) | 448 |
| Ksp22I | TGATCA | 1 cut(s) | 532 |
| Kzo9I | GATC | 6 cut(s) | 4, 61, 223, 333, 385, 532 |
| LmnI | GCTCC | 1 cut(s) | 410 |
| Lsp1109I | GCAGC | 2 cut(s) | 432, 606 |
| LweI | GCATC | 1 cut(s) | 142 |
| MaeI | CTAG | 3 cut(s) | 251, 558, 579 |
| MaeII | ACGT | 4 cut(s) | 396, 422, 807, 822 |
| MaeIII | GTNAC | 3 cut(s) | 590, 823, 850 |
| MalI | GATC | 6 cut(s) | 6, 63, 225, 335, 387, 534 |
| MboI | GATC | 6 cut(s) | 4, 61, 223, 333, 385, 532 |
| MboII | GAAGA | 3 cut(s) | 331, 380, 749 |
| MflI | RGATCY | 2 cut(s) | 4, 61 |
| MluCI | AATT | 9 cut(s) | 25, 95, 108, 282, 430, 602, 727, 762, 837 |
| MlyI | GAGTC | 3 cut(s) | 162, 651, 820 |
| MseI | TTAA | 4 cut(s) | 17, 206, 492, 840 |
| MslI | CAYNNNNRTG | 1 cut(s) | 738 |
| MspA1I | CMGCKG | 1 cut(s) | 524 |
| MspI | CCGG | 3 cut(s) | 213, 337, 341 |
| MspR9I | CCNGG | 2 cut(s) | 274, 365 |
| Mva1269I | GAATGC | 1 cut(s) | 871 |
| MvaI | CCWGG | 2 cut(s) | 274, 365 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 27, 580 |
| NdeII | GATC | 6 cut(s) | 4, 61, 223, 333, 385, 532 |
| NlaIII | CATG | 6 cut(s) | 248, 445, 500, 539, 649, 737 |
| NlaIV | GGNNCC | 2 cut(s) | 121, 567 |
| NmuCI | GTSAC | 2 cut(s) | 590, 823 |
| NspV | TTCGAA | 1 cut(s) | 606 |
| PagI | TCATGA | 1 cut(s) | 645 |
| PceI | AGGCCT | 1 cut(s) | 583 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 819 |
| PctI | GAATGC | 1 cut(s) | 871 |
| PfeI | GAWTC | 5 cut(s) | 85, 161, 263, 301, 527 |
| PfoI | TCCNGGA | 1 cut(s) | 363 |
| PkrI | GCNGC | 2 cut(s) | 447, 621 |
| PleI | GAGTC | 3 cut(s) | 162, 650, 820 |
| PpsI | GAGTC | 3 cut(s) | 162, 650, 820 |
| Ppu21I | YACGTR | 1 cut(s) | 423 |
| PshAI | GACNNNNGTC | 1 cut(s) | 172 |
| PshBI | ATTAAT | 1 cut(s) | 840 |
| Psp6I | CCWGG | 2 cut(s) | 272, 363 |
| PspGI | CCWGG | 2 cut(s) | 272, 363 |
| PspN4I | GGNNCC | 2 cut(s) | 121, 567 |
| PstNI | CAGNNNCTG | 2 cut(s) | 64, 709 |
| PsuI | RGATCY | 2 cut(s) | 4, 61 |
| RseI | CAYNNNNRTG | 1 cut(s) | 738 |
| SaqAI | TTAA | 4 cut(s) | 17, 206, 492, 840 |
| SatI | GCNGC | 2 cut(s) | 446, 620 |
| Sau3AI | GATC | 6 cut(s) | 4, 61, 223, 333, 385, 532 |
| SchI | GAGTC | 3 cut(s) | 162, 651, 820 |
| ScrFI | CCNGG | 2 cut(s) | 274, 365 |
| SfaNI | GCATC | 1 cut(s) | 142 |
| SfuI | TTCGAA | 1 cut(s) | 606 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 738 |
| Sse9I | AATT | 9 cut(s) | 25, 95, 108, 282, 430, 602, 727, 762, 837 |
| SseBI | AGGCCT | 1 cut(s) | 583 |
| SsiI | CCGC | 2 cut(s) | 524, 746 |
| SspMI | CTAG | 3 cut(s) | 251, 558, 579 |
| StuI | AGGCCT | 1 cut(s) | 583 |
| StyD4I | CCNGG | 2 cut(s) | 272, 363 |
| TaaI | ACNGT | 2 cut(s) | 596, 711 |
| TaiI | ACGT | 4 cut(s) | 399, 425, 810, 825 |
| TaqI | TCGA | 2 cut(s) | 606, 790 |
| TasI | AATT | 9 cut(s) | 25, 95, 108, 282, 430, 602, 727, 762, 837 |
| TfiI | GAWTC | 5 cut(s) | 85, 161, 263, 301, 527 |
| Tru1I | TTAA | 4 cut(s) | 17, 206, 492, 840 |
| Tru9I | TTAA | 4 cut(s) | 17, 206, 492, 840 |
| TseFI | GTSAC | 2 cut(s) | 590, 823 |
| TseI | GCWGC | 2 cut(s) | 445, 619 |
| Tsp45I | GTSAC | 2 cut(s) | 590, 823 |
| TspDTI | ATGAA | 5 cut(s) | 500, 662, 750, 756, 878 |
| VspI | ATTAAT | 1 cut(s) | 840 |
| XapI | RAATTY | 2 cut(s) | 430, 602 |
| XspI | CTAG | 3 cut(s) | 251, 558, 579 |