ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 759 |
| AciI | CCGC | 1 cut(s) | 523 |
| AclI | AACGTT | 1 cut(s) | 88 |
| AclWI | GGATC | 4 cut(s) | 117, 255, 657, 762 |
| AcsI | RAATTY | 2 cut(s) | 292, 464 |
| AcyI | GRCGYC | 1 cut(s) | 760 |
| AfaI | GTAC | 2 cut(s) | 424, 483 |
| AgsI | TTSAA | 4 cut(s) | 169, 463, 470, 728 |
| AjnI | CCWGG | 2 cut(s) | 284, 855 |
| AluBI | AGCT | 5 cut(s) | 437, 473, 628, 712, 827 |
| AluI | AGCT | 5 cut(s) | 437, 473, 628, 712, 827 |
| Alw21I | GWGCWC | 1 cut(s) | 34 |
| Alw26I | GTCTC | 1 cut(s) | 789 |
| AlwI | GGATC | 4 cut(s) | 117, 255, 657, 762 |
| AoxI | GGCC | 2 cut(s) | 443, 859 |
| ApeKI | GCWGC | 1 cut(s) | 437 |
| ApoI | RAATTY | 2 cut(s) | 292, 464 |
| AspLEI | GCGC | 1 cut(s) | 762 |
| AspS9I | GGNCC | 3 cut(s) | 272, 427, 859 |
| AsuC2I | CCSGG | 3 cut(s) | 107, 227, 554 |
| AsuHPI | GGTGA | 2 cut(s) | 89, 365 |
| AsuII | TTCGAA | 1 cut(s) | 297 |
| AvaII | GGWCC | 2 cut(s) | 272, 427 |
| BanI | GGYRCC | 1 cut(s) | 759 |
| BbsI | GAAGAC | 1 cut(s) | 710 |
| Bbv12I | GWGCWC | 1 cut(s) | 34 |
| BbvI | GCAGC | 1 cut(s) | 424 |
| BccI | CCATC | 3 cut(s) | 271, 343, 709 |
| BciT130I | CCWGG | 2 cut(s) | 286, 857 |
| BclI | TGATCA | 1 cut(s) | 79 |
| BcnI | CCSGG | 3 cut(s) | 107, 227, 554 |
| BcoDI | GTCTC | 1 cut(s) | 789 |
| BfaI | CTAG | 3 cut(s) | 420, 441, 900 |
| BfmI | CTRYAG | 1 cut(s) | 432 |
| BfoI | RGCGCY | 1 cut(s) | 763 |
| BisI | GCNGC | 1 cut(s) | 438 |
| BlsI | GCNGC | 1 cut(s) | 439 |
| Bme1390I | CCNGG | 5 cut(s) | 107, 227, 286, 554, 857 |
| Bme18I | GGWCC | 2 cut(s) | 272, 427 |
| BmgT120I | GGNCC | 3 cut(s) | 272, 427, 859 |
| BmiI | GGNNCC | 2 cut(s) | 429, 761 |
| BmrFI | CCNGG | 5 cut(s) | 107, 227, 286, 554, 857 |
| BmsI | GCATC | 4 cut(s) | 106, 220, 624, 886 |
| BpiI | GAAGAC | 1 cut(s) | 710 |
| BpmI | CTGGAG | 3 cut(s) | 224, 614, 839 |
| Bpu10I | CCTNAGC | 1 cut(s) | 413 |
| Bpu14I | TTCGAA | 1 cut(s) | 297 |
| BpuMI | CCSGG | 3 cut(s) | 107, 227, 554 |
| Bsa29I | ATCGAT | 1 cut(s) | 652 |
| BsaHI | GRCGYC | 1 cut(s) | 760 |
| BsaI | GGTCTC | 1 cut(s) | 789 |
| BsaJI | CCNNGG | 3 cut(s) | 134, 268, 856 |
| BsaWI | WCCGGW | 1 cut(s) | 798 |
| Bse1I | ACTGG | 2 cut(s) | 55, 79 |
| BseBI | CCWGG | 2 cut(s) | 286, 857 |
| BseCI | ATCGAT | 1 cut(s) | 652 |
| BseDI | CCNNGG | 3 cut(s) | 134, 268, 856 |
| BseGI | GGATG | 2 cut(s) | 235, 898 |
| BseMII | CTCAG | 3 cut(s) | 399, 405, 483 |
| BseNI | ACTGG | 2 cut(s) | 55, 79 |
| BseRI | GAGGAG | 2 cut(s) | 701, 761 |
| BseXI | GCAGC | 1 cut(s) | 424 |
| BseYI | CCCAGC | 1 cut(s) | 500 |
| BshFI | GGCC | 2 cut(s) | 445, 861 |
| BshNI | GGYRCC | 1 cut(s) | 759 |
| BshVI | ATCGAT | 1 cut(s) | 652 |
| BsiHKAI | GWGCWC | 1 cut(s) | 34 |
| BsiSI | CCGG | 4 cut(s) | 106, 226, 553, 799 |
| BslFI | GGGAC | 4 cut(s) | 164, 413, 553, 891 |
| BsmAI | GTCTC | 1 cut(s) | 789 |
| BsmFI | GGGAC | 4 cut(s) | 164, 413, 553, 891 |
| BsnI | GGCC | 2 cut(s) | 445, 861 |
| Bso31I | GGTCTC | 1 cut(s) | 789 |
| Bsp119I | TTCGAA | 1 cut(s) | 297 |
| Bsp1286I | GDGCHC | 1 cut(s) | 34 |
| Bsp143I | GATC | 7 cut(s) | 79, 109, 247, 346, 394, 649, 767 |
| Bsp19I | CCATGG | 2 cut(s) | 134, 268 |
| BspACI | CCGC | 1 cut(s) | 523 |
| BspANI | GGCC | 2 cut(s) | 445, 861 |
| BspCNI | CTCAG | 3 cut(s) | 398, 404, 484 |
| BspDI | ATCGAT | 1 cut(s) | 652 |
| BspHI | TCATGA | 1 cut(s) | 82 |
| BspLI | GGNNCC | 2 cut(s) | 429, 761 |
| BspPI | GGATC | 4 cut(s) | 117, 255, 657, 762 |
| BspT104I | TTCGAA | 1 cut(s) | 297 |
| BspT107I | GGYRCC | 1 cut(s) | 759 |
| BspTNI | GGTCTC | 1 cut(s) | 789 |
| BsrI | ACTGG | 2 cut(s) | 55, 79 |
| BssECI | CCNNGG | 3 cut(s) | 134, 268, 856 |
| BssMI | GATC | 7 cut(s) | 79, 109, 247, 346, 394, 649, 767 |
| BssNI | GRCGYC | 1 cut(s) | 760 |
| BssT1I | CCWWGG | 2 cut(s) | 134, 268 |
| Bst2UI | CCWGG | 2 cut(s) | 286, 857 |
| Bst4CI | ACNGT | 5 cut(s) | 306, 369, 427, 663, 882 |
| BstACI | GRCGYC | 1 cut(s) | 760 |
| BstBI | TTCGAA | 1 cut(s) | 297 |
| BstDEI | CTNAG | 4 cut(s) | 385, 391, 413, 492 |
| BstDSI | CCRYGG | 2 cut(s) | 134, 268 |
| BstF5I | GGATG | 2 cut(s) | 235, 898 |
| BstH2I | RGCGCY | 1 cut(s) | 763 |
| BstHHI | GCGC | 1 cut(s) | 762 |
| BstKTI | GATC | 7 cut(s) | 82, 112, 250, 349, 397, 652, 770 |
| BstMAI | GTCTC | 1 cut(s) | 789 |
| BstMBI | GATC | 7 cut(s) | 79, 109, 247, 346, 394, 649, 767 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 634 |
| BstNI | CCWGG | 2 cut(s) | 286, 857 |
| BstSCI | CCNGG | 5 cut(s) | 105, 225, 284, 552, 855 |
| BstSFI | CTRYAG | 1 cut(s) | 432 |
| BstV1I | GCAGC | 1 cut(s) | 424 |
| BstV2I | GAAGAC | 1 cut(s) | 710 |
| BstX2I | RGATCY | 2 cut(s) | 109, 247 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 638 |
| BstYI | RGATCY | 2 cut(s) | 109, 247 |
| Bsu15I | ATCGAT | 1 cut(s) | 652 |
| BsuRI | GGCC | 2 cut(s) | 445, 861 |
| BsuTUI | ATCGAT | 1 cut(s) | 652 |
| BtgI | CCRYGG | 2 cut(s) | 134, 268 |
| BtgZI | GCGATG | 1 cut(s) | 440 |
| BtsCI | GGATG | 2 cut(s) | 235, 898 |
| BtsIMutI | CAGTG | 1 cut(s) | 887 |
| CciI | TCATGA | 1 cut(s) | 82 |
| CfoI | GCGC | 1 cut(s) | 762 |
| Cfr13I | GGNCC | 3 cut(s) | 272, 427, 859 |
| ClaI | ATCGAT | 1 cut(s) | 652 |
| CseI | GACGC | 2 cut(s) | 14, 524 |
| CsiI | ACCWGGT | 1 cut(s) | 284 |
| Csp6I | GTAC | 2 cut(s) | 423, 482 |
| CviAII | CATG | 5 cut(s) | 83, 93, 135, 269, 519 |
| CviQI | GTAC | 2 cut(s) | 423, 482 |
| DdeI | CTNAG | 4 cut(s) | 385, 391, 413, 492 |
| DinI | GGCGCC | 1 cut(s) | 761 |
| DpnI | GATC | 7 cut(s) | 81, 111, 249, 348, 396, 651, 769 |
| DpnII | GATC | 7 cut(s) | 79, 109, 247, 346, 394, 649, 767 |
| EciI | GGCGGA | 1 cut(s) | 538 |
| Eco130I | CCWWGG | 2 cut(s) | 134, 268 |
| Eco31I | GGTCTC | 1 cut(s) | 789 |
| Eco47I | GGWCC | 2 cut(s) | 272, 427 |
| EcoO109I | RGGNCCY | 1 cut(s) | 859 |
| EcoRII | CCWGG | 2 cut(s) | 284, 855 |
| EcoT14I | CCWWGG | 2 cut(s) | 134, 268 |
| EgeI | GGCGCC | 1 cut(s) | 761 |
| EheI | GGCGCC | 1 cut(s) | 761 |
| ErhI | CCWWGG | 2 cut(s) | 134, 268 |
| FaeI | CATG | 5 cut(s) | 86, 96, 138, 272, 522 |
| FaqI | GGGAC | 4 cut(s) | 164, 413, 553, 891 |
| FatI | CATG | 5 cut(s) | 82, 92, 134, 268, 518 |
| FauNDI | CATATG | 2 cut(s) | 546, 576 |
| FbaI | TGATCA | 1 cut(s) | 79 |
| Fnu4HI | GCNGC | 1 cut(s) | 438 |
| FokI | GGATG | 2 cut(s) | 242, 905 |
| Fsp4HI | GCNGC | 1 cut(s) | 438 |
| FspBI | CTAG | 3 cut(s) | 420, 441, 900 |
| GlaI | GCGC | 1 cut(s) | 761 |
| GluI | GCNGC | 1 cut(s) | 438 |
| GsaI | CCCAGC | 1 cut(s) | 504 |
| GsuI | CTGGAG | 3 cut(s) | 224, 614, 839 |
| HaeII | RGCGCY | 1 cut(s) | 763 |
| HaeIII | GGCC | 2 cut(s) | 445, 861 |
| HapII | CCGG | 4 cut(s) | 106, 226, 553, 799 |
| HgaI | GACGC | 2 cut(s) | 14, 524 |
| HhaI | GCGC | 1 cut(s) | 762 |
| Hin1I | GRCGYC | 1 cut(s) | 760 |
| Hin1II | CATG | 5 cut(s) | 86, 96, 138, 272, 522 |
| Hin6I | GCGC | 1 cut(s) | 760 |
| HinP1I | GCGC | 1 cut(s) | 760 |
| HincII | GTYRAC | 1 cut(s) | 48 |
| HindII | GTYRAC | 1 cut(s) | 48 |
| HindIII | AAGCTT | 1 cut(s) | 471 |
| HinfI | GANTC | 6 cut(s) | 23, 125, 389, 541, 691, 749 |
| HpaII | CCGG | 4 cut(s) | 106, 226, 553, 799 |
| HphI | GGTGA | 2 cut(s) | 89, 365 |
| Hpy166II | GTNNAC | 1 cut(s) | 48 |
| Hpy188I | TCNGA | 5 cut(s) | 276, 388, 394, 493, 696 |
| Hpy188III | TCNNGA | 4 cut(s) | 83, 203, 254, 631 |
| Hpy8I | GTNNAC | 1 cut(s) | 48 |
| HpyAV | CCTTC | 3 cut(s) | 390, 691, 785 |
| HpyCH4III | ACNGT | 5 cut(s) | 306, 369, 427, 663, 882 |
| HpyCH4IV | ACGT | 2 cut(s) | 88, 399 |
| HpyCH4V | TGCA | 2 cut(s) | 68, 580 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 634 |
| HpyF3I | CTNAG | 4 cut(s) | 385, 391, 413, 492 |
| HpySE526I | ACGT | 2 cut(s) | 88, 399 |
| Hsp92I | GRCGYC | 1 cut(s) | 760 |
| Hsp92II | CATG | 5 cut(s) | 86, 96, 138, 272, 522 |
| HspAI | GCGC | 1 cut(s) | 760 |
| KasI | GGCGCC | 1 cut(s) | 759 |
| Ksp22I | TGATCA | 1 cut(s) | 79 |
| Kzo9I | GATC | 7 cut(s) | 79, 109, 247, 346, 394, 649, 767 |
| LmnI | GCTCC | 3 cut(s) | 205, 633, 858 |
| Lsp1109I | GCAGC | 1 cut(s) | 424 |
| LweI | GCATC | 4 cut(s) | 106, 220, 624, 886 |
| MabI | ACCWGGT | 1 cut(s) | 284 |
| MaeI | CTAG | 3 cut(s) | 420, 441, 900 |
| MaeII | ACGT | 2 cut(s) | 88, 399 |
| MaeIII | GTNAC | 2 cut(s) | 775, 916 |
| MalI | GATC | 7 cut(s) | 81, 111, 249, 348, 396, 651, 769 |
| MboI | GATC | 7 cut(s) | 79, 109, 247, 346, 394, 649, 767 |
| MboII | GAAGA | 6 cut(s) | 193, 242, 574, 577, 715, 856 |
| MflI | RGATCY | 2 cut(s) | 109, 247 |
| MhlI | GDGCHC | 1 cut(s) | 34 |
| MluCI | AATT | 3 cut(s) | 194, 292, 464 |
| Mly113I | GGCGCC | 1 cut(s) | 760 |
| MlyI | GAGTC | 4 cut(s) | 119, 383, 535, 758 |
| MmeI | TCCRAC | 1 cut(s) | 294 |
| MseI | TTAA | 2 cut(s) | 156, 308 |
| MspI | CCGG | 4 cut(s) | 106, 226, 553, 799 |
| MspR9I | CCNGG | 5 cut(s) | 107, 227, 286, 554, 857 |
| MvaI | CCWGG | 2 cut(s) | 286, 857 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 634 |
| NarI | GGCGCC | 1 cut(s) | 760 |
| NciI | CCSGG | 3 cut(s) | 107, 227, 554 |
| NcoI | CCATGG | 2 cut(s) | 134, 268 |
| NdeI | CATATG | 2 cut(s) | 546, 576 |
| NdeII | GATC | 7 cut(s) | 79, 109, 247, 346, 394, 649, 767 |
| NlaIII | CATG | 5 cut(s) | 86, 96, 138, 272, 522 |
| NlaIV | GGNNCC | 2 cut(s) | 429, 761 |
| NspV | TTCGAA | 1 cut(s) | 297 |
| PagI | TCATGA | 1 cut(s) | 82 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 205 |
| PfeI | GAWTC | 2 cut(s) | 23, 691 |
| PfoI | TCCNGGA | 2 cut(s) | 105, 225 |
| PkrI | GCNGC | 1 cut(s) | 439 |
| PleI | GAGTC | 4 cut(s) | 119, 383, 535, 757 |
| PluTI | GGCGCC | 1 cut(s) | 763 |
| PpsI | GAGTC | 4 cut(s) | 119, 383, 535, 757 |
| Psp1406I | AACGTT | 1 cut(s) | 88 |
| Psp6I | CCWGG | 2 cut(s) | 284, 855 |
| PspFI | CCCAGC | 1 cut(s) | 500 |
| PspGI | CCWGG | 2 cut(s) | 284, 855 |
| PspN4I | GGNNCC | 2 cut(s) | 429, 761 |
| PspPI | GGNCC | 3 cut(s) | 272, 427, 859 |
| PsuI | RGATCY | 2 cut(s) | 109, 247 |
| RsaI | GTAC | 2 cut(s) | 424, 483 |
| RsaNI | GTAC | 2 cut(s) | 423, 482 |
| SaqAI | TTAA | 2 cut(s) | 156, 308 |
| SatI | GCNGC | 1 cut(s) | 438 |
| Sau3AI | GATC | 7 cut(s) | 79, 109, 247, 346, 394, 649, 767 |
| Sau96I | GGNCC | 3 cut(s) | 272, 427, 859 |
| SchI | GAGTC | 4 cut(s) | 119, 383, 535, 758 |
| ScrFI | CCNGG | 5 cut(s) | 107, 227, 286, 554, 857 |
| SduI | GDGCHC | 1 cut(s) | 34 |
| SexAI | ACCWGGT | 1 cut(s) | 284 |
| SfaNI | GCATC | 4 cut(s) | 106, 220, 624, 886 |
| SfcI | CTRYAG | 1 cut(s) | 432 |
| SfoI | GGCGCC | 1 cut(s) | 761 |
| SfuI | TTCGAA | 1 cut(s) | 297 |
| SinI | GGWCC | 2 cut(s) | 272, 427 |
| Sse9I | AATT | 3 cut(s) | 194, 292, 464 |
| SsiI | CCGC | 1 cut(s) | 523 |
| SspDI | GGCGCC | 1 cut(s) | 759 |
| SspMI | CTAG | 3 cut(s) | 420, 441, 900 |
| StyD4I | CCNGG | 5 cut(s) | 105, 225, 284, 552, 855 |
| StyI | CCWWGG | 2 cut(s) | 134, 268 |
| TaaI | ACNGT | 5 cut(s) | 306, 369, 427, 663, 882 |
| TaiI | ACGT | 2 cut(s) | 91, 402 |
| TaqI | TCGA | 4 cut(s) | 128, 297, 345, 652 |
| TasI | AATT | 3 cut(s) | 194, 292, 464 |
| TfiI | GAWTC | 2 cut(s) | 23, 691 |
| Tru1I | TTAA | 2 cut(s) | 156, 308 |
| Tru9I | TTAA | 2 cut(s) | 156, 308 |
| TscAI | CASTG | 1 cut(s) | 887 |
| TseI | GCWGC | 1 cut(s) | 437 |
| TspDTI | ATGAA | 3 cut(s) | 81, 99, 443 |
| TspGWI | ACGGA | 1 cut(s) | 803 |
| TspRI | CASTG | 1 cut(s) | 887 |
| VpaK11BI | GGWCC | 2 cut(s) | 272, 427 |
| XapI | RAATTY | 2 cut(s) | 292, 464 |
| XspI | CTAG | 3 cut(s) | 420, 441, 900 |