Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1400 |
| AciI | CCGC | 4 cut(s) | 299, 963, 1404, 1455 |
| AclWI | GGATC | 1 cut(s) | 176 |
| AcsI | RAATTY | 1 cut(s) | 883 |
| AfaI | GTAC | 6 cut(s) | 535, 611, 823, 1149, 1426, 1450 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 24 |
| AjnI | CCWGG | 4 cut(s) | 133, 906, 1245, 1476 |
| AleI | CACNNNNGTG | 1 cut(s) | 1437 |
| AluBI | AGCT | 6 cut(s) | 377, 853, 1042, 1347, 1381, 1592 |
| AluI | AGCT | 6 cut(s) | 377, 853, 1042, 1347, 1381, 1592 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| Alw26I | GTCTC | 5 cut(s) | 29, 521, 626, 926, 1201 |
| AlwI | GGATC | 1 cut(s) | 176 |
| AoxI | GGCC | 3 cut(s) | 300, 1265, 1605 |
| ApoI | RAATTY | 1 cut(s) | 883 |
| AseI | ATTAAT | 1 cut(s) | 1787 |
| AspLEI | GCGC | 3 cut(s) | 428, 758, 1236 |
| AspS9I | GGNCC | 5 cut(s) | 131, 1265, 1410, 1457, 1605 |
| AsuHPI | GGTGA | 2 cut(s) | 727, 1144 |
| AvaII | GGWCC | 3 cut(s) | 131, 1410, 1457 |
| BanI | GGYRCC | 1 cut(s) | 1400 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BccI | CCATC | 4 cut(s) | 17, 404, 944, 1123 |
| BceAI | ACGGC | 2 cut(s) | 500, 1322 |
| BciT130I | CCWGG | 4 cut(s) | 135, 908, 1247, 1478 |
| BclI | TGATCA | 3 cut(s) | 688, 1134, 1429 |
| BcoDI | GTCTC | 5 cut(s) | 29, 521, 626, 926, 1201 |
| BfaI | CTAG | 1 cut(s) | 1511 |
| BfmI | CTRYAG | 1 cut(s) | 1001 |
| BglII | AGATCT | 1 cut(s) | 283 |
| BisI | GCNGC | 2 cut(s) | 300, 964 |
| BlsI | GCNGC | 2 cut(s) | 301, 965 |
| Bme1390I | CCNGG | 4 cut(s) | 135, 908, 1247, 1478 |
| Bme18I | GGWCC | 3 cut(s) | 131, 1410, 1457 |
| BmgT120I | GGNCC | 5 cut(s) | 131, 1265, 1410, 1457, 1605 |
| BmiI | GGNNCC | 5 cut(s) | 601, 912, 1368, 1402, 1534 |
| BmrFI | CCNGG | 4 cut(s) | 135, 908, 1247, 1478 |
| BmrI | ACTGGG | 2 cut(s) | 1205, 1333 |
| BmsI | GCATC | 3 cut(s) | 38, 130, 1050 |
| BmuI | ACTGGG | 2 cut(s) | 1205, 1333 |
| BpmI | CTGGAG | 2 cut(s) | 929, 1499 |
| BsaBI | GATNNNNATC | 2 cut(s) | 60, 1133 |
| BsaI | GGTCTC | 1 cut(s) | 926 |
| BsaJI | CCNNGG | 2 cut(s) | 134, 482 |
| BsaWI | WCCGGW | 1 cut(s) | 818 |
| BsaXI | ACNNNNNCTCC | 7 cut(s) | 26, 29, 56, 115, 145, 1650, 1680 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 24 |
| Bse1I | ACTGG | 4 cut(s) | 535, 1211, 1328, 1765 |
| Bse3DI | GCAATG | 2 cut(s) | 866, 1749 |
| Bse8I | GATNNNNATC | 2 cut(s) | 60, 1133 |
| BseBI | CCWGG | 4 cut(s) | 135, 908, 1247, 1478 |
| BseDI | CCNNGG | 2 cut(s) | 134, 482 |
| BseGI | GGATG | 5 cut(s) | 145, 258, 396, 576, 677 |
| BseJI | GATNNNNATC | 2 cut(s) | 60, 1133 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 24 |
| BseMI | GCAATG | 2 cut(s) | 866, 1749 |
| BseNI | ACTGG | 4 cut(s) | 535, 1211, 1328, 1765 |
| BseYI | CCCAGC | 1 cut(s) | 1764 |
| BshFI | GGCC | 3 cut(s) | 302, 1267, 1607 |
| BshNI | GGYRCC | 1 cut(s) | 1400 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BsiSI | CCGG | 1 cut(s) | 819 |
| BslFI | GGGAC | 4 cut(s) | 1097, 1558, 1613, 1781 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 24 |
| BsmAI | GTCTC | 5 cut(s) | 29, 521, 626, 926, 1201 |
| BsmBI | CGTCTC | 2 cut(s) | 29, 1201 |
| BsmFI | GGGAC | 4 cut(s) | 1097, 1558, 1613, 1781 |
| BsmI | GAATGC | 1 cut(s) | 1520 |
| BsnI | GGCC | 3 cut(s) | 302, 1267, 1607 |
| Bso31I | GGTCTC | 1 cut(s) | 926 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 8 cut(s) | 181, 272, 283, 688, 1134, 1429, 1464, 1489 |
| BspACI | CCGC | 4 cut(s) | 299, 963, 1404, 1455 |
| BspANI | GGCC | 3 cut(s) | 302, 1267, 1607 |
| BspHI | TCATGA | 2 cut(s) | 691, 1137 |
| BspLI | GGNNCC | 5 cut(s) | 601, 912, 1368, 1402, 1534 |
| BspMAI | CTGCAG | 1 cut(s) | 1005 |
| BspPI | GGATC | 1 cut(s) | 176 |
| BspT107I | GGYRCC | 1 cut(s) | 1400 |
| BspTNI | GGTCTC | 1 cut(s) | 926 |
| BsrDI | GCAATG | 2 cut(s) | 866, 1749 |
| BsrI | ACTGG | 4 cut(s) | 535, 1211, 1328, 1765 |
| BssECI | CCNNGG | 2 cut(s) | 134, 482 |
| BssMI | GATC | 8 cut(s) | 181, 272, 283, 688, 1134, 1429, 1464, 1489 |
| Bst2UI | CCWGG | 4 cut(s) | 135, 908, 1247, 1478 |
| Bst4CI | ACNGT | 3 cut(s) | 1147, 1567, 1736 |
| Bst6I | CTCTTC | 1 cut(s) | 293 |
| BstDEI | CTNAG | 1 cut(s) | 488 |
| BstDSI | CCRYGG | 1 cut(s) | 482 |
| BstF5I | GGATG | 5 cut(s) | 145, 258, 396, 576, 677 |
| BstHHI | GCGC | 3 cut(s) | 428, 758, 1236 |
| BstKTI | GATC | 8 cut(s) | 184, 275, 286, 691, 1137, 1432, 1467, 1492 |
| BstMAI | GTCTC | 5 cut(s) | 29, 521, 626, 926, 1201 |
| BstMBI | GATC | 8 cut(s) | 181, 272, 283, 688, 1134, 1429, 1464, 1489 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1242 |
| BstNI | CCWGG | 4 cut(s) | 135, 908, 1247, 1478 |
| BstNSI | RCATGY | 2 cut(s) | 247, 1319 |
| BstSCI | CCNGG | 4 cut(s) | 133, 906, 1245, 1476 |
| BstSFI | CTRYAG | 1 cut(s) | 1001 |
| BstX2I | RGATCY | 2 cut(s) | 181, 283 |
| BstYI | RGATCY | 2 cut(s) | 181, 283 |
| BsuRI | GGCC | 3 cut(s) | 302, 1267, 1607 |
| BtgI | CCRYGG | 1 cut(s) | 482 |
| BtsCI | GGATG | 5 cut(s) | 145, 258, 396, 576, 677 |
| BtsIMutI | CAGTG | 1 cut(s) | 1444 |
| CciI | TCATGA | 2 cut(s) | 691, 1137 |
| CfoI | GCGC | 3 cut(s) | 428, 758, 1236 |
| Cfr13I | GGNCC | 5 cut(s) | 131, 1265, 1410, 1457, 1605 |
| CseI | GACGC | 1 cut(s) | 815 |
| Csp6I | GTAC | 6 cut(s) | 534, 610, 822, 1148, 1425, 1449 |
| CviAII | CATG | 9 cut(s) | 244, 604, 692, 870, 1138, 1231, 1316, 1407, 1670 |
| CviQI | GTAC | 6 cut(s) | 534, 610, 822, 1148, 1425, 1449 |
| DdeI | CTNAG | 1 cut(s) | 488 |
| DpnI | GATC | 8 cut(s) | 183, 274, 285, 690, 1136, 1431, 1466, 1491 |
| DpnII | GATC | 8 cut(s) | 181, 272, 283, 688, 1134, 1429, 1464, 1489 |
| DraI | TTTAAA | 1 cut(s) | 721 |
| Eam1104I | CTCTTC | 1 cut(s) | 293 |
| EarI | CTCTTC | 1 cut(s) | 293 |
| Eco31I | GGTCTC | 1 cut(s) | 926 |
| Eco32I | GATATC | 2 cut(s) | 220, 1071 |
| Eco47I | GGWCC | 3 cut(s) | 131, 1410, 1457 |
| EcoRII | CCWGG | 4 cut(s) | 133, 906, 1245, 1476 |
| EcoRV | GATATC | 2 cut(s) | 220, 1071 |
| Esp3I | CGTCTC | 2 cut(s) | 29, 1201 |
| FaeI | CATG | 9 cut(s) | 247, 607, 695, 873, 1141, 1234, 1319, 1410, 1673 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1370, 1402, 1444, 1476 |
| FaqI | GGGAC | 4 cut(s) | 1097, 1558, 1613, 1781 |
| FatI | CATG | 9 cut(s) | 243, 603, 691, 869, 1137, 1230, 1315, 1406, 1669 |
| FauNDI | CATATG | 1 cut(s) | 1281 |
| FbaI | TGATCA | 3 cut(s) | 688, 1134, 1429 |
| Fnu4HI | GCNGC | 2 cut(s) | 300, 964 |
| FokI | GGATG | 5 cut(s) | 152, 265, 383, 563, 684 |
| Fsp4HI | GCNGC | 2 cut(s) | 300, 964 |
| FspBI | CTAG | 1 cut(s) | 1511 |
| GlaI | GCGC | 3 cut(s) | 427, 757, 1235 |
| GluI | GCNGC | 2 cut(s) | 300, 964 |
| GsaI | CCCAGC | 1 cut(s) | 1768 |
| GsuI | CTGGAG | 2 cut(s) | 929, 1499 |
| HaeIII | GGCC | 3 cut(s) | 302, 1267, 1607 |
| HapII | CCGG | 1 cut(s) | 819 |
| HgaI | GACGC | 1 cut(s) | 815 |
| HhaI | GCGC | 3 cut(s) | 428, 758, 1236 |
| Hin1II | CATG | 9 cut(s) | 247, 607, 695, 873, 1141, 1234, 1319, 1410, 1673 |
| Hin6I | GCGC | 3 cut(s) | 426, 756, 1234 |
| HinP1I | GCGC | 3 cut(s) | 426, 756, 1234 |
| HincII | GTYRAC | 2 cut(s) | 1051, 1321 |
| HindII | GTYRAC | 2 cut(s) | 1051, 1321 |
| HindIII | AAGCTT | 2 cut(s) | 1040, 1590 |
| HinfI | GANTC | 3 cut(s) | 61, 91, 1682 |
| HpaI | GTTAAC | 1 cut(s) | 1321 |
| HpaII | CCGG | 1 cut(s) | 819 |
| HphI | GGTGA | 2 cut(s) | 727, 1144 |
| Hpy166II | GTNNAC | 4 cut(s) | 727, 1051, 1321, 1777 |
| Hpy188I | TCNGA | 7 cut(s) | 34, 123, 374, 599, 1312, 1376, 1543 |
| Hpy188III | TCNNGA | 8 cut(s) | 53, 68, 526, 692, 1114, 1138, 1358, 1511 |
| Hpy8I | GTNNAC | 4 cut(s) | 727, 1051, 1321, 1777 |
| Hpy99I | CGWCG | 1 cut(s) | 218 |
| HpyAV | CCTTC | 3 cut(s) | 662, 1111, 1470 |
| HpyCH4III | ACNGT | 3 cut(s) | 1147, 1567, 1736 |
| HpyCH4IV | ACGT | 1 cut(s) | 325 |
| HpyCH4V | TGCA | 5 cut(s) | 683, 859, 926, 1003, 1063 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1242 |
| HpyF3I | CTNAG | 1 cut(s) | 488 |
| HpySE526I | ACGT | 1 cut(s) | 325 |
| Hsp92II | CATG | 9 cut(s) | 247, 607, 695, 873, 1141, 1234, 1319, 1410, 1673 |
| HspAI | GCGC | 3 cut(s) | 426, 756, 1234 |
| Ksp22I | TGATCA | 3 cut(s) | 688, 1134, 1429 |
| KspAI | GTTAAC | 1 cut(s) | 1321 |
| Kzo9I | GATC | 8 cut(s) | 181, 272, 283, 688, 1134, 1429, 1464, 1489 |
| LmnI | GCTCC | 5 cut(s) | 4, 374, 599, 910, 1538 |
| LweI | GCATC | 3 cut(s) | 38, 130, 1050 |
| MaeI | CTAG | 1 cut(s) | 1511 |
| MaeII | ACGT | 1 cut(s) | 325 |
| MaeIII | GTNAC | 4 cut(s) | 385, 491, 1725, 1796 |
| MalI | GATC | 8 cut(s) | 183, 274, 285, 690, 1136, 1431, 1466, 1491 |
| MboI | GATC | 8 cut(s) | 181, 272, 283, 688, 1134, 1429, 1464, 1489 |
| MboII | GAAGA | 9 cut(s) | 181, 184, 280, 1069, 1138, 1175, 1378, 1630, 1710 |
| MflI | RGATCY | 2 cut(s) | 181, 283 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MluCI | AATT | 9 cut(s) | 313, 328, 542, 838, 883, 1525, 1623, 1713, 1784 |
| MlyI | GAGTC | 1 cut(s) | 100 |
| MmeI | TCCRAC | 4 cut(s) | 42, 101, 765, 1687 |
| MnlI | CCTC | 9 cut(s) | 33, 70, 243, 822, 1248, 1354, 1672, 1686, 1748 |
| MslI | CAYNNNNRTG | 2 cut(s) | 941, 1437 |
| MspI | CCGG | 1 cut(s) | 819 |
| MspR9I | CCNGG | 4 cut(s) | 135, 908, 1247, 1478 |
| Mva1269I | GAATGC | 1 cut(s) | 1520 |
| MvaI | CCWGG | 4 cut(s) | 135, 908, 1247, 1478 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1242 |
| NdeI | CATATG | 1 cut(s) | 1281 |
| NdeII | GATC | 8 cut(s) | 181, 272, 283, 688, 1134, 1429, 1464, 1489 |
| NlaIII | CATG | 9 cut(s) | 247, 607, 695, 873, 1141, 1234, 1319, 1410, 1673 |
| NlaIV | GGNNCC | 5 cut(s) | 601, 912, 1368, 1402, 1534 |
| NmeAIII | GCCGAG | 1 cut(s) | 939 |
| NmuCI | GTSAC | 2 cut(s) | 491, 1796 |
| NspI | RCATGY | 2 cut(s) | 247, 1319 |
| OliI | CACNNNNGTG | 1 cut(s) | 1437 |
| PagI | TCATGA | 2 cut(s) | 691, 1137 |
| PctI | GAATGC | 1 cut(s) | 1520 |
| PfeI | GAWTC | 2 cut(s) | 61, 1682 |
| PkrI | GCNGC | 2 cut(s) | 301, 965 |
| PleI | GAGTC | 1 cut(s) | 99 |
| PpsI | GAGTC | 1 cut(s) | 99 |
| PshBI | ATTAAT | 1 cut(s) | 1787 |
| Psp6I | CCWGG | 4 cut(s) | 133, 906, 1245, 1476 |
| PspFI | CCCAGC | 1 cut(s) | 1764 |
| PspGI | CCWGG | 4 cut(s) | 133, 906, 1245, 1476 |
| PspN4I | GGNNCC | 5 cut(s) | 601, 912, 1368, 1402, 1534 |
| PspPI | GGNCC | 5 cut(s) | 131, 1265, 1410, 1457, 1605 |
| PstI | CTGCAG | 1 cut(s) | 1005 |
| PsuI | RGATCY | 2 cut(s) | 181, 283 |
| RsaI | GTAC | 6 cut(s) | 535, 611, 823, 1149, 1426, 1450 |
| RsaNI | GTAC | 6 cut(s) | 534, 610, 822, 1148, 1425, 1449 |
| RseI | CAYNNNNRTG | 2 cut(s) | 941, 1437 |
| SatI | GCNGC | 2 cut(s) | 300, 964 |
| Sau3AI | GATC | 8 cut(s) | 181, 272, 283, 688, 1134, 1429, 1464, 1489 |
| Sau96I | GGNCC | 5 cut(s) | 131, 1265, 1410, 1457, 1605 |
| SchI | GAGTC | 1 cut(s) | 100 |
| ScrFI | CCNGG | 4 cut(s) | 135, 908, 1247, 1478 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SfaNI | GCATC | 3 cut(s) | 38, 130, 1050 |
| SfcI | CTRYAG | 1 cut(s) | 1001 |
| SinI | GGWCC | 3 cut(s) | 131, 1410, 1457 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 941, 1437 |
| Sse9I | AATT | 9 cut(s) | 313, 328, 542, 838, 883, 1525, 1623, 1713, 1784 |
| SsiI | CCGC | 4 cut(s) | 299, 963, 1404, 1455 |
| SspMI | CTAG | 1 cut(s) | 1511 |
| StyD4I | CCNGG | 4 cut(s) | 133, 906, 1245, 1476 |
| TaaI | ACNGT | 3 cut(s) | 1147, 1567, 1736 |
| TaiI | ACGT | 1 cut(s) | 328 |
| TaqI | TCGA | 4 cut(s) | 525, 1357, 1463, 1470 |
| TasI | AATT | 9 cut(s) | 313, 328, 542, 838, 883, 1525, 1623, 1713, 1784 |
| TatI | WGTACW | 1 cut(s) | 1448 |
| TauI | GCSGC | 2 cut(s) | 302, 966 |
| TfiI | GAWTC | 2 cut(s) | 61, 1682 |
| TscAI | CASTG | 1 cut(s) | 1444 |
| TseFI | GTSAC | 2 cut(s) | 491, 1796 |
| Tsp45I | GTSAC | 2 cut(s) | 491, 1796 |
| TspDTI | ATGAA | 7 cut(s) | 100, 340, 565, 1139, 1154, 1205, 1378 |
| TspRI | CASTG | 1 cut(s) | 1444 |
| VpaK11BI | GGWCC | 3 cut(s) | 131, 1410, 1457 |
| VspI | ATTAAT | 1 cut(s) | 1787 |
| XapI | RAATTY | 1 cut(s) | 883 |
| XbaI | TCTAGA | 1 cut(s) | 1510 |
| XceI | RCATGY | 2 cut(s) | 247, 1319 |
| XspI | CTAG | 1 cut(s) | 1511 |