ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 366 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 713, 1575 |
| AccI | GTMKAC | 1 cut(s) | 1321 |
| AciI | CCGC | 2 cut(s) | 341, 985 |
| AclWI | GGATC | 4 cut(s) | 58, 411, 1336, 1703 |
| AcsI | RAATTY | 3 cut(s) | 811, 889, 1204 |
| AcuI | CTGAAG | 3 cut(s) | 669, 1149, 1182 |
| AcyI | GRCGYC | 1 cut(s) | 367 |
| AdeI | CACNNNGTG | 1 cut(s) | 928 |
| AfaI | GTAC | 3 cut(s) | 1031, 1297, 1392 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 129, 273, 274, 398, 399, 713, 1575, 1637, 1711 |
| AflIII | ACRYGT | 1 cut(s) | 1726 |
| AgeI | ACCGGT | 1 cut(s) | 348 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1911 |
| AjnI | CCWGG | 1 cut(s) | 66 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 1977 |
| Alw21I | GWGCWC | 3 cut(s) | 447, 601, 1163 |
| Alw26I | GTCTC | 4 cut(s) | 11, 756, 1401, 1597 |
| Alw44I | GTGCAC | 2 cut(s) | 597, 1159 |
| AlwI | GGATC | 4 cut(s) | 58, 411, 1336, 1703 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1528 |
| Ama87I | CYCGRG | 1 cut(s) | 1355 |
| AoxI | GGCC | 2 cut(s) | 264, 1372 |
| ApaLI | GTGCAC | 2 cut(s) | 597, 1159 |
| ApeKI | GCWGC | 3 cut(s) | 982, 1432, 1802 |
| ApoI | RAATTY | 3 cut(s) | 811, 889, 1204 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1892, 1924 |
| AseI | ATTAAT | 2 cut(s) | 884, 1659 |
| AsiGI | ACCGGT | 1 cut(s) | 348 |
| AspLEI | GCGC | 2 cut(s) | 369, 630 |
| AspS9I | GGNCC | 3 cut(s) | 265, 346, 1372 |
| AsuC2I | CCSGG | 1 cut(s) | 376 |
| AsuHPI | GGTGA | 4 cut(s) | 485, 940, 1025, 1981 |
| AsuII | TTCGAA | 2 cut(s) | 220, 1447 |
| AvaI | CYCGRG | 1 cut(s) | 1355 |
| AvaII | GGWCC | 1 cut(s) | 346 |
| BaeGI | GKGCMC | 3 cut(s) | 535, 601, 1163 |
| BanI | GGYRCC | 1 cut(s) | 366 |
| BauI | CACGAG | 1 cut(s) | 1275 |
| Bbv12I | GWGCWC | 3 cut(s) | 447, 601, 1163 |
| BbvI | GCAGC | 3 cut(s) | 994, 1419, 1814 |
| BceAI | ACGGC | 1 cut(s) | 89 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 320, 354, 1914, 1948 |
| BciT130I | CCWGG | 1 cut(s) | 68 |
| BciVI | GTATCC | 1 cut(s) | 1768 |
| BclI | TGATCA | 1 cut(s) | 462 |
| BcnI | CCSGG | 1 cut(s) | 376 |
| BcoDI | GTCTC | 4 cut(s) | 11, 756, 1401, 1597 |
| BfaI | CTAG | 4 cut(s) | 21, 212, 522, 1887 |
| BfmI | CTRYAG | 1 cut(s) | 631 |
| BfoI | RGCGCY | 1 cut(s) | 370 |
| BfuI | GTATCC | 1 cut(s) | 1768 |
| BisI | GCNGC | 3 cut(s) | 983, 1433, 1803 |
| BlpI | GCTNAGC | 1 cut(s) | 441 |
| BlsI | GCNGC | 3 cut(s) | 984, 1434, 1804 |
| BmcAI | AGTACT | 2 cut(s) | 1031, 1392 |
| Bme1390I | CCNGG | 2 cut(s) | 68, 376 |
| Bme18I | GGWCC | 1 cut(s) | 346 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1911 |
| BmeT110I | CYCGRG | 1 cut(s) | 1355 |
| BmgT120I | GGNCC | 3 cut(s) | 265, 346, 1372 |
| BmiI | GGNNCC | 1 cut(s) | 368 |
| BmrFI | CCNGG | 2 cut(s) | 68, 376 |
| BmsI | GCATC | 5 cut(s) | 1055, 1179, 1272, 1912, 1936 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 908, 940, 1886, 1918 |
| BpmI | CTGGAG | 3 cut(s) | 977, 1552, 1617 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 441 |
| Bpu14I | TTCGAA | 2 cut(s) | 220, 1447 |
| BpuMI | CCSGG | 1 cut(s) | 376 |
| Bsa29I | ATCGAT | 3 cut(s) | 52, 579, 1920 |
| BsaBI | GATNNNNATC | 1 cut(s) | 408 |
| BsaHI | GRCGYC | 1 cut(s) | 367 |
| BsaI | GGTCTC | 1 cut(s) | 1401 |
| BsaJI | CCNNGG | 3 cut(s) | 1075, 1345, 1619 |
| BsaWI | WCCGGW | 1 cut(s) | 348 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 219, 249, 609, 639, 842, 872, 1615, 1645 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 129, 273, 274, 398, 399, 713, 1575, 1637, 1711 |
| Bse118I | RCCGGY | 1 cut(s) | 348 |
| Bse1I | ACTGG | 5 cut(s) | 960, 980, 1484, 1508, 1634 |
| Bse3DI | GCAATG | 1 cut(s) | 1485 |
| Bse8I | GATNNNNATC | 1 cut(s) | 408 |
| BseBI | CCWGG | 1 cut(s) | 68 |
| BseCI | ATCGAT | 3 cut(s) | 52, 579, 1920 |
| BseDI | CCNNGG | 3 cut(s) | 1075, 1345, 1619 |
| BseGI | GGATG | 8 cut(s) | 514, 807, 1194, 1230, 1321, 1556, 1646, 1903 |
| BseJI | GATNNNNATC | 1 cut(s) | 408 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 129, 273, 274, 398, 399, 713, 1575, 1637, 1711 |
| BseMI | GCAATG | 1 cut(s) | 1485 |
| BseMII | CTCAG | 6 cut(s) | 432, 1262, 1313, 1417, 1731, 1812 |
| BseNI | ACTGG | 5 cut(s) | 960, 980, 1484, 1508, 1634 |
| BseRI | GAGGAG | 6 cut(s) | 260, 744, 974, 977, 1617, 1620 |
| BseSI | GKGCMC | 3 cut(s) | 535, 601, 1163 |
| BseXI | GCAGC | 3 cut(s) | 994, 1419, 1814 |
| BseYI | CCCAGC | 1 cut(s) | 528 |
| Bsh1285I | CGRYCG | 2 cut(s) | 100, 353 |
| BshFI | GGCC | 2 cut(s) | 266, 1374 |
| BshNI | GGYRCC | 1 cut(s) | 366 |
| BshTI | ACCGGT | 1 cut(s) | 348 |
| BshVI | ATCGAT | 3 cut(s) | 52, 579, 1920 |
| BsiEI | CGRYCG | 2 cut(s) | 100, 353 |
| BsiHKAI | GWGCWC | 3 cut(s) | 447, 601, 1163 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1355 |
| BsiSI | CCGG | 3 cut(s) | 349, 375, 1772 |
| BslFI | GGGAC | 1 cut(s) | 1727 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 129, 273, 274, 398, 399, 713, 1575, 1637, 1711 |
| BsmAI | GTCTC | 4 cut(s) | 11, 756, 1401, 1597 |
| BsmBI | CGTCTC | 2 cut(s) | 11, 1597 |
| BsmFI | GGGAC | 1 cut(s) | 1727 |
| BsmI | GAATGC | 1 cut(s) | 357 |
| BsnI | GGCC | 2 cut(s) | 266, 1374 |
| Bso31I | GGTCTC | 1 cut(s) | 1401 |
| BsoBI | CYCGRG | 1 cut(s) | 1355 |
| Bsp119I | TTCGAA | 2 cut(s) | 220, 1447 |
| Bsp1286I | GDGCHC | 4 cut(s) | 447, 535, 601, 1163 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 441 |
| BspACI | CCGC | 2 cut(s) | 341, 985 |
| BspANI | GGCC | 2 cut(s) | 266, 1374 |
| BspCNI | CTCAG | 6 cut(s) | 433, 1261, 1312, 1416, 1730, 1813 |
| BspDI | ATCGAT | 3 cut(s) | 52, 579, 1920 |
| BspLI | GGNNCC | 1 cut(s) | 368 |
| BspPI | GGATC | 4 cut(s) | 58, 411, 1336, 1703 |
| BspQI | GCTCTTC | 2 cut(s) | 1051, 1792 |
| BspT104I | TTCGAA | 2 cut(s) | 220, 1447 |
| BspT107I | GGYRCC | 1 cut(s) | 366 |
| BspTNI | GGTCTC | 1 cut(s) | 1401 |
| BsrDI | GCAATG | 1 cut(s) | 1485 |
| BsrFI | RCCGGY | 1 cut(s) | 348 |
| BsrI | ACTGG | 5 cut(s) | 960, 980, 1484, 1508, 1634 |
| BssAI | RCCGGY | 1 cut(s) | 348 |
| BssECI | CCNNGG | 3 cut(s) | 1075, 1345, 1619 |
| BssNI | GRCGYC | 1 cut(s) | 367 |
| BssSI | CACGAG | 1 cut(s) | 1275 |
| BssT1I | CCWWGG | 2 cut(s) | 1345, 1619 |
| Bst2BI | CACGAG | 1 cut(s) | 1275 |
| Bst2UI | CCWGG | 1 cut(s) | 68 |
| Bst4CI | ACNGT | 4 cut(s) | 252, 1183, 1326, 1780 |
| Bst6I | CTCTTC | 3 cut(s) | 1051, 1583, 1792 |
| BstACI | GRCGYC | 1 cut(s) | 367 |
| BstBI | TTCGAA | 2 cut(s) | 220, 1447 |
| BstC8I | GCNNGC | 3 cut(s) | 987, 1194, 1492 |
| BstDEI | CTNAG | 9 cut(s) | 441, 990, 1062, 1248, 1299, 1378, 1403, 1717, 1821 |
| BstEII | GGTNACC | 1 cut(s) | 1349 |
| BstF5I | GGATG | 8 cut(s) | 514, 807, 1194, 1230, 1321, 1556, 1646, 1903 |
| BstH2I | RGCGCY | 1 cut(s) | 370 |
| BstHHI | GCGC | 2 cut(s) | 369, 630 |
| BstMAI | GTCTC | 4 cut(s) | 11, 756, 1401, 1597 |
| BstMCI | CGRYCG | 2 cut(s) | 100, 353 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 110, 634, 788, 1111, 1673 |
| BstNI | CCWGG | 1 cut(s) | 68 |
| BstNSI | RCATGY | 2 cut(s) | 1730, 1809 |
| BstPI | GGTNACC | 1 cut(s) | 1349 |
| BstSCI | CCNGG | 2 cut(s) | 66, 374 |
| BstSFI | CTRYAG | 1 cut(s) | 631 |
| BstSLI | GKGCMC | 3 cut(s) | 535, 601, 1163 |
| BstV1I | GCAGC | 3 cut(s) | 994, 1419, 1814 |
| BstX2I | RGATCY | 1 cut(s) | 63 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 609, 1369, 1641 |
| BstYI | RGATCY | 1 cut(s) | 63 |
| Bsu15I | ATCGAT | 3 cut(s) | 52, 579, 1920 |
| BsuI | GTATCC | 1 cut(s) | 1768 |
| BsuRI | GGCC | 2 cut(s) | 266, 1374 |
| BsuTUI | ATCGAT | 3 cut(s) | 52, 579, 1920 |
| BtsCI | GGATG | 8 cut(s) | 514, 807, 1194, 1230, 1321, 1556, 1646, 1903 |
| BtsI | GCAGTG | 1 cut(s) | 1815 |
| BtsIMutI | CAGTG | 8 cut(s) | 247, 368, 693, 1206, 1256, 1307, 1641, 1815 |
| Cac8I | GCNNGC | 3 cut(s) | 987, 1194, 1492 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1528 |
| CfoI | GCGC | 2 cut(s) | 369, 630 |
| Cfr10I | RCCGGY | 1 cut(s) | 348 |
| Cfr13I | GGNCC | 3 cut(s) | 265, 346, 1372 |
| ClaI | ATCGAT | 3 cut(s) | 52, 579, 1920 |
| Csp6I | GTAC | 3 cut(s) | 1030, 1296, 1391 |
| CspAI | ACCGGT | 1 cut(s) | 348 |
| CviQI | GTAC | 3 cut(s) | 1030, 1296, 1391 |
| DdeI | CTNAG | 9 cut(s) | 441, 990, 1062, 1248, 1299, 1378, 1403, 1717, 1821 |
| DinI | GGCGCC | 1 cut(s) | 368 |
| DraI | TTTAAA | 1 cut(s) | 1615 |
| DraIII | CACNNNGTG | 1 cut(s) | 928 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1911 |
| Eam1104I | CTCTTC | 3 cut(s) | 1051, 1583, 1792 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1911 |
| EarI | CTCTTC | 3 cut(s) | 1051, 1583, 1792 |
| Eco130I | CCWWGG | 2 cut(s) | 1345, 1619 |
| Eco31I | GGTCTC | 1 cut(s) | 1401 |
| Eco32I | GATATC | 1 cut(s) | 1090 |
| Eco47I | GGWCC | 1 cut(s) | 346 |
| Eco57I | CTGAAG | 3 cut(s) | 669, 1149, 1182 |
| Eco88I | CYCGRG | 1 cut(s) | 1355 |
| Eco91I | GGTNACC | 1 cut(s) | 1349 |
| EcoO65I | GGTNACC | 1 cut(s) | 1349 |
| EcoRI | GAATTC | 1 cut(s) | 811 |
| EcoRII | CCWGG | 1 cut(s) | 66 |
| EcoRV | GATATC | 1 cut(s) | 1090 |
| EcoT14I | CCWWGG | 2 cut(s) | 1345, 1619 |
| EgeI | GGCGCC | 1 cut(s) | 368 |
| EheI | GGCGCC | 1 cut(s) | 368 |
| ErhI | CCWWGG | 2 cut(s) | 1345, 1619 |
| Esp3I | CGTCTC | 2 cut(s) | 11, 1597 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1250, 1282, 1943, 1975 |
| FaqI | GGGAC | 1 cut(s) | 1727 |
| FauI | CCCGC | 1 cut(s) | 978 |
| FbaI | TGATCA | 1 cut(s) | 462 |
| FblI | GTMKAC | 1 cut(s) | 1321 |
| Fnu4HI | GCNGC | 3 cut(s) | 983, 1433, 1803 |
| FokI | GGATG | 8 cut(s) | 521, 814, 1201, 1217, 1328, 1563, 1653, 1910 |
| Fsp4HI | GCNGC | 3 cut(s) | 983, 1433, 1803 |
| FspBI | CTAG | 4 cut(s) | 21, 212, 522, 1887 |
| GlaI | GCGC | 2 cut(s) | 368, 629 |
| GluI | GCNGC | 3 cut(s) | 983, 1433, 1803 |
| GsaI | CCCAGC | 1 cut(s) | 532 |
| GsuI | CTGGAG | 3 cut(s) | 977, 1552, 1617 |
| HaeII | RGCGCY | 1 cut(s) | 370 |
| HaeIII | GGCC | 2 cut(s) | 266, 1374 |
| HapII | CCGG | 3 cut(s) | 349, 375, 1772 |
| HhaI | GCGC | 2 cut(s) | 369, 630 |
| Hin1I | GRCGYC | 1 cut(s) | 367 |
| Hin6I | GCGC | 2 cut(s) | 367, 628 |
| HinP1I | GCGC | 2 cut(s) | 367, 628 |
| HindIII | AAGCTT | 2 cut(s) | 1194, 1952 |
| HpaII | CCGG | 3 cut(s) | 349, 375, 1772 |
| HphI | GGTGA | 4 cut(s) | 485, 940, 1025, 1981 |
| Hpy166II | GTNNAC | 8 cut(s) | 346, 599, 774, 953, 1161, 1322, 1756, 1811 |
| Hpy188III | TCNNGA | 6 cut(s) | 306, 560, 1234, 1277, 1569, 1873 |
| Hpy8I | GTNNAC | 8 cut(s) | 346, 599, 774, 953, 1161, 1322, 1756, 1811 |
| HpyAV | CCTTC | 7 cut(s) | 239, 424, 499, 841, 1004, 1252, 1549 |
| HpyCH4III | ACNGT | 4 cut(s) | 252, 1183, 1326, 1780 |
| HpyCH4IV | ACGT | 2 cut(s) | 321, 1386 |
| HpyCH4V | TGCA | 9 cut(s) | 208, 599, 877, 1161, 1192, 1289, 1435, 1925, 1943 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 110, 634, 788, 1111, 1673 |
| HpyF3I | CTNAG | 9 cut(s) | 441, 990, 1062, 1248, 1299, 1378, 1403, 1717, 1821 |
| HpySE526I | ACGT | 2 cut(s) | 321, 1386 |
| Hsp92I | GRCGYC | 1 cut(s) | 367 |
| HspAI | GCGC | 2 cut(s) | 367, 628 |
| KasI | GGCGCC | 1 cut(s) | 366 |
| Ksp22I | TGATCA | 1 cut(s) | 462 |
| LguI | GCTCTTC | 2 cut(s) | 1051, 1792 |
| LmnI | GCTCC | 2 cut(s) | 1231, 1664 |
| Lsp1109I | GCAGC | 3 cut(s) | 994, 1419, 1814 |
| LweI | GCATC | 5 cut(s) | 1055, 1179, 1272, 1912, 1936 |
| MaeI | CTAG | 4 cut(s) | 21, 212, 522, 1887 |
| MaeII | ACGT | 2 cut(s) | 321, 1386 |
| MaeIII | GTNAC | 4 cut(s) | 691, 826, 908, 1349 |
| MboII | GAAGA | 9 cut(s) | 148, 290, 725, 796, 1068, 1139, 1274, 1600, 1809 |
| MflI | RGATCY | 1 cut(s) | 63 |
| MhlI | GDGCHC | 4 cut(s) | 447, 535, 601, 1163 |
| MluCI | AATT | 9 cut(s) | 76, 434, 708, 811, 881, 889, 941, 1204, 1464 |
| Mly113I | GGCGCC | 1 cut(s) | 367 |
| MlyI | GAGTC | 8 cut(s) | 758, 834, 1065, 1367, 1618, 1709, 1859, 1895 |
| MmeI | TCCRAC | 3 cut(s) | 1235, 1455, 1483 |
| MseI | TTAA | 8 cut(s) | 480, 884, 1212, 1614, 1647, 1659, 1709, 1827 |
| MslI | CAYNNNNRTG | 4 cut(s) | 324, 607, 661, 1249 |
| MspA1I | CMGCKG | 1 cut(s) | 985 |
| MspI | CCGG | 3 cut(s) | 349, 375, 1772 |
| MspR9I | CCNGG | 2 cut(s) | 68, 376 |
| MssI | GTTTAAAC | 1 cut(s) | 1615 |
| Mva1269I | GAATGC | 1 cut(s) | 357 |
| MvaI | CCWGG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 110, 634, 788, 1111, 1673 |
| NarI | GGCGCC | 1 cut(s) | 367 |
| NciI | CCSGG | 1 cut(s) | 376 |
| NlaIV | GGNNCC | 1 cut(s) | 368 |
| NmuCI | GTSAC | 1 cut(s) | 826 |
| NspI | RCATGY | 2 cut(s) | 1730, 1809 |
| NspV | TTCGAA | 2 cut(s) | 220, 1447 |
| PaeR7I | CTCGAG | 1 cut(s) | 1355 |
| PciI | ACATGT | 1 cut(s) | 1726 |
| PciSI | GCTCTTC | 2 cut(s) | 1051, 1792 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 102, 327 |
| PctI | GAATGC | 1 cut(s) | 357 |
| PfeI | GAWTC | 3 cut(s) | 541, 1066, 1151 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 713, 1575 |
| PinAI | ACCGGT | 1 cut(s) | 348 |
| PkrI | GCNGC | 3 cut(s) | 984, 1434, 1804 |
| Ple19I | CGATCG | 1 cut(s) | 100 |
| PleI | GAGTC | 8 cut(s) | 757, 833, 1065, 1366, 1618, 1709, 1858, 1895 |
| PluTI | GGCGCC | 1 cut(s) | 370 |
| PmeI | GTTTAAAC | 1 cut(s) | 1615 |
| PpsI | GAGTC | 8 cut(s) | 757, 833, 1065, 1366, 1618, 1709, 1858, 1895 |
| PscI | ACATGT | 1 cut(s) | 1726 |
| PshBI | ATTAAT | 2 cut(s) | 884, 1659 |
| Psp6I | CCWGG | 1 cut(s) | 66 |
| PspEI | GGTNACC | 1 cut(s) | 1349 |
| PspFI | CCCAGC | 1 cut(s) | 528 |
| PspGI | CCWGG | 1 cut(s) | 66 |
| PspN4I | GGNNCC | 1 cut(s) | 368 |
| PspPI | GGNCC | 3 cut(s) | 265, 346, 1372 |
| PspXI | VCTCGAGB | 1 cut(s) | 1355 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1528 |
| PsuI | RGATCY | 1 cut(s) | 63 |
| PvuI | CGATCG | 1 cut(s) | 100 |
| RsaI | GTAC | 3 cut(s) | 1031, 1297, 1392 |
| RsaNI | GTAC | 3 cut(s) | 1030, 1296, 1391 |
| RseI | CAYNNNNRTG | 4 cut(s) | 324, 607, 661, 1249 |
| SapI | GCTCTTC | 2 cut(s) | 1051, 1792 |
| SaqAI | TTAA | 8 cut(s) | 480, 884, 1212, 1614, 1647, 1659, 1709, 1827 |
| SatI | GCNGC | 3 cut(s) | 983, 1433, 1803 |
| Sau96I | GGNCC | 3 cut(s) | 265, 346, 1372 |
| ScaI | AGTACT | 2 cut(s) | 1031, 1392 |
| SchI | GAGTC | 8 cut(s) | 758, 834, 1065, 1367, 1618, 1709, 1859, 1895 |
| ScrFI | CCNGG | 2 cut(s) | 68, 376 |
| SduI | GDGCHC | 4 cut(s) | 447, 535, 601, 1163 |
| SfaNI | GCATC | 5 cut(s) | 1055, 1179, 1272, 1912, 1936 |
| SfcI | CTRYAG | 1 cut(s) | 631 |
| SfoI | GGCGCC | 1 cut(s) | 368 |
| Sfr274I | CTCGAG | 1 cut(s) | 1355 |
| SfuI | TTCGAA | 2 cut(s) | 220, 1447 |
| SinI | GGWCC | 1 cut(s) | 346 |
| SlaI | CTCGAG | 1 cut(s) | 1355 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 324, 607, 661, 1249 |
| SmlI | CTYRAG | 1 cut(s) | 1355 |
| SmoI | CTYRAG | 1 cut(s) | 1355 |
| Sse9I | AATT | 9 cut(s) | 76, 434, 708, 811, 881, 889, 941, 1204, 1464 |
| SsiI | CCGC | 2 cut(s) | 341, 985 |
| SspDI | GGCGCC | 1 cut(s) | 366 |
| SspI | AATATT | 2 cut(s) | 1443, 1657 |
| SspMI | CTAG | 4 cut(s) | 21, 212, 522, 1887 |
| StyD4I | CCNGG | 2 cut(s) | 66, 374 |
| StyI | CCWWGG | 2 cut(s) | 1345, 1619 |
| TaaI | ACNGT | 4 cut(s) | 252, 1183, 1326, 1780 |
| TaiI | ACGT | 2 cut(s) | 324, 1389 |
| TasI | AATT | 9 cut(s) | 76, 434, 708, 811, 881, 889, 941, 1204, 1464 |
| TatI | WGTACW | 2 cut(s) | 1029, 1390 |
| TfiI | GAWTC | 3 cut(s) | 541, 1066, 1151 |
| Tru1I | TTAA | 8 cut(s) | 480, 884, 1212, 1614, 1647, 1659, 1709, 1827 |
| Tru9I | TTAA | 8 cut(s) | 480, 884, 1212, 1614, 1647, 1659, 1709, 1827 |
| TscAI | CASTG | 8 cut(s) | 247, 368, 693, 1206, 1256, 1307, 1641, 1822 |
| TseFI | GTSAC | 1 cut(s) | 826 |
| TseI | GCWGC | 3 cut(s) | 982, 1432, 1802 |
| Tsp45I | GTSAC | 1 cut(s) | 826 |
| TspRI | CASTG | 8 cut(s) | 247, 368, 693, 1206, 1256, 1307, 1641, 1822 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 713, 1575 |
| VneI | GTGCAC | 2 cut(s) | 597, 1159 |
| VpaK11BI | GGWCC | 1 cut(s) | 346 |
| VspI | ATTAAT | 2 cut(s) | 884, 1659 |
| XapI | RAATTY | 3 cut(s) | 811, 889, 1204 |
| XceI | RCATGY | 2 cut(s) | 1730, 1809 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1251 |
| XhoI | CTCGAG | 1 cut(s) | 1355 |
| XmiI | GTMKAC | 1 cut(s) | 1321 |
| XspI | CTAG | 4 cut(s) | 21, 212, 522, 1887 |
| ZrmI | AGTACT | 2 cut(s) | 1031, 1392 |