ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 105, 198 |
| AccBSI | CCGCTC | 1 cut(s) | 527 |
| AccI | GTMKAC | 1 cut(s) | 327 |
| AccII | CGCG | 1 cut(s) | 479 |
| AccIII | TCCGGA | 1 cut(s) | 1012 |
| AciI | CCGC | 3 cut(s) | 403, 527, 584 |
| AclWI | GGATC | 1 cut(s) | 698 |
| AcsI | RAATTY | 1 cut(s) | 668 |
| AcuI | CTGAAG | 1 cut(s) | 753 |
| AfaI | GTAC | 4 cut(s) | 120, 187, 573, 992 |
| AfeI | AGCGCT | 1 cut(s) | 81 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 339, 715 |
| AflIII | ACRYGT | 1 cut(s) | 178 |
| AgeI | ACCGGT | 1 cut(s) | 278 |
| AgsI | TTSAA | 4 cut(s) | 76, 361, 373, 473 |
| AjiI | CACGTC | 1 cut(s) | 181 |
| AjnI | CCWGG | 1 cut(s) | 1006 |
| AleI | CACNNNNGTG | 1 cut(s) | 798 |
| AluBI | AGCT | 4 cut(s) | 437, 627, 743, 940 |
| AluI | AGCT | 4 cut(s) | 437, 627, 743, 940 |
| Alw26I | GTCTC | 3 cut(s) | 41, 241, 1008 |
| AlwI | GGATC | 1 cut(s) | 698 |
| Aor13HI | TCCGGA | 1 cut(s) | 1012 |
| Aor51HI | AGCGCT | 1 cut(s) | 81 |
| ApeKI | GCWGC | 2 cut(s) | 82, 688 |
| ApoI | RAATTY | 1 cut(s) | 668 |
| AsiGI | ACCGGT | 1 cut(s) | 278 |
| AspLEI | GCGC | 5 cut(s) | 64, 82, 106, 199, 479 |
| AspS9I | GGNCC | 3 cut(s) | 227, 967, 1010 |
| AsuHPI | GGTGA | 2 cut(s) | 293, 935 |
| AvaII | GGWCC | 3 cut(s) | 227, 967, 1010 |
| BaeGI | GKGCMC | 2 cut(s) | 795, 949 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 169, 202 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 318, 350 |
| BbsI | GAAGAC | 1 cut(s) | 456 |
| BbvI | GCAGC | 2 cut(s) | 69, 700 |
| BciT130I | CCWGG | 1 cut(s) | 1008 |
| BciVI | GTATCC | 1 cut(s) | 554 |
| BclI | TGATCA | 2 cut(s) | 9, 781 |
| BcoDI | GTCTC | 3 cut(s) | 41, 241, 1008 |
| BfaI | CTAG | 4 cut(s) | 138, 231, 455, 464 |
| BfoI | RGCGCY | 1 cut(s) | 83 |
| BfuI | GTATCC | 1 cut(s) | 554 |
| BisI | GCNGC | 2 cut(s) | 83, 689 |
| BlsI | GCNGC | 2 cut(s) | 84, 690 |
| BmcAI | AGTACT | 1 cut(s) | 120 |
| Bme1390I | CCNGG | 1 cut(s) | 1008 |
| Bme18I | GGWCC | 3 cut(s) | 227, 967, 1010 |
| BmgBI | CACGTC | 1 cut(s) | 181 |
| BmgT120I | GGNCC | 3 cut(s) | 227, 967, 1010 |
| BmrFI | CCNGG | 1 cut(s) | 1008 |
| BmrI | ACTGGG | 1 cut(s) | 582 |
| BmsI | GCATC | 2 cut(s) | 208, 700 |
| BmuI | ACTGGG | 1 cut(s) | 582 |
| BpiI | GAAGAC | 1 cut(s) | 456 |
| Bpu10I | CCTNAGC | 1 cut(s) | 65 |
| BpuEI | CTTGAG | 1 cut(s) | 550 |
| Bsa29I | ATCGAT | 1 cut(s) | 661 |
| BsaAI | YACGTR | 1 cut(s) | 311 |
| BsaBI | GATNNNNATC | 3 cut(s) | 171, 347, 597 |
| BsaJI | CCNNGG | 2 cut(s) | 239, 338 |
| BsaWI | WCCGGW | 2 cut(s) | 278, 1012 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 384, 414, 988, 1018 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 339, 715 |
| Bse118I | RCCGGY | 1 cut(s) | 278 |
| Bse1I | ACTGG | 3 cut(s) | 588, 800, 925 |
| Bse8I | GATNNNNATC | 3 cut(s) | 171, 347, 597 |
| BseAI | TCCGGA | 1 cut(s) | 1012 |
| BseBI | CCWGG | 1 cut(s) | 1008 |
| BseCI | ATCGAT | 1 cut(s) | 661 |
| BseDI | CCNNGG | 2 cut(s) | 239, 338 |
| BseGI | GGATG | 1 cut(s) | 967 |
| BseJI | GATNNNNATC | 3 cut(s) | 171, 347, 597 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 339, 715 |
| BseMII | CTCAG | 1 cut(s) | 113 |
| BseNI | ACTGG | 3 cut(s) | 588, 800, 925 |
| BseSI | GKGCMC | 2 cut(s) | 795, 949 |
| BseXI | GCAGC | 2 cut(s) | 69, 700 |
| BseYI | CCCAGC | 1 cut(s) | 769 |
| Bsh1236I | CGCG | 1 cut(s) | 479 |
| Bsh1285I | CGRYCG | 1 cut(s) | 407 |
| BshTI | ACCGGT | 1 cut(s) | 278 |
| BshVI | ATCGAT | 1 cut(s) | 661 |
| BsiEI | CGRYCG | 1 cut(s) | 407 |
| BsiSI | CCGG | 2 cut(s) | 279, 1013 |
| BslFI | GGGAC | 1 cut(s) | 547 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 339, 715 |
| BsmAI | GTCTC | 3 cut(s) | 41, 241, 1008 |
| BsmFI | GGGAC | 1 cut(s) | 547 |
| BsmI | GAATGC | 1 cut(s) | 502 |
| Bsp1286I | GDGCHC | 2 cut(s) | 795, 949 |
| Bsp13I | TCCGGA | 1 cut(s) | 1012 |
| Bsp143I | GATC | 6 cut(s) | 9, 172, 460, 598, 703, 781 |
| Bsp19I | CCATGG | 1 cut(s) | 338 |
| BspACI | CCGC | 3 cut(s) | 403, 527, 584 |
| BspCNI | CTCAG | 1 cut(s) | 114 |
| BspDI | ATCGAT | 1 cut(s) | 661 |
| BspEI | TCCGGA | 1 cut(s) | 1012 |
| BspFNI | CGCG | 1 cut(s) | 479 |
| BspHI | TCATGA | 1 cut(s) | 784 |
| BspPI | GGATC | 1 cut(s) | 698 |
| BsrBI | CCGCTC | 1 cut(s) | 527 |
| BsrFI | RCCGGY | 1 cut(s) | 278 |
| BsrI | ACTGG | 3 cut(s) | 588, 800, 925 |
| BssAI | RCCGGY | 1 cut(s) | 278 |
| BssECI | CCNNGG | 2 cut(s) | 239, 338 |
| BssMI | GATC | 6 cut(s) | 9, 172, 460, 598, 703, 781 |
| BssT1I | CCWWGG | 1 cut(s) | 338 |
| Bst2UI | CCWGG | 1 cut(s) | 1008 |
| Bst4CI | ACNGT | 3 cut(s) | 240, 266, 749 |
| BstBAI | YACGTR | 1 cut(s) | 311 |
| BstC8I | GCNNGC | 4 cut(s) | 135, 274, 621, 625 |
| BstDEI | CTNAG | 3 cut(s) | 65, 111, 122 |
| BstDSI | CCRYGG | 2 cut(s) | 239, 338 |
| BstF5I | GGATG | 1 cut(s) | 967 |
| BstFNI | CGCG | 1 cut(s) | 479 |
| BstH2I | RGCGCY | 1 cut(s) | 83 |
| BstHHI | GCGC | 5 cut(s) | 64, 82, 106, 199, 479 |
| BstKTI | GATC | 6 cut(s) | 12, 175, 463, 601, 706, 784 |
| BstMAI | GTCTC | 3 cut(s) | 41, 241, 1008 |
| BstMBI | GATC | 6 cut(s) | 9, 172, 460, 598, 703, 781 |
| BstMCI | CGRYCG | 1 cut(s) | 407 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 652 |
| BstNI | CCWGG | 1 cut(s) | 1008 |
| BstSCI | CCNGG | 1 cut(s) | 1006 |
| BstSLI | GKGCMC | 2 cut(s) | 795, 949 |
| BstUI | CGCG | 1 cut(s) | 479 |
| BstV1I | GCAGC | 2 cut(s) | 69, 700 |
| BstV2I | GAAGAC | 1 cut(s) | 456 |
| Bsu15I | ATCGAT | 1 cut(s) | 661 |
| BsuI | GTATCC | 1 cut(s) | 554 |
| BsuTUI | ATCGAT | 1 cut(s) | 661 |
| BtgI | CCRYGG | 2 cut(s) | 239, 338 |
| BtrI | CACGTC | 1 cut(s) | 181 |
| BtsCI | GGATG | 1 cut(s) | 967 |
| BtsIMutI | CAGTG | 3 cut(s) | 64, 595, 793 |
| Cac8I | GCNNGC | 4 cut(s) | 135, 274, 621, 625 |
| CciI | TCATGA | 1 cut(s) | 784 |
| CfoI | GCGC | 5 cut(s) | 64, 82, 106, 199, 479 |
| Cfr10I | RCCGGY | 1 cut(s) | 278 |
| Cfr13I | GGNCC | 3 cut(s) | 227, 967, 1010 |
| ClaI | ATCGAT | 1 cut(s) | 661 |
| CseI | GACGC | 2 cut(s) | 218, 635 |
| Csp6I | GTAC | 4 cut(s) | 119, 186, 572, 991 |
| CspAI | ACCGGT | 1 cut(s) | 278 |
| CviAII | CATG | 4 cut(s) | 339, 489, 543, 785 |
| CviQI | GTAC | 4 cut(s) | 119, 186, 572, 991 |
| DdeI | CTNAG | 3 cut(s) | 65, 111, 122 |
| DpnI | GATC | 6 cut(s) | 11, 174, 462, 600, 705, 783 |
| DpnII | GATC | 6 cut(s) | 9, 172, 460, 598, 703, 781 |
| DraI | TTTAAA | 1 cut(s) | 667 |
| Eco130I | CCWWGG | 1 cut(s) | 338 |
| Eco47I | GGWCC | 3 cut(s) | 227, 967, 1010 |
| Eco47III | AGCGCT | 1 cut(s) | 81 |
| Eco57I | CTGAAG | 1 cut(s) | 753 |
| EcoO109I | RGGNCCY | 1 cut(s) | 227 |
| EcoRII | CCWGG | 1 cut(s) | 1006 |
| EcoT14I | CCWWGG | 1 cut(s) | 338 |
| ErhI | CCWWGG | 1 cut(s) | 338 |
| FaeI | CATG | 4 cut(s) | 342, 492, 546, 788 |
| FaqI | GGGAC | 1 cut(s) | 547 |
| FatI | CATG | 4 cut(s) | 338, 488, 542, 784 |
| FbaI | TGATCA | 2 cut(s) | 9, 781 |
| FblI | GTMKAC | 1 cut(s) | 327 |
| Fnu4HI | GCNGC | 2 cut(s) | 83, 689 |
| FokI | GGATG | 1 cut(s) | 974 |
| Fsp4HI | GCNGC | 2 cut(s) | 83, 689 |
| FspBI | CTAG | 4 cut(s) | 138, 231, 455, 464 |
| FspI | TGCGCA | 2 cut(s) | 105, 198 |
| GlaI | GCGC | 5 cut(s) | 63, 81, 105, 198, 478 |
| GluI | GCNGC | 2 cut(s) | 83, 689 |
| GsaI | CCCAGC | 1 cut(s) | 773 |
| HaeII | RGCGCY | 1 cut(s) | 83 |
| HapII | CCGG | 2 cut(s) | 279, 1013 |
| HgaI | GACGC | 2 cut(s) | 218, 635 |
| HhaI | GCGC | 5 cut(s) | 64, 82, 106, 199, 479 |
| Hin1II | CATG | 4 cut(s) | 342, 492, 546, 788 |
| Hin6I | GCGC | 5 cut(s) | 62, 80, 104, 197, 477 |
| HinP1I | GCGC | 5 cut(s) | 62, 80, 104, 197, 477 |
| HindIII | AAGCTT | 1 cut(s) | 435 |
| HinfI | GANTC | 6 cut(s) | 293, 329, 593, 674, 904, 931 |
| HpaII | CCGG | 2 cut(s) | 279, 1013 |
| HphI | GGTGA | 2 cut(s) | 293, 935 |
| Hpy166II | GTNNAC | 4 cut(s) | 236, 284, 328, 855 |
| Hpy188I | TCNGA | 7 cut(s) | 163, 409, 598, 936, 958, 971, 987 |
| Hpy188III | TCNNGA | 3 cut(s) | 431, 785, 1013 |
| Hpy8I | GTNNAC | 4 cut(s) | 236, 284, 328, 855 |
| Hpy99I | CGWCG | 1 cut(s) | 212 |
| HpyAV | CCTTC | 3 cut(s) | 344, 721, 782 |
| HpyCH4III | ACNGT | 3 cut(s) | 240, 266, 749 |
| HpyCH4IV | ACGT | 4 cut(s) | 180, 286, 310, 514 |
| HpyCH4V | TGCA | 5 cut(s) | 85, 272, 500, 619, 688 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 652 |
| HpyF3I | CTNAG | 3 cut(s) | 65, 111, 122 |
| HpySE526I | ACGT | 4 cut(s) | 180, 286, 310, 514 |
| Hsp92II | CATG | 4 cut(s) | 342, 492, 546, 788 |
| HspAI | GCGC | 5 cut(s) | 62, 80, 104, 197, 477 |
| Kpn2I | TCCGGA | 1 cut(s) | 1012 |
| Ksp22I | TGATCA | 2 cut(s) | 9, 781 |
| Kzo9I | GATC | 6 cut(s) | 9, 172, 460, 598, 703, 781 |
| Lsp1109I | GCAGC | 2 cut(s) | 69, 700 |
| LweI | GCATC | 2 cut(s) | 208, 700 |
| MaeI | CTAG | 4 cut(s) | 138, 231, 455, 464 |
| MaeII | ACGT | 4 cut(s) | 180, 286, 310, 514 |
| MaeIII | GTNAC | 2 cut(s) | 829, 916 |
| MalI | GATC | 6 cut(s) | 11, 174, 462, 600, 705, 783 |
| MbiI | CCGCTC | 1 cut(s) | 527 |
| MboI | GATC | 6 cut(s) | 9, 172, 460, 598, 703, 781 |
| MboII | GAAGA | 4 cut(s) | 176, 461, 493, 746 |
| MhlI | GDGCHC | 2 cut(s) | 795, 949 |
| MluCI | AATT | 5 cut(s) | 92, 509, 668, 721, 763 |
| MlyI | GAGTC | 2 cut(s) | 323, 683 |
| MmeI | TCCRAC | 1 cut(s) | 387 |
| MnlI | CCTC | 8 cut(s) | 36, 134, 386, 416, 871, 892, 952, 958 |
| MroI | TCCGGA | 1 cut(s) | 1012 |
| MseI | TTAA | 2 cut(s) | 666, 885 |
| MslI | CAYNNNNRTG | 1 cut(s) | 798 |
| MspI | CCGG | 2 cut(s) | 279, 1013 |
| MspR9I | CCNGG | 1 cut(s) | 1008 |
| Mva1269I | GAATGC | 1 cut(s) | 502 |
| MvaI | CCWGG | 1 cut(s) | 1008 |
| MvnI | CGCG | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 652 |
| NcoI | CCATGG | 1 cut(s) | 338 |
| NdeII | GATC | 6 cut(s) | 9, 172, 460, 598, 703, 781 |
| NlaIII | CATG | 4 cut(s) | 342, 492, 546, 788 |
| NmuCI | GTSAC | 1 cut(s) | 916 |
| NsbI | TGCGCA | 2 cut(s) | 105, 198 |
| OliI | CACNNNNGTG | 1 cut(s) | 798 |
| PagI | TCATGA | 1 cut(s) | 784 |
| PctI | GAATGC | 1 cut(s) | 502 |
| PfeI | GAWTC | 4 cut(s) | 293, 593, 904, 931 |
| PinAI | ACCGGT | 1 cut(s) | 278 |
| PkrI | GCNGC | 2 cut(s) | 84, 690 |
| PleI | GAGTC | 2 cut(s) | 323, 682 |
| PpsI | GAGTC | 2 cut(s) | 323, 682 |
| Ppu21I | YACGTR | 1 cut(s) | 311 |
| PpuMI | RGGWCCY | 1 cut(s) | 227 |
| Psp5II | RGGWCCY | 1 cut(s) | 227 |
| Psp6I | CCWGG | 1 cut(s) | 1006 |
| PspFI | CCCAGC | 1 cut(s) | 769 |
| PspGI | CCWGG | 1 cut(s) | 1006 |
| PspPI | GGNCC | 3 cut(s) | 227, 967, 1010 |
| PspPPI | RGGWCCY | 1 cut(s) | 227 |
| RsaI | GTAC | 4 cut(s) | 120, 187, 573, 992 |
| RsaNI | GTAC | 4 cut(s) | 119, 186, 572, 991 |
| RseI | CAYNNNNRTG | 1 cut(s) | 798 |
| SaqAI | TTAA | 2 cut(s) | 666, 885 |
| SatI | GCNGC | 2 cut(s) | 83, 689 |
| Sau3AI | GATC | 6 cut(s) | 9, 172, 460, 598, 703, 781 |
| Sau96I | GGNCC | 3 cut(s) | 227, 967, 1010 |
| ScaI | AGTACT | 1 cut(s) | 120 |
| SchI | GAGTC | 2 cut(s) | 323, 683 |
| ScrFI | CCNGG | 1 cut(s) | 1008 |
| SduI | GDGCHC | 2 cut(s) | 795, 949 |
| SfaNI | GCATC | 2 cut(s) | 208, 700 |
| SgrAI | CRCCGGYG | 1 cut(s) | 278 |
| SinI | GGWCC | 3 cut(s) | 227, 967, 1010 |
| SmiI | ATTTAAAT | 1 cut(s) | 667 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 798 |
| SmlI | CTYRAG | 1 cut(s) | 565 |
| SmoI | CTYRAG | 1 cut(s) | 565 |
| Sse9I | AATT | 5 cut(s) | 92, 509, 668, 721, 763 |
| SsiI | CCGC | 3 cut(s) | 403, 527, 584 |
| SspMI | CTAG | 4 cut(s) | 138, 231, 455, 464 |
| StyD4I | CCNGG | 1 cut(s) | 1006 |
| StyI | CCWWGG | 1 cut(s) | 338 |
| SwaI | ATTTAAAT | 1 cut(s) | 667 |
| TaaI | ACNGT | 3 cut(s) | 240, 266, 749 |
| TaiI | ACGT | 4 cut(s) | 183, 289, 313, 517 |
| TaqI | TCGA | 2 cut(s) | 207, 661 |
| TasI | AATT | 5 cut(s) | 92, 509, 668, 721, 763 |
| TatI | WGTACW | 1 cut(s) | 118 |
| TfiI | GAWTC | 4 cut(s) | 293, 593, 904, 931 |
| Tru1I | TTAA | 2 cut(s) | 666, 885 |
| Tru9I | TTAA | 2 cut(s) | 666, 885 |
| TscAI | CASTG | 3 cut(s) | 64, 595, 800 |
| TseFI | GTSAC | 1 cut(s) | 916 |
| TseI | GCWGC | 2 cut(s) | 82, 688 |
| Tsp45I | GTSAC | 1 cut(s) | 916 |
| TspDTI | ATGAA | 3 cut(s) | 462, 801, 944 |
| TspGWI | ACGGA | 1 cut(s) | 173 |
| TspRI | CASTG | 3 cut(s) | 64, 595, 800 |
| VpaK11BI | GGWCC | 3 cut(s) | 227, 967, 1010 |
| XapI | RAATTY | 1 cut(s) | 668 |
| XmiI | GTMKAC | 1 cut(s) | 327 |
| XspI | CTAG | 4 cut(s) | 138, 231, 455, 464 |
| ZrmI | AGTACT | 1 cut(s) | 120 |