ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 160 |
| AccBSI | CCGCTC | 1 cut(s) | 49 |
| AccI | GTMKAC | 1 cut(s) | 277 |
| AciI | CCGC | 3 cut(s) | 49, 73, 325 |
| AclWI | GGATC | 1 cut(s) | 368 |
| AcoI | YGGCCR | 1 cut(s) | 28 |
| AfaI | GTAC | 1 cut(s) | 386 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 72, 252, 355, 356 |
| AjnI | CCWGG | 1 cut(s) | 251 |
| AluBI | AGCT | 1 cut(s) | 130 |
| AluI | AGCT | 1 cut(s) | 130 |
| Alw21I | GWGCWC | 1 cut(s) | 138 |
| Alw26I | GTCTC | 1 cut(s) | 246 |
| Alw44I | GTGCAC | 1 cut(s) | 134 |
| AlwI | GGATC | 1 cut(s) | 368 |
| AoxI | GGCC | 2 cut(s) | 28, 63 |
| ApaI | GGGCCC | 1 cut(s) | 67 |
| ApaLI | GTGCAC | 1 cut(s) | 134 |
| ApeKI | GCWGC | 1 cut(s) | 97 |
| AspA2I | CCTAGG | 1 cut(s) | 226 |
| AspS9I | GGNCC | 2 cut(s) | 63, 64 |
| AsuHPI | GGTGA | 1 cut(s) | 121 |
| AvrII | CCTAGG | 1 cut(s) | 226 |
| BaeGI | GKGCMC | 2 cut(s) | 67, 138 |
| BalI | TGGCCA | 1 cut(s) | 30 |
| BanI | GGYRCC | 1 cut(s) | 160 |
| BanII | GRGCYC | 1 cut(s) | 67 |
| Bbv12I | GWGCWC | 1 cut(s) | 138 |
| BbvI | GCAGC | 1 cut(s) | 84 |
| BccI | CCATC | 1 cut(s) | 39 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 173, 207 |
| BciT130I | CCWGG | 1 cut(s) | 253 |
| BcoDI | GTCTC | 1 cut(s) | 246 |
| BfaI | CTAG | 2 cut(s) | 227, 388 |
| BisI | GCNGC | 4 cut(s) | 50, 74, 98, 326 |
| BlnI | CCTAGG | 1 cut(s) | 226 |
| BlsI | GCNGC | 4 cut(s) | 51, 75, 99, 327 |
| Bme1390I | CCNGG | 1 cut(s) | 253 |
| BmgT120I | GGNCC | 2 cut(s) | 63, 64 |
| BmiI | GGNNCC | 2 cut(s) | 65, 162 |
| BmrFI | CCNGG | 1 cut(s) | 253 |
| BmsI | GCATC | 2 cut(s) | 61, 171 |
| BpmI | CTGGAG | 1 cut(s) | 28 |
| BsaI | GGTCTC | 1 cut(s) | 246 |
| BsaJI | CCNNGG | 3 cut(s) | 101, 164, 226 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 72, 252, 355, 356 |
| Bse1I | ACTGG | 1 cut(s) | 22 |
| BseBI | CCWGG | 1 cut(s) | 253 |
| BseDI | CCNNGG | 3 cut(s) | 101, 164, 226 |
| BseGI | GGATG | 1 cut(s) | 31 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 72, 252, 355, 356 |
| BseNI | ACTGG | 1 cut(s) | 22 |
| BseSI | GKGCMC | 2 cut(s) | 67, 138 |
| BseXI | GCAGC | 1 cut(s) | 84 |
| BshFI | GGCC | 2 cut(s) | 30, 65 |
| BshNI | GGYRCC | 1 cut(s) | 160 |
| BsiHKAI | GWGCWC | 1 cut(s) | 138 |
| BslFI | GGGAC | 1 cut(s) | 209 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 72, 252, 355, 356 |
| BsmAI | GTCTC | 1 cut(s) | 246 |
| BsmFI | GGGAC | 1 cut(s) | 209 |
| BsnI | GGCC | 2 cut(s) | 30, 65 |
| Bso31I | GGTCTC | 1 cut(s) | 246 |
| Bsp120I | GGGCCC | 1 cut(s) | 63 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 138 |
| Bsp143I | GATC | 3 cut(s) | 85, 118, 360 |
| Bsp19I | CCATGG | 1 cut(s) | 101 |
| BspACI | CCGC | 3 cut(s) | 49, 73, 325 |
| BspANI | GGCC | 2 cut(s) | 30, 65 |
| BspLI | GGNNCC | 2 cut(s) | 65, 162 |
| BspPI | GGATC | 1 cut(s) | 368 |
| BspT107I | GGYRCC | 1 cut(s) | 160 |
| BspTNI | GGTCTC | 1 cut(s) | 246 |
| BsrBI | CCGCTC | 1 cut(s) | 49 |
| BsrI | ACTGG | 1 cut(s) | 22 |
| BssECI | CCNNGG | 3 cut(s) | 101, 164, 226 |
| BssMI | GATC | 3 cut(s) | 85, 118, 360 |
| BssT1I | CCWWGG | 3 cut(s) | 101, 164, 226 |
| Bst2UI | CCWGG | 1 cut(s) | 253 |
| Bst4CI | ACNGT | 1 cut(s) | 212 |
| BstC8I | GCNNGC | 1 cut(s) | 138 |
| BstDSI | CCRYGG | 1 cut(s) | 101 |
| BstF5I | GGATG | 1 cut(s) | 31 |
| BstKTI | GATC | 3 cut(s) | 88, 121, 363 |
| BstMAI | GTCTC | 1 cut(s) | 246 |
| BstMBI | GATC | 3 cut(s) | 85, 118, 360 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 302 |
| BstNI | CCWGG | 1 cut(s) | 253 |
| BstSCI | CCNGG | 1 cut(s) | 251 |
| BstSLI | GKGCMC | 2 cut(s) | 67, 138 |
| BstV1I | GCAGC | 1 cut(s) | 84 |
| BsuRI | GGCC | 2 cut(s) | 30, 65 |
| BtgI | CCRYGG | 1 cut(s) | 101 |
| BtsCI | GGATG | 1 cut(s) | 31 |
| Cac8I | GCNNGC | 1 cut(s) | 138 |
| Cfr13I | GGNCC | 2 cut(s) | 63, 64 |
| Csp6I | GTAC | 1 cut(s) | 385 |
| CviAII | CATG | 4 cut(s) | 93, 102, 355, 364 |
| CviJI | RGCY | 5 cut(s) | 6, 30, 65, 97, 130 |
| CviKI_1 | RGCY | 5 cut(s) | 6, 30, 65, 97, 130 |
| CviQI | GTAC | 1 cut(s) | 385 |
| DpnI | GATC | 3 cut(s) | 87, 120, 362 |
| DpnII | GATC | 3 cut(s) | 85, 118, 360 |
| EaeI | YGGCCR | 1 cut(s) | 28 |
| Eco130I | CCWWGG | 3 cut(s) | 101, 164, 226 |
| Eco24I | GRGCYC | 1 cut(s) | 67 |
| Eco31I | GGTCTC | 1 cut(s) | 246 |
| EcoO109I | RGGNCCY | 1 cut(s) | 64 |
| EcoRII | CCWGG | 1 cut(s) | 251 |
| EcoT14I | CCWWGG | 3 cut(s) | 101, 164, 226 |
| EcoT38I | GRGCYC | 1 cut(s) | 67 |
| ErhI | CCWWGG | 3 cut(s) | 101, 164, 226 |
| FaeI | CATG | 4 cut(s) | 96, 105, 358, 367 |
| FaiI | YATR | 6 cut(s) | 27, 94, 103, 208, 356, 365 |
| FaqI | GGGAC | 1 cut(s) | 209 |
| FatI | CATG | 4 cut(s) | 92, 101, 354, 363 |
| FblI | GTMKAC | 1 cut(s) | 277 |
| Fnu4HI | GCNGC | 4 cut(s) | 50, 74, 98, 326 |
| FokI | GGATG | 1 cut(s) | 18 |
| FriOI | GRGCYC | 1 cut(s) | 67 |
| Fsp4HI | GCNGC | 4 cut(s) | 50, 74, 98, 326 |
| FspBI | CTAG | 2 cut(s) | 227, 388 |
| GluI | GCNGC | 4 cut(s) | 50, 74, 98, 326 |
| GsuI | CTGGAG | 1 cut(s) | 28 |
| HaeIII | GGCC | 2 cut(s) | 30, 65 |
| Hin1II | CATG | 4 cut(s) | 96, 105, 358, 367 |
| HincII | GTYRAC | 1 cut(s) | 15 |
| HindII | GTYRAC | 1 cut(s) | 15 |
| HinfI | GANTC | 2 cut(s) | 197, 279 |
| HpaI | GTTAAC | 1 cut(s) | 15 |
| HphI | GGTGA | 1 cut(s) | 121 |
| Hpy166II | GTNNAC | 3 cut(s) | 15, 136, 278 |
| Hpy188I | TCNGA | 1 cut(s) | 223 |
| Hpy188III | TCNNGA | 1 cut(s) | 194 |
| Hpy8I | GTNNAC | 3 cut(s) | 15, 136, 278 |
| HpyAV | CCTTC | 3 cut(s) | 77, 142, 146 |
| HpyCH4III | ACNGT | 1 cut(s) | 212 |
| HpyCH4V | TGCA | 2 cut(s) | 136, 184 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 302 |
| Hsp92II | CATG | 4 cut(s) | 96, 105, 358, 367 |
| KspAI | GTTAAC | 1 cut(s) | 15 |
| Kzo9I | GATC | 3 cut(s) | 85, 118, 360 |
| LmnI | GCTCC | 1 cut(s) | 351 |
| LpnPI | CCDG | 5 cut(s) | 3, 116, 126, 238, 265 |
| Lsp1109I | GCAGC | 1 cut(s) | 84 |
| LweI | GCATC | 2 cut(s) | 61, 171 |
| MaeI | CTAG | 2 cut(s) | 227, 388 |
| MaeIII | GTNAC | 1 cut(s) | 333 |
| MalI | GATC | 3 cut(s) | 87, 120, 362 |
| MbiI | CCGCTC | 1 cut(s) | 49 |
| MboI | GATC | 3 cut(s) | 85, 118, 360 |
| MhlI | GDGCHC | 2 cut(s) | 67, 138 |
| MlsI | TGGCCA | 1 cut(s) | 30 |
| MluCI | AATT | 1 cut(s) | 215 |
| MluNI | TGGCCA | 1 cut(s) | 30 |
| MlyI | GAGTC | 2 cut(s) | 191, 273 |
| MmeI | TCCRAC | 1 cut(s) | 59 |
| MnlI | CCTC | 4 cut(s) | 3, 149, 162, 166 |
| Mox20I | TGGCCA | 1 cut(s) | 30 |
| MscI | TGGCCA | 1 cut(s) | 30 |
| MseI | TTAA | 1 cut(s) | 14 |
| Msp20I | TGGCCA | 1 cut(s) | 30 |
| MspA1I | CMGCKG | 1 cut(s) | 325 |
| MspR9I | CCNGG | 1 cut(s) | 253 |
| MvaI | CCWGG | 1 cut(s) | 253 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 302 |
| NcoI | CCATGG | 1 cut(s) | 101 |
| NdeII | GATC | 3 cut(s) | 85, 118, 360 |
| NlaIII | CATG | 4 cut(s) | 96, 105, 358, 367 |
| NlaIV | GGNNCC | 2 cut(s) | 65, 162 |
| NmuCI | GTSAC | 1 cut(s) | 333 |
| PkrI | GCNGC | 4 cut(s) | 51, 75, 99, 327 |
| PleI | GAGTC | 2 cut(s) | 191, 273 |
| PpsI | GAGTC | 2 cut(s) | 191, 273 |
| Psp6I | CCWGG | 1 cut(s) | 251 |
| PspGI | CCWGG | 1 cut(s) | 251 |
| PspN4I | GGNNCC | 2 cut(s) | 65, 162 |
| PspOMI | GGGCCC | 1 cut(s) | 63 |
| PspPI | GGNCC | 2 cut(s) | 63, 64 |
| RsaI | GTAC | 1 cut(s) | 386 |
| RsaNI | GTAC | 1 cut(s) | 385 |
| SaqAI | TTAA | 1 cut(s) | 14 |
| SatI | GCNGC | 4 cut(s) | 50, 74, 98, 326 |
| Sau3AI | GATC | 3 cut(s) | 85, 118, 360 |
| Sau96I | GGNCC | 2 cut(s) | 63, 64 |
| SchI | GAGTC | 2 cut(s) | 191, 273 |
| ScrFI | CCNGG | 1 cut(s) | 253 |
| SduI | GDGCHC | 2 cut(s) | 67, 138 |
| SetI | ASST | 6 cut(s) | 14, 132, 228, 254, 262, 344 |
| SfaNI | GCATC | 2 cut(s) | 61, 171 |
| Sse9I | AATT | 1 cut(s) | 215 |
| SsiI | CCGC | 3 cut(s) | 49, 73, 325 |
| SspMI | CTAG | 2 cut(s) | 227, 388 |
| StyD4I | CCNGG | 1 cut(s) | 251 |
| StyI | CCWWGG | 3 cut(s) | 101, 164, 226 |
| TaaI | ACNGT | 1 cut(s) | 212 |
| TaqI | TCGA | 1 cut(s) | 282 |
| TasI | AATT | 1 cut(s) | 215 |
| TatI | WGTACW | 1 cut(s) | 384 |
| TauI | GCSGC | 3 cut(s) | 52, 76, 328 |
| Tru1I | TTAA | 1 cut(s) | 14 |
| Tru9I | TTAA | 1 cut(s) | 14 |
| TseFI | GTSAC | 1 cut(s) | 333 |
| TseI | GCWGC | 1 cut(s) | 97 |
| Tsp45I | GTSAC | 1 cut(s) | 333 |
| TspDTI | ATGAA | 2 cut(s) | 195, 343 |
| VneI | GTGCAC | 1 cut(s) | 134 |
| XmaJI | CCTAGG | 1 cut(s) | 226 |
| XmiI | GTMKAC | 1 cut(s) | 277 |
| XspI | CTAG | 2 cut(s) | 227, 388 |