ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 374 |
| AccB1I | GGYRCC | 1 cut(s) | 21 |
| AciI | CCGC | 4 cut(s) | 5, 39, 318, 605 |
| AclI | AACGTT | 1 cut(s) | 379 |
| AclWI | GGATC | 1 cut(s) | 309 |
| AcoI | YGGCCR | 2 cut(s) | 496, 580 |
| AcsI | RAATTY | 1 cut(s) | 459 |
| AcyI | GRCGYC | 2 cut(s) | 22, 371 |
| AfaI | GTAC | 1 cut(s) | 322 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 45, 204 |
| AgsI | TTSAA | 5 cut(s) | 95, 454, 688, 695, 736 |
| AjiI | CACGTC | 1 cut(s) | 625 |
| AjnI | CCWGG | 2 cut(s) | 389, 563 |
| AluBI | AGCT | 3 cut(s) | 53, 219, 532 |
| AluI | AGCT | 3 cut(s) | 53, 219, 532 |
| AlwI | GGATC | 1 cut(s) | 309 |
| AoxI | GGCC | 2 cut(s) | 496, 580 |
| ApeKI | GCWGC | 1 cut(s) | 394 |
| ApoI | RAATTY | 1 cut(s) | 459 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 283, 489 |
| AspLEI | GCGC | 1 cut(s) | 24 |
| AspS9I | GGNCC | 1 cut(s) | 672 |
| AsuNHI | GCTAGC | 1 cut(s) | 49 |
| AvaII | GGWCC | 1 cut(s) | 672 |
| AxyI | CCTNAGG | 1 cut(s) | 187 |
| BalI | TGGCCA | 2 cut(s) | 498, 582 |
| BanI | GGYRCC | 1 cut(s) | 21 |
| BbsI | GAAGAC | 1 cut(s) | 743 |
| BbvI | GCAGC | 1 cut(s) | 381 |
| BccI | CCATC | 2 cut(s) | 507, 684 |
| BceAI | ACGGC | 1 cut(s) | 331 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 640, 674 |
| BciT130I | CCWGG | 2 cut(s) | 391, 565 |
| BfaI | CTAG | 3 cut(s) | 50, 588, 609 |
| BfoI | RGCGCY | 1 cut(s) | 25 |
| BisI | GCNGC | 2 cut(s) | 395, 605 |
| BlsI | GCNGC | 2 cut(s) | 396, 606 |
| Bme1390I | CCNGG | 2 cut(s) | 391, 565 |
| Bme18I | GGWCC | 1 cut(s) | 672 |
| BmgBI | CACGTC | 1 cut(s) | 625 |
| BmgT120I | GGNCC | 1 cut(s) | 672 |
| BmiI | GGNNCC | 2 cut(s) | 23, 674 |
| BmrFI | CCNGG | 2 cut(s) | 391, 565 |
| BmsI | GCATC | 3 cut(s) | 19, 94, 412 |
| BmtI | GCTAGC | 1 cut(s) | 53 |
| BpiI | GAAGAC | 1 cut(s) | 743 |
| BpmI | CTGGAG | 2 cut(s) | 79, 358 |
| BpuEI | CTTGAG | 1 cut(s) | 235 |
| BsaAI | YACGTR | 1 cut(s) | 404 |
| BsaHI | GRCGYC | 2 cut(s) | 22, 371 |
| BsaJI | CCNNGG | 2 cut(s) | 44, 431 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 45, 204 |
| Bse1I | ACTGG | 4 cut(s) | 328, 341, 352, 707 |
| Bse21I | CCTNAGG | 1 cut(s) | 187 |
| Bse3DI | GCAATG | 2 cut(s) | 180, 656 |
| BseBI | CCWGG | 2 cut(s) | 391, 565 |
| BseDI | CCNNGG | 2 cut(s) | 44, 431 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 45, 204 |
| BseMI | GCAATG | 2 cut(s) | 180, 656 |
| BseMII | CTCAG | 1 cut(s) | 630 |
| BseNI | ACTGG | 4 cut(s) | 328, 341, 352, 707 |
| BseXI | GCAGC | 1 cut(s) | 381 |
| BseYI | CCCAGC | 1 cut(s) | 528 |
| BsgI | GTGCAG | 1 cut(s) | 284 |
| BshFI | GGCC | 2 cut(s) | 498, 582 |
| BshNI | GGYRCC | 1 cut(s) | 21 |
| BslFI | GGGAC | 1 cut(s) | 611 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 45, 204 |
| BsmFI | GGGAC | 1 cut(s) | 611 |
| BsnI | GGCC | 2 cut(s) | 498, 582 |
| Bsp143I | GATC | 2 cut(s) | 301, 619 |
| Bsp19I | CCATGG | 1 cut(s) | 431 |
| BspACI | CCGC | 4 cut(s) | 5, 39, 318, 605 |
| BspANI | GGCC | 2 cut(s) | 498, 582 |
| BspCNI | CTCAG | 1 cut(s) | 629 |
| BspLI | GGNNCC | 2 cut(s) | 23, 674 |
| BspOI | GCTAGC | 1 cut(s) | 53 |
| BspPI | GGATC | 1 cut(s) | 309 |
| BspT107I | GGYRCC | 1 cut(s) | 21 |
| BsrDI | GCAATG | 2 cut(s) | 180, 656 |
| BsrI | ACTGG | 4 cut(s) | 328, 341, 352, 707 |
| BssECI | CCNNGG | 2 cut(s) | 44, 431 |
| BssMI | GATC | 2 cut(s) | 301, 619 |
| BssNI | GRCGYC | 2 cut(s) | 22, 371 |
| BssT1I | CCWWGG | 2 cut(s) | 44, 431 |
| Bst2UI | CCWGG | 2 cut(s) | 391, 565 |
| Bst4CI | ACNGT | 3 cut(s) | 36, 283, 359 |
| BstACI | GRCGYC | 2 cut(s) | 22, 371 |
| BstBAI | YACGTR | 1 cut(s) | 404 |
| BstC8I | GCNNGC | 5 cut(s) | 51, 55, 228, 267, 646 |
| BstDEI | CTNAG | 4 cut(s) | 187, 616, 663, 744 |
| BstDSI | CCRYGG | 1 cut(s) | 431 |
| BstH2I | RGCGCY | 1 cut(s) | 25 |
| BstHHI | GCGC | 1 cut(s) | 24 |
| BstKTI | GATC | 2 cut(s) | 304, 622 |
| BstMBI | GATC | 2 cut(s) | 301, 619 |
| BstNI | CCWGG | 2 cut(s) | 391, 565 |
| BstSCI | CCNGG | 2 cut(s) | 389, 563 |
| BstV1I | GCAGC | 1 cut(s) | 381 |
| BstV2I | GAAGAC | 1 cut(s) | 743 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| Bsu36I | CCTNAGG | 1 cut(s) | 187 |
| BsuRI | GGCC | 2 cut(s) | 498, 582 |
| BtgI | CCRYGG | 1 cut(s) | 431 |
| BtrI | CACGTC | 1 cut(s) | 625 |
| BtsI | GCAGTG | 1 cut(s) | 425 |
| BtsIMutI | CAGTG | 2 cut(s) | 334, 425 |
| Cac8I | GCNNGC | 5 cut(s) | 51, 55, 228, 267, 646 |
| CfoI | GCGC | 1 cut(s) | 24 |
| Cfr13I | GGNCC | 1 cut(s) | 672 |
| Csp6I | GTAC | 1 cut(s) | 321 |
| CviAII | CATG | 6 cut(s) | 14, 432, 494, 510, 584, 641 |
| CviQI | GTAC | 1 cut(s) | 321 |
| DdeI | CTNAG | 4 cut(s) | 187, 616, 663, 744 |
| DinI | GGCGCC | 1 cut(s) | 23 |
| DpnI | GATC | 2 cut(s) | 303, 621 |
| DpnII | GATC | 2 cut(s) | 301, 619 |
| EaeI | YGGCCR | 2 cut(s) | 496, 580 |
| Eco130I | CCWWGG | 2 cut(s) | 44, 431 |
| Eco32I | GATATC | 1 cut(s) | 574 |
| Eco47I | GGWCC | 1 cut(s) | 672 |
| Eco81I | CCTNAGG | 1 cut(s) | 187 |
| EcoO109I | RGGNCCY | 1 cut(s) | 672 |
| EcoRII | CCWGG | 2 cut(s) | 389, 563 |
| EcoRV | GATATC | 1 cut(s) | 574 |
| EcoT14I | CCWWGG | 2 cut(s) | 44, 431 |
| EgeI | GGCGCC | 1 cut(s) | 23 |
| EheI | GGCGCC | 1 cut(s) | 23 |
| ErhI | CCWWGG | 2 cut(s) | 44, 431 |
| FaeI | CATG | 6 cut(s) | 17, 435, 497, 513, 587, 644 |
| FaqI | GGGAC | 1 cut(s) | 611 |
| FatI | CATG | 6 cut(s) | 13, 431, 493, 509, 583, 640 |
| FauNDI | CATATG | 1 cut(s) | 297 |
| Fnu4HI | GCNGC | 2 cut(s) | 395, 605 |
| Fsp4HI | GCNGC | 2 cut(s) | 395, 605 |
| FspBI | CTAG | 3 cut(s) | 50, 588, 609 |
| GlaI | GCGC | 1 cut(s) | 23 |
| GluI | GCNGC | 2 cut(s) | 395, 605 |
| GsaI | CCCAGC | 1 cut(s) | 532 |
| GsuI | CTGGAG | 2 cut(s) | 79, 358 |
| HaeII | RGCGCY | 1 cut(s) | 25 |
| HaeIII | GGCC | 2 cut(s) | 498, 582 |
| HhaI | GCGC | 1 cut(s) | 24 |
| Hin1I | GRCGYC | 2 cut(s) | 22, 371 |
| Hin1II | CATG | 6 cut(s) | 17, 435, 497, 513, 587, 644 |
| Hin6I | GCGC | 1 cut(s) | 22 |
| HinP1I | GCGC | 1 cut(s) | 22 |
| HinfI | GANTC | 3 cut(s) | 614, 684, 695 |
| Hpy188I | TCNGA | 2 cut(s) | 163, 619 |
| Hpy188III | TCNNGA | 2 cut(s) | 214, 539 |
| HpyAV | CCTTC | 2 cut(s) | 479, 663 |
| HpyCH4III | ACNGT | 3 cut(s) | 36, 283, 359 |
| HpyCH4IV | ACGT | 4 cut(s) | 371, 379, 403, 624 |
| HpyCH4V | TGCA | 7 cut(s) | 10, 70, 265, 365, 425, 555, 709 |
| HpyF3I | CTNAG | 4 cut(s) | 187, 616, 663, 744 |
| HpySE526I | ACGT | 4 cut(s) | 371, 379, 403, 624 |
| Hsp92I | GRCGYC | 2 cut(s) | 22, 371 |
| Hsp92II | CATG | 6 cut(s) | 17, 435, 497, 513, 587, 644 |
| HspAI | GCGC | 1 cut(s) | 22 |
| KasI | GGCGCC | 1 cut(s) | 21 |
| Kzo9I | GATC | 2 cut(s) | 301, 619 |
| LmnI | GCTCC | 1 cut(s) | 537 |
| Lsp1109I | GCAGC | 1 cut(s) | 381 |
| LweI | GCATC | 3 cut(s) | 19, 94, 412 |
| MaeI | CTAG | 3 cut(s) | 50, 588, 609 |
| MaeII | ACGT | 4 cut(s) | 371, 379, 403, 624 |
| MaeIII | GTNAC | 3 cut(s) | 254, 399, 611 |
| MalI | GATC | 2 cut(s) | 303, 621 |
| MboI | GATC | 2 cut(s) | 301, 619 |
| MboII | GAAGA | 3 cut(s) | 283, 490, 552 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MlsI | TGGCCA | 2 cut(s) | 498, 582 |
| MluCI | AATT | 3 cut(s) | 123, 199, 459 |
| MluNI | TGGCCA | 2 cut(s) | 498, 582 |
| Mly113I | GGCGCC | 1 cut(s) | 22 |
| MlyI | GAGTC | 1 cut(s) | 608 |
| MnlI | CCTC | 3 cut(s) | 54, 129, 342 |
| Mox20I | TGGCCA | 2 cut(s) | 498, 582 |
| MroXI | GAANNNNTTC | 2 cut(s) | 283, 489 |
| MscI | TGGCCA | 2 cut(s) | 498, 582 |
| MseI | TTAA | 1 cut(s) | 168 |
| MslI | CAYNNNNRTG | 1 cut(s) | 430 |
| Msp20I | TGGCCA | 2 cut(s) | 498, 582 |
| MspR9I | CCNGG | 2 cut(s) | 391, 565 |
| MvaI | CCWGG | 2 cut(s) | 391, 565 |
| NarI | GGCGCC | 1 cut(s) | 22 |
| NcoI | CCATGG | 1 cut(s) | 431 |
| NdeI | CATATG | 1 cut(s) | 297 |
| NdeII | GATC | 2 cut(s) | 301, 619 |
| NheI | GCTAGC | 1 cut(s) | 49 |
| NlaIII | CATG | 6 cut(s) | 17, 435, 497, 513, 587, 644 |
| NlaIV | GGNNCC | 2 cut(s) | 23, 674 |
| NmuCI | GTSAC | 2 cut(s) | 254, 611 |
| PdmI | GAANNNNTTC | 2 cut(s) | 283, 489 |
| PfeI | GAWTC | 2 cut(s) | 684, 695 |
| PkrI | GCNGC | 2 cut(s) | 396, 606 |
| PleI | GAGTC | 1 cut(s) | 608 |
| PluTI | GGCGCC | 1 cut(s) | 25 |
| PpsI | GAGTC | 1 cut(s) | 608 |
| Ppu21I | YACGTR | 1 cut(s) | 404 |
| PpuMI | RGGWCCY | 1 cut(s) | 672 |
| Psp1406I | AACGTT | 1 cut(s) | 379 |
| Psp5II | RGGWCCY | 1 cut(s) | 672 |
| Psp6I | CCWGG | 2 cut(s) | 389, 563 |
| PspFI | CCCAGC | 1 cut(s) | 528 |
| PspGI | CCWGG | 2 cut(s) | 389, 563 |
| PspN4I | GGNNCC | 2 cut(s) | 23, 674 |
| PspPI | GGNCC | 1 cut(s) | 672 |
| PspPPI | RGGWCCY | 1 cut(s) | 672 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| RsaI | GTAC | 1 cut(s) | 322 |
| RsaNI | GTAC | 1 cut(s) | 321 |
| RseI | CAYNNNNRTG | 1 cut(s) | 430 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| SatI | GCNGC | 2 cut(s) | 395, 605 |
| Sau3AI | GATC | 2 cut(s) | 301, 619 |
| Sau96I | GGNCC | 1 cut(s) | 672 |
| SchI | GAGTC | 1 cut(s) | 608 |
| ScrFI | CCNGG | 2 cut(s) | 391, 565 |
| SetI | ASST | 8 cut(s) | 46, 55, 221, 374, 382, 406, 534, 627 |
| SfaNI | GCATC | 3 cut(s) | 19, 94, 412 |
| SfoI | GGCGCC | 1 cut(s) | 23 |
| SinI | GGWCC | 1 cut(s) | 672 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 430 |
| SmlI | CTYRAG | 1 cut(s) | 214 |
| SmoI | CTYRAG | 1 cut(s) | 214 |
| Sse9I | AATT | 3 cut(s) | 123, 199, 459 |
| SsiI | CCGC | 4 cut(s) | 5, 39, 318, 605 |
| SspDI | GGCGCC | 1 cut(s) | 21 |
| SspMI | CTAG | 3 cut(s) | 50, 588, 609 |
| StyD4I | CCNGG | 2 cut(s) | 389, 563 |
| StyI | CCWWGG | 2 cut(s) | 44, 431 |
| TaaI | ACNGT | 3 cut(s) | 36, 283, 359 |
| TaiI | ACGT | 4 cut(s) | 374, 382, 406, 627 |
| TaqI | TCGA | 1 cut(s) | 521 |
| TasI | AATT | 3 cut(s) | 123, 199, 459 |
| TauI | GCSGC | 1 cut(s) | 607 |
| TfiI | GAWTC | 2 cut(s) | 684, 695 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TscAI | CASTG | 2 cut(s) | 341, 432 |
| TseFI | GTSAC | 2 cut(s) | 254, 611 |
| TseI | GCWGC | 1 cut(s) | 394 |
| Tsp45I | GTSAC | 2 cut(s) | 254, 611 |
| TspDTI | ATGAA | 6 cut(s) | 121, 153, 298, 471, 482, 629 |
| TspGWI | ACGGA | 2 cut(s) | 382, 524 |
| TspRI | CASTG | 2 cut(s) | 341, 432 |
| VpaK11BI | GGWCC | 1 cut(s) | 672 |
| XapI | RAATTY | 1 cut(s) | 459 |
| XmnI | GAANNNNTTC | 2 cut(s) | 283, 489 |
| XspI | CTAG | 3 cut(s) | 50, 588, 609 |
| ZraI | GACGTC | 1 cut(s) | 372 |