ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 699 |
| AciI | CCGC | 3 cut(s) | 725, 792, 836 |
| AclWI | GGATC | 2 cut(s) | 12, 350 |
| AcsI | RAATTY | 3 cut(s) | 292, 458, 705 |
| AcuI | CTGAAG | 3 cut(s) | 41, 86, 392 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 319, 684 |
| AflIII | ACRYGT | 1 cut(s) | 762 |
| AgsI | TTSAA | 3 cut(s) | 142, 457, 613 |
| AhlI | ACTAGT | 2 cut(s) | 413, 632 |
| AluBI | AGCT | 3 cut(s) | 21, 512, 596 |
| AluI | AGCT | 3 cut(s) | 21, 512, 596 |
| Alw26I | GTCTC | 1 cut(s) | 246 |
| AlwI | GGATC | 2 cut(s) | 12, 350 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 64 |
| Ama87I | CYCGRG | 1 cut(s) | 199 |
| AoxI | GGCC | 2 cut(s) | 272, 437 |
| ApeKI | GCWGC | 3 cut(s) | 475, 478, 812 |
| ApoI | RAATTY | 3 cut(s) | 292, 458, 705 |
| AspLEI | GCGC | 4 cut(s) | 64, 169, 669, 700 |
| AspS9I | GGNCC | 2 cut(s) | 272, 622 |
| AsuHPI | GGTGA | 2 cut(s) | 347, 514 |
| AsuII | TTCGAA | 1 cut(s) | 462 |
| AvaI | CYCGRG | 1 cut(s) | 199 |
| AvaII | GGWCC | 1 cut(s) | 622 |
| BanII | GRGCYC | 1 cut(s) | 207 |
| BauI | CACGAG | 1 cut(s) | 482 |
| BbvI | GCAGC | 3 cut(s) | 462, 490, 824 |
| BccI | CCATC | 3 cut(s) | 391, 536, 651 |
| BcoDI | GTCTC | 1 cut(s) | 246 |
| BcuI | ACTAGT | 2 cut(s) | 413, 632 |
| BfaI | CTAG | 5 cut(s) | 116, 363, 414, 435, 633 |
| BfmI | CTRYAG | 1 cut(s) | 476 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BisI | GCNGC | 3 cut(s) | 476, 479, 813 |
| BlsI | GCNGC | 3 cut(s) | 477, 480, 814 |
| Bme18I | GGWCC | 1 cut(s) | 622 |
| BmeT110I | CYCGRG | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 2 cut(s) | 272, 622 |
| BmiI | GGNNCC | 3 cut(s) | 157, 206, 623 |
| BmsI | GCATC | 5 cut(s) | 37, 45, 178, 685, 712 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu14I | TTCGAA | 1 cut(s) | 462 |
| Bsa29I | ATCGAT | 1 cut(s) | 345 |
| BsaI | GGTCTC | 1 cut(s) | 246 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 319, 684 |
| Bse1I | ACTGG | 1 cut(s) | 253 |
| Bse3DI | GCAATG | 1 cut(s) | 801 |
| BseCI | ATCGAT | 1 cut(s) | 345 |
| BseGI | GGATG | 3 cut(s) | 16, 199, 805 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 319, 684 |
| BseMI | GCAATG | 1 cut(s) | 801 |
| BseMII | CTCAG | 1 cut(s) | 95 |
| BseNI | ACTGG | 1 cut(s) | 253 |
| BseRI | GAGGAG | 1 cut(s) | 587 |
| BseXI | GCAGC | 3 cut(s) | 462, 490, 824 |
| BsgI | GTGCAG | 1 cut(s) | 313 |
| BshFI | GGCC | 2 cut(s) | 274, 439 |
| BshVI | ATCGAT | 1 cut(s) | 345 |
| BsiHKCI | CYCGRG | 1 cut(s) | 199 |
| BslFI | GGGAC | 2 cut(s) | 407, 635 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 319, 684 |
| BsmAI | GTCTC | 1 cut(s) | 246 |
| BsmFI | GGGAC | 2 cut(s) | 407, 635 |
| BsmI | GAATGC | 1 cut(s) | 850 |
| BsnI | GGCC | 2 cut(s) | 274, 439 |
| Bso31I | GGTCTC | 1 cut(s) | 246 |
| BsoBI | CYCGRG | 1 cut(s) | 199 |
| Bsp119I | TTCGAA | 1 cut(s) | 462 |
| Bsp1286I | GDGCHC | 1 cut(s) | 207 |
| Bsp143I | GATC | 3 cut(s) | 4, 259, 342 |
| BspACI | CCGC | 3 cut(s) | 725, 792, 836 |
| BspANI | GGCC | 2 cut(s) | 274, 439 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspDI | ATCGAT | 1 cut(s) | 345 |
| BspLI | GGNNCC | 3 cut(s) | 157, 206, 623 |
| BspMAI | CTGCAG | 1 cut(s) | 480 |
| BspPI | GGATC | 2 cut(s) | 12, 350 |
| BspT104I | TTCGAA | 1 cut(s) | 462 |
| BspTNI | GGTCTC | 1 cut(s) | 246 |
| BsrDI | GCAATG | 1 cut(s) | 801 |
| BsrI | ACTGG | 1 cut(s) | 253 |
| BssMI | GATC | 3 cut(s) | 4, 259, 342 |
| BssSI | CACGAG | 1 cut(s) | 482 |
| Bst2BI | CACGAG | 1 cut(s) | 482 |
| Bst4CI | ACNGT | 2 cut(s) | 96, 626 |
| BstBI | TTCGAA | 1 cut(s) | 462 |
| BstDEI | CTNAG | 3 cut(s) | 17, 81, 849 |
| BstF5I | GGATG | 3 cut(s) | 16, 199, 805 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 4 cut(s) | 64, 169, 669, 700 |
| BstKTI | GATC | 3 cut(s) | 7, 262, 345 |
| BstMAI | GTCTC | 1 cut(s) | 246 |
| BstMBI | GATC | 3 cut(s) | 4, 259, 342 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 27, 436 |
| BstNSI | RCATGY | 2 cut(s) | 242, 766 |
| BstSFI | CTRYAG | 1 cut(s) | 476 |
| BstV1I | GCAGC | 3 cut(s) | 462, 490, 824 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| Bsu15I | ATCGAT | 1 cut(s) | 345 |
| BsuRI | GGCC | 2 cut(s) | 274, 439 |
| BsuTUI | ATCGAT | 1 cut(s) | 345 |
| BtsCI | GGATG | 3 cut(s) | 16, 199, 805 |
| CaiI | CAGNNNCTG | 1 cut(s) | 64 |
| CfoI | GCGC | 4 cut(s) | 64, 169, 669, 700 |
| Cfr13I | GGNCC | 2 cut(s) | 272, 622 |
| ClaI | ATCGAT | 1 cut(s) | 345 |
| CviAII | CATG | 6 cut(s) | 239, 359, 606, 679, 701, 763 |
| DdeI | CTNAG | 3 cut(s) | 17, 81, 849 |
| DpnI | GATC | 3 cut(s) | 6, 261, 344 |
| DpnII | GATC | 3 cut(s) | 4, 259, 342 |
| Eco147I | AGGCCT | 1 cut(s) | 439 |
| Eco24I | GRGCYC | 1 cut(s) | 207 |
| Eco31I | GGTCTC | 1 cut(s) | 246 |
| Eco47I | GGWCC | 1 cut(s) | 622 |
| Eco57I | CTGAAG | 3 cut(s) | 41, 86, 392 |
| Eco88I | CYCGRG | 1 cut(s) | 199 |
| EcoRI | GAATTC | 1 cut(s) | 292 |
| EcoT38I | GRGCYC | 1 cut(s) | 207 |
| FaeI | CATG | 6 cut(s) | 242, 362, 609, 682, 704, 766 |
| FaqI | GGGAC | 2 cut(s) | 407, 635 |
| FatI | CATG | 6 cut(s) | 238, 358, 605, 678, 700, 762 |
| FauI | CCCGC | 1 cut(s) | 718 |
| Fnu4HI | GCNGC | 3 cut(s) | 476, 479, 813 |
| FokI | GGATG | 3 cut(s) | 23, 206, 812 |
| FriOI | GRGCYC | 1 cut(s) | 207 |
| Fsp4HI | GCNGC | 3 cut(s) | 476, 479, 813 |
| FspAI | RTGCGCAY | 1 cut(s) | 699 |
| FspBI | CTAG | 5 cut(s) | 116, 363, 414, 435, 633 |
| FspI | TGCGCA | 1 cut(s) | 699 |
| GlaI | GCGC | 4 cut(s) | 63, 168, 668, 699 |
| GluI | GCNGC | 3 cut(s) | 476, 479, 813 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 2 cut(s) | 274, 439 |
| HhaI | GCGC | 4 cut(s) | 64, 169, 669, 700 |
| Hin1II | CATG | 6 cut(s) | 242, 362, 609, 682, 704, 766 |
| Hin6I | GCGC | 4 cut(s) | 62, 167, 667, 698 |
| HinP1I | GCGC | 4 cut(s) | 62, 167, 667, 698 |
| HindIII | AAGCTT | 1 cut(s) | 510 |
| HinfI | GANTC | 4 cut(s) | 85, 145, 197, 805 |
| HphI | GGTGA | 2 cut(s) | 347, 514 |
| Hpy166II | GTNNAC | 1 cut(s) | 92 |
| Hpy188I | TCNGA | 6 cut(s) | 84, 298, 388, 411, 532, 778 |
| Hpy188III | TCNNGA | 1 cut(s) | 8 |
| Hpy8I | GTNNAC | 1 cut(s) | 92 |
| HpyAV | CCTTC | 3 cut(s) | 61, 499, 527 |
| HpyCH4III | ACNGT | 2 cut(s) | 96, 626 |
| HpyCH4V | TGCA | 8 cut(s) | 30, 42, 50, 242, 330, 478, 682, 812 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 27, 436 |
| HpyF3I | CTNAG | 3 cut(s) | 17, 81, 849 |
| Hsp92II | CATG | 6 cut(s) | 242, 362, 609, 682, 704, 766 |
| HspAI | GCGC | 4 cut(s) | 62, 167, 667, 698 |
| Kzo9I | GATC | 3 cut(s) | 4, 259, 342 |
| LmnI | GCTCC | 1 cut(s) | 210 |
| LpnPI | CCDG | 4 cut(s) | 7, 44, 234, 698 |
| Lsp1109I | GCAGC | 3 cut(s) | 462, 490, 824 |
| LweI | GCATC | 5 cut(s) | 37, 45, 178, 685, 712 |
| MaeI | CTAG | 5 cut(s) | 116, 363, 414, 435, 633 |
| MaeIII | GTNAC | 3 cut(s) | 787, 802, 829 |
| MalI | GATC | 3 cut(s) | 6, 261, 344 |
| MboI | GATC | 3 cut(s) | 4, 259, 342 |
| MboII | GAAGA | 3 cut(s) | 154, 631, 728 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MhlI | GDGCHC | 1 cut(s) | 207 |
| MluCI | AATT | 7 cut(s) | 25, 292, 301, 458, 556, 705, 780 |
| MlyI | GAGTC | 2 cut(s) | 191, 799 |
| MnlI | CCTC | 6 cut(s) | 26, 263, 346, 408, 478, 565 |
| MseI | TTAA | 1 cut(s) | 819 |
| Mva1269I | GAATGC | 1 cut(s) | 850 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 27, 436 |
| NdeII | GATC | 3 cut(s) | 4, 259, 342 |
| NlaIII | CATG | 6 cut(s) | 242, 362, 609, 682, 704, 766 |
| NlaIV | GGNNCC | 3 cut(s) | 157, 206, 623 |
| NmuCI | GTSAC | 1 cut(s) | 802 |
| NsbI | TGCGCA | 1 cut(s) | 699 |
| NspI | RCATGY | 2 cut(s) | 242, 766 |
| NspV | TTCGAA | 1 cut(s) | 462 |
| PceI | AGGCCT | 1 cut(s) | 439 |
| PciI | ACATGT | 1 cut(s) | 762 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 206 |
| PctI | GAATGC | 1 cut(s) | 850 |
| PfeI | GAWTC | 2 cut(s) | 85, 145 |
| PkrI | GCNGC | 3 cut(s) | 477, 480, 814 |
| PleI | GAGTC | 2 cut(s) | 191, 799 |
| PpsI | GAGTC | 2 cut(s) | 191, 799 |
| PscI | ACATGT | 1 cut(s) | 762 |
| PspN4I | GGNNCC | 3 cut(s) | 157, 206, 623 |
| PspPI | GGNCC | 2 cut(s) | 272, 622 |
| PstI | CTGCAG | 1 cut(s) | 480 |
| PstNI | CAGNNNCTG | 1 cut(s) | 64 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| SaqAI | TTAA | 1 cut(s) | 819 |
| SatI | GCNGC | 3 cut(s) | 476, 479, 813 |
| Sau3AI | GATC | 3 cut(s) | 4, 259, 342 |
| Sau96I | GGNCC | 2 cut(s) | 272, 622 |
| SchI | GAGTC | 2 cut(s) | 191, 799 |
| SduI | GDGCHC | 1 cut(s) | 207 |
| SetI | ASST | 3 cut(s) | 23, 514, 598 |
| SfaNI | GCATC | 5 cut(s) | 37, 45, 178, 685, 712 |
| SfcI | CTRYAG | 1 cut(s) | 476 |
| SfuI | TTCGAA | 1 cut(s) | 462 |
| SinI | GGWCC | 1 cut(s) | 622 |
| SpeI | ACTAGT | 2 cut(s) | 413, 632 |
| Sse9I | AATT | 7 cut(s) | 25, 292, 301, 458, 556, 705, 780 |
| SseBI | AGGCCT | 1 cut(s) | 439 |
| SsiI | CCGC | 3 cut(s) | 725, 792, 836 |
| SspMI | CTAG | 5 cut(s) | 116, 363, 414, 435, 633 |
| StuI | AGGCCT | 1 cut(s) | 439 |
| TaaI | ACNGT | 2 cut(s) | 96, 626 |
| TaqI | TCGA | 4 cut(s) | 268, 345, 462, 646 |
| TaqII | GACCGA | 1 cut(s) | 270 |
| TasI | AATT | 7 cut(s) | 25, 292, 301, 458, 556, 705, 780 |
| TfiI | GAWTC | 2 cut(s) | 85, 145 |
| Tru1I | TTAA | 1 cut(s) | 819 |
| Tru9I | TTAA | 1 cut(s) | 819 |
| TseFI | GTSAC | 1 cut(s) | 802 |
| TseI | GCWGC | 3 cut(s) | 475, 478, 812 |
| Tsp45I | GTSAC | 1 cut(s) | 802 |
| TspDTI | ATGAA | 3 cut(s) | 137, 362, 542 |
| VpaK11BI | GGWCC | 1 cut(s) | 622 |
| XapI | RAATTY | 3 cut(s) | 292, 458, 705 |
| XceI | RCATGY | 2 cut(s) | 242, 766 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 282 |
| XspI | CTAG | 5 cut(s) | 116, 363, 414, 435, 633 |