ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 836 |
| AccB1I | GGYRCC | 1 cut(s) | 246 |
| AccI | GTMKAC | 2 cut(s) | 166, 228 |
| AccII | CGCG | 1 cut(s) | 218 |
| AciI | CCGC | 2 cut(s) | 697, 860 |
| AclI | AACGTT | 2 cut(s) | 577, 878 |
| AclWI | GGATC | 3 cut(s) | 14, 78, 375 |
| AcyI | GRCGYC | 1 cut(s) | 146 |
| AfaI | GTAC | 2 cut(s) | 215, 850 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 109, 493, 703 |
| AflII | CTTAAG | 1 cut(s) | 683 |
| AgsI | TTSAA | 3 cut(s) | 79, 443, 830 |
| AhlI | ACTAGT | 2 cut(s) | 223, 551 |
| AjiI | CACGTC | 1 cut(s) | 54 |
| AjnI | CCWGG | 1 cut(s) | 231 |
| AluBI | AGCT | 4 cut(s) | 302, 311, 423, 674 |
| AluI | AGCT | 4 cut(s) | 302, 311, 423, 674 |
| Alw26I | GTCTC | 1 cut(s) | 622 |
| AlwI | GGATC | 3 cut(s) | 14, 78, 375 |
| AoxI | GGCC | 1 cut(s) | 38 |
| ApeKI | GCWGC | 2 cut(s) | 308, 454 |
| AspS9I | GGNCC | 2 cut(s) | 39, 694 |
| AsuC2I | CCSGG | 1 cut(s) | 42 |
| AsuHPI | GGTGA | 2 cut(s) | 134, 476 |
| AsuII | TTCGAA | 1 cut(s) | 533 |
| AvaII | GGWCC | 1 cut(s) | 694 |
| BaeGI | GKGCMC | 1 cut(s) | 251 |
| BanI | GGYRCC | 1 cut(s) | 246 |
| BbvI | GCAGC | 2 cut(s) | 320, 441 |
| BccI | CCATC | 2 cut(s) | 39, 791 |
| BceAI | ACGGC | 1 cut(s) | 53 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 297, 331 |
| BciT130I | CCWGG | 1 cut(s) | 233 |
| BcnI | CCSGG | 1 cut(s) | 42 |
| BcoDI | GTCTC | 1 cut(s) | 622 |
| BcuI | ACTAGT | 2 cut(s) | 223, 551 |
| BfaI | CTAG | 3 cut(s) | 224, 357, 552 |
| BfmI | CTRYAG | 1 cut(s) | 163 |
| BfrI | CTTAAG | 1 cut(s) | 683 |
| BfuAI | ACCTGC | 1 cut(s) | 836 |
| BglII | AGATCT | 1 cut(s) | 135 |
| BisI | GCNGC | 2 cut(s) | 309, 455 |
| BlsI | GCNGC | 2 cut(s) | 310, 456 |
| Bme1390I | CCNGG | 2 cut(s) | 42, 233 |
| Bme18I | GGWCC | 1 cut(s) | 694 |
| BmgBI | CACGTC | 1 cut(s) | 54 |
| BmgT120I | GGNCC | 2 cut(s) | 39, 694 |
| BmiI | GGNNCC | 2 cut(s) | 248, 695 |
| BmrFI | CCNGG | 2 cut(s) | 42, 233 |
| BmrI | ACTGGG | 1 cut(s) | 929 |
| BmsI | GCATC | 5 cut(s) | 177, 193, 466, 556, 847 |
| BmuI | ACTGGG | 1 cut(s) | 929 |
| BoxI | GACNNNNGTC | 1 cut(s) | 634 |
| Bpu14I | TTCGAA | 1 cut(s) | 533 |
| BpuMI | CCSGG | 1 cut(s) | 42 |
| BsaHI | GRCGYC | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 3 cut(s) | 107, 170, 232 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 649, 679, 863, 893 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 109, 493, 703 |
| Bse1I | ACTGG | 1 cut(s) | 935 |
| BseBI | CCWGG | 1 cut(s) | 233 |
| BseDI | CCNNGG | 3 cut(s) | 107, 170, 232 |
| BseGI | GGATG | 3 cut(s) | 69, 571, 796 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 109, 493, 703 |
| BseMII | CTCAG | 2 cut(s) | 282, 350 |
| BseNI | ACTGG | 1 cut(s) | 935 |
| BseRI | GAGGAG | 1 cut(s) | 924 |
| BseSI | GKGCMC | 1 cut(s) | 251 |
| BseXI | GCAGC | 2 cut(s) | 320, 441 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshFI | GGCC | 1 cut(s) | 40 |
| BshNI | GGYRCC | 1 cut(s) | 246 |
| BsiSI | CCGG | 1 cut(s) | 42 |
| BslFI | GGGAC | 2 cut(s) | 386, 707 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 109, 493, 703 |
| BsmAI | GTCTC | 1 cut(s) | 622 |
| BsmFI | GGGAC | 2 cut(s) | 386, 707 |
| BsnI | GGCC | 1 cut(s) | 40 |
| Bsp119I | TTCGAA | 1 cut(s) | 533 |
| Bsp1286I | GDGCHC | 1 cut(s) | 251 |
| Bsp143I | GATC | 4 cut(s) | 6, 70, 135, 367 |
| Bsp19I | CCATGG | 1 cut(s) | 107 |
| BspACI | CCGC | 2 cut(s) | 697, 860 |
| BspANI | GGCC | 1 cut(s) | 40 |
| BspCNI | CTCAG | 2 cut(s) | 281, 349 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspHI | TCATGA | 2 cut(s) | 460, 472 |
| BspLI | GGNNCC | 2 cut(s) | 248, 695 |
| BspMI | ACCTGC | 1 cut(s) | 836 |
| BspPI | GGATC | 3 cut(s) | 14, 78, 375 |
| BspT104I | TTCGAA | 1 cut(s) | 533 |
| BspT107I | GGYRCC | 1 cut(s) | 246 |
| BspTI | CTTAAG | 1 cut(s) | 683 |
| BsrI | ACTGG | 1 cut(s) | 935 |
| BssECI | CCNNGG | 3 cut(s) | 107, 170, 232 |
| BssMI | GATC | 4 cut(s) | 6, 70, 135, 367 |
| BssNI | GRCGYC | 1 cut(s) | 146 |
| BssT1I | CCWWGG | 2 cut(s) | 107, 170 |
| Bst2UI | CCWGG | 1 cut(s) | 233 |
| Bst4CI | ACNGT | 2 cut(s) | 164, 651 |
| Bst6I | CTCTTC | 1 cut(s) | 636 |
| BstACI | GRCGYC | 1 cut(s) | 146 |
| BstAFI | CTTAAG | 1 cut(s) | 683 |
| BstBI | TTCGAA | 1 cut(s) | 533 |
| BstC8I | GCNNGC | 4 cut(s) | 104, 144, 666, 885 |
| BstDEI | CTNAG | 2 cut(s) | 268, 336 |
| BstDSI | CCRYGG | 1 cut(s) | 107 |
| BstF5I | GGATG | 3 cut(s) | 69, 571, 796 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstKTI | GATC | 4 cut(s) | 9, 73, 138, 370 |
| BstMAI | GTCTC | 1 cut(s) | 622 |
| BstMBI | GATC | 4 cut(s) | 6, 70, 135, 367 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 308, 349, 566 |
| BstNI | CCWGG | 1 cut(s) | 233 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 634 |
| BstSCI | CCNGG | 2 cut(s) | 40, 231 |
| BstSFI | CTRYAG | 1 cut(s) | 163 |
| BstSLI | GKGCMC | 1 cut(s) | 251 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstV1I | GCAGC | 2 cut(s) | 320, 441 |
| BstX2I | RGATCY | 3 cut(s) | 6, 70, 135 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 258 |
| BstYI | RGATCY | 3 cut(s) | 6, 70, 135 |
| BsuRI | GGCC | 1 cut(s) | 40 |
| BtgI | CCRYGG | 1 cut(s) | 107 |
| BtrI | CACGTC | 1 cut(s) | 54 |
| BtsCI | GGATG | 3 cut(s) | 69, 571, 796 |
| BveI | ACCTGC | 1 cut(s) | 836 |
| Cac8I | GCNNGC | 4 cut(s) | 104, 144, 666, 885 |
| CciI | TCATGA | 2 cut(s) | 460, 472 |
| Cfr13I | GGNCC | 2 cut(s) | 39, 694 |
| CseI | GACGC | 2 cut(s) | 135, 329 |
| Csp6I | GTAC | 2 cut(s) | 214, 849 |
| CviAII | CATG | 5 cut(s) | 108, 258, 461, 473, 703 |
| CviQI | GTAC | 2 cut(s) | 214, 849 |
| DdeI | CTNAG | 2 cut(s) | 268, 336 |
| DpnI | GATC | 4 cut(s) | 8, 72, 137, 369 |
| DpnII | GATC | 4 cut(s) | 6, 70, 135, 367 |
| Eam1104I | CTCTTC | 1 cut(s) | 636 |
| EarI | CTCTTC | 1 cut(s) | 636 |
| Eco130I | CCWWGG | 2 cut(s) | 107, 170 |
| Eco47I | GGWCC | 1 cut(s) | 694 |
| EcoRII | CCWGG | 1 cut(s) | 231 |
| EcoT14I | CCWWGG | 2 cut(s) | 107, 170 |
| EcoT22I | ATGCAT | 1 cut(s) | 208 |
| ErhI | CCWWGG | 2 cut(s) | 107, 170 |
| FaeI | CATG | 5 cut(s) | 111, 261, 464, 476, 706 |
| FaqI | GGGAC | 2 cut(s) | 386, 707 |
| FatI | CATG | 5 cut(s) | 107, 257, 460, 472, 702 |
| FblI | GTMKAC | 2 cut(s) | 166, 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 309, 455 |
| FokI | GGATG | 3 cut(s) | 76, 578, 803 |
| Fsp4HI | GCNGC | 2 cut(s) | 309, 455 |
| FspBI | CTAG | 3 cut(s) | 224, 357, 552 |
| GluI | GCNGC | 2 cut(s) | 309, 455 |
| HaeIII | GGCC | 1 cut(s) | 40 |
| HapII | CCGG | 1 cut(s) | 42 |
| HgaI | GACGC | 2 cut(s) | 135, 329 |
| Hin1I | GRCGYC | 1 cut(s) | 146 |
| Hin1II | CATG | 5 cut(s) | 111, 261, 464, 476, 706 |
| HindIII | AAGCTT | 1 cut(s) | 672 |
| HinfI | GANTC | 6 cut(s) | 16, 181, 266, 443, 658, 806 |
| HpaII | CCGG | 1 cut(s) | 42 |
| HphI | GGTGA | 2 cut(s) | 134, 476 |
| Hpy166II | GTNNAC | 3 cut(s) | 167, 229, 484 |
| Hpy188III | TCNNGA | 3 cut(s) | 13, 461, 473 |
| Hpy8I | GTNNAC | 3 cut(s) | 167, 229, 484 |
| Hpy99I | CGWCG | 1 cut(s) | 151 |
| HpyAV | CCTTC | 3 cut(s) | 73, 683, 715 |
| HpyCH4III | ACNGT | 2 cut(s) | 164, 651 |
| HpyCH4IV | ACGT | 4 cut(s) | 53, 431, 577, 878 |
| HpyCH4V | TGCA | 4 cut(s) | 190, 206, 457, 883 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 308, 349, 566 |
| HpyF3I | CTNAG | 2 cut(s) | 268, 336 |
| HpySE526I | ACGT | 4 cut(s) | 53, 431, 577, 878 |
| Hsp92I | GRCGYC | 1 cut(s) | 146 |
| Hsp92II | CATG | 5 cut(s) | 111, 261, 464, 476, 706 |
| Kzo9I | GATC | 4 cut(s) | 6, 70, 135, 367 |
| Lsp1109I | GCAGC | 2 cut(s) | 320, 441 |
| LweI | GCATC | 5 cut(s) | 177, 193, 466, 556, 847 |
| MaeI | CTAG | 3 cut(s) | 224, 357, 552 |
| MaeII | ACGT | 4 cut(s) | 53, 431, 577, 878 |
| MaeIII | GTNAC | 3 cut(s) | 122, 263, 902 |
| MalI | GATC | 4 cut(s) | 8, 72, 137, 369 |
| MboI | GATC | 4 cut(s) | 6, 70, 135, 367 |
| MboII | GAAGA | 3 cut(s) | 547, 550, 653 |
| MflI | RGATCY | 3 cut(s) | 6, 70, 135 |
| MhlI | GDGCHC | 1 cut(s) | 251 |
| MluCI | AATT | 2 cut(s) | 606, 820 |
| MlyI | GAGTC | 2 cut(s) | 260, 667 |
| MmeI | TCCRAC | 9 cut(s) | 48, 129, 138, 156, 297, 392, 543, 603, 618 |
| Mph1103I | ATGCAT | 1 cut(s) | 208 |
| MseI | TTAA | 4 cut(s) | 129, 435, 588, 684 |
| MslI | CAYNNNNRTG | 1 cut(s) | 256 |
| MspCI | CTTAAG | 1 cut(s) | 683 |
| MspI | CCGG | 1 cut(s) | 42 |
| MspR9I | CCNGG | 2 cut(s) | 42, 233 |
| MvaI | CCWGG | 1 cut(s) | 233 |
| MvnI | CGCG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 308, 349, 566 |
| NciI | CCSGG | 1 cut(s) | 42 |
| NcoI | CCATGG | 1 cut(s) | 107 |
| NdeII | GATC | 4 cut(s) | 6, 70, 135, 367 |
| NlaIII | CATG | 5 cut(s) | 111, 261, 464, 476, 706 |
| NlaIV | GGNNCC | 2 cut(s) | 248, 695 |
| NmuCI | GTSAC | 2 cut(s) | 122, 263 |
| NsiI | ATGCAT | 1 cut(s) | 208 |
| NspV | TTCGAA | 1 cut(s) | 533 |
| PagI | TCATGA | 2 cut(s) | 460, 472 |
| PfeI | GAWTC | 4 cut(s) | 16, 181, 443, 806 |
| PkrI | GCNGC | 2 cut(s) | 310, 456 |
| PleI | GAGTC | 2 cut(s) | 260, 666 |
| PpsI | GAGTC | 2 cut(s) | 260, 666 |
| PshAI | GACNNNNGTC | 1 cut(s) | 634 |
| Psp1406I | AACGTT | 2 cut(s) | 577, 878 |
| Psp6I | CCWGG | 1 cut(s) | 231 |
| PspGI | CCWGG | 1 cut(s) | 231 |
| PspN4I | GGNNCC | 2 cut(s) | 248, 695 |
| PspPI | GGNCC | 2 cut(s) | 39, 694 |
| PsuI | RGATCY | 3 cut(s) | 6, 70, 135 |
| RsaI | GTAC | 2 cut(s) | 215, 850 |
| RsaNI | GTAC | 2 cut(s) | 214, 849 |
| RseI | CAYNNNNRTG | 1 cut(s) | 256 |
| SaqAI | TTAA | 4 cut(s) | 129, 435, 588, 684 |
| SatI | GCNGC | 2 cut(s) | 309, 455 |
| Sau3AI | GATC | 4 cut(s) | 6, 70, 135, 367 |
| Sau96I | GGNCC | 2 cut(s) | 39, 694 |
| SchI | GAGTC | 2 cut(s) | 260, 667 |
| ScrFI | CCNGG | 2 cut(s) | 42, 233 |
| SduI | GDGCHC | 1 cut(s) | 251 |
| SfaNI | GCATC | 5 cut(s) | 177, 193, 466, 556, 847 |
| SfcI | CTRYAG | 1 cut(s) | 163 |
| SfuI | TTCGAA | 1 cut(s) | 533 |
| SinI | GGWCC | 1 cut(s) | 694 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 256 |
| SmlI | CTYRAG | 1 cut(s) | 683 |
| SmoI | CTYRAG | 1 cut(s) | 683 |
| SpeI | ACTAGT | 2 cut(s) | 223, 551 |
| Sse9I | AATT | 2 cut(s) | 606, 820 |
| SsiI | CCGC | 2 cut(s) | 697, 860 |
| SspI | AATATT | 1 cut(s) | 920 |
| SspMI | CTAG | 3 cut(s) | 224, 357, 552 |
| StyD4I | CCNGG | 2 cut(s) | 40, 231 |
| StyI | CCWWGG | 2 cut(s) | 107, 170 |
| TaaI | ACNGT | 2 cut(s) | 164, 651 |
| TaiI | ACGT | 4 cut(s) | 56, 434, 580, 881 |
| TaqI | TCGA | 1 cut(s) | 533 |
| TaqII | GACCGA | 1 cut(s) | 517 |
| TasI | AATT | 2 cut(s) | 606, 820 |
| TfiI | GAWTC | 4 cut(s) | 16, 181, 443, 806 |
| Tru1I | TTAA | 4 cut(s) | 129, 435, 588, 684 |
| Tru9I | TTAA | 4 cut(s) | 129, 435, 588, 684 |
| TseFI | GTSAC | 2 cut(s) | 122, 263 |
| TseI | GCWGC | 2 cut(s) | 308, 454 |
| Tsp45I | GTSAC | 2 cut(s) | 122, 263 |
| TspDTI | ATGAA | 3 cut(s) | 704, 739, 930 |
| TspGWI | ACGGA | 1 cut(s) | 921 |
| Vha464I | CTTAAG | 1 cut(s) | 683 |
| VpaK11BI | GGWCC | 1 cut(s) | 694 |
| XmiI | GTMKAC | 2 cut(s) | 166, 228 |
| XspI | CTAG | 3 cut(s) | 224, 357, 552 |
| Zsp2I | ATGCAT | 1 cut(s) | 208 |