ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 443, 698 |
| AccI | GTMKAC | 1 cut(s) | 608 |
| AccII | CGCG | 1 cut(s) | 1070 |
| AciI | CCGC | 5 cut(s) | 197, 361, 440, 481, 1070 |
| AclWI | GGATC | 2 cut(s) | 357, 975 |
| AcsI | RAATTY | 3 cut(s) | 555, 753, 901 |
| AcuI | CTGAAG | 3 cut(s) | 80, 221, 488 |
| AcvI | CACGTG | 1 cut(s) | 661 |
| AfaI | GTAC | 1 cut(s) | 712 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 399, 582 |
| AgsI | TTSAA | 9 cut(s) | 128, 137, 232, 421, 634, 758, 763, 841, 958 |
| AjnI | CCWGG | 2 cut(s) | 204, 575 |
| AluBI | AGCT | 5 cut(s) | 142, 235, 290, 380, 895 |
| AluI | AGCT | 5 cut(s) | 142, 235, 290, 380, 895 |
| Alw21I | GWGCWC | 1 cut(s) | 74 |
| Alw26I | GTCTC | 4 cut(s) | 101, 301, 466, 1073 |
| AlwI | GGATC | 2 cut(s) | 357, 975 |
| Ama87I | CYCGRG | 1 cut(s) | 51 |
| AoxI | GGCC | 2 cut(s) | 202, 790 |
| ApoI | RAATTY | 3 cut(s) | 555, 753, 901 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 845 |
| AspLEI | GCGC | 2 cut(s) | 58, 259 |
| AspS9I | GGNCC | 4 cut(s) | 202, 455, 598, 790 |
| AsuC2I | CCSGG | 2 cut(s) | 491, 788 |
| AsuHPI | GGTGA | 2 cut(s) | 418, 691 |
| AsuII | TTCGAA | 1 cut(s) | 639 |
| AvaI | CYCGRG | 1 cut(s) | 51 |
| AvaII | GGWCC | 2 cut(s) | 455, 598 |
| AxyI | CCTNAGG | 1 cut(s) | 154 |
| BanII | GRGCYC | 1 cut(s) | 213 |
| BbrPI | CACGTG | 1 cut(s) | 661 |
| Bbv12I | GWGCWC | 1 cut(s) | 74 |
| BccI | CCATC | 6 cut(s) | 307, 397, 467, 534, 853, 880 |
| BciT130I | CCWGG | 2 cut(s) | 206, 577 |
| BcnI | CCSGG | 2 cut(s) | 491, 788 |
| BcoDI | GTCTC | 4 cut(s) | 101, 301, 466, 1073 |
| BfaI | CTAG | 4 cut(s) | 377, 750, 822, 1028 |
| BfmI | CTRYAG | 1 cut(s) | 653 |
| BfoI | RGCGCY | 1 cut(s) | 59 |
| BfuAI | ACCTGC | 2 cut(s) | 443, 698 |
| BisI | GCNGC | 1 cut(s) | 362 |
| BlsI | GCNGC | 1 cut(s) | 363 |
| Bme1390I | CCNGG | 4 cut(s) | 206, 491, 577, 788 |
| Bme18I | GGWCC | 2 cut(s) | 455, 598 |
| BmeT110I | CYCGRG | 1 cut(s) | 51 |
| BmgT120I | GGNCC | 4 cut(s) | 202, 455, 598, 790 |
| BmiI | GGNNCC | 5 cut(s) | 203, 247, 457, 600, 791 |
| BmrFI | CCNGG | 4 cut(s) | 206, 491, 577, 788 |
| BmrI | ACTGGG | 1 cut(s) | 348 |
| BmsI | GCATC | 3 cut(s) | 31, 259, 268 |
| BmuI | ACTGGG | 1 cut(s) | 348 |
| BpmI | CTGGAG | 1 cut(s) | 881 |
| Bpu14I | TTCGAA | 1 cut(s) | 639 |
| BpuMI | CCSGG | 2 cut(s) | 491, 788 |
| BsaAI | YACGTR | 1 cut(s) | 661 |
| BsaBI | GATNNNNATC | 1 cut(s) | 348 |
| BsaI | GGTCTC | 1 cut(s) | 1073 |
| BsaJI | CCNNGG | 3 cut(s) | 205, 398, 787 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 399, 582 |
| Bse118I | RCCGGY | 1 cut(s) | 792 |
| Bse1I | ACTGG | 2 cut(s) | 343, 982 |
| Bse21I | CCTNAGG | 1 cut(s) | 154 |
| Bse8I | GATNNNNATC | 1 cut(s) | 348 |
| BseBI | CCWGG | 2 cut(s) | 206, 577 |
| BseDI | CCNNGG | 3 cut(s) | 205, 398, 787 |
| BseGI | GGATG | 3 cut(s) | 10, 408, 526 |
| BseJI | GATNNNNATC | 1 cut(s) | 348 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 399, 582 |
| BseMII | CTCAG | 1 cut(s) | 89 |
| BseNI | ACTGG | 2 cut(s) | 343, 982 |
| BseRI | GAGGAG | 2 cut(s) | 845, 932 |
| Bsh1236I | CGCG | 1 cut(s) | 1070 |
| BshFI | GGCC | 2 cut(s) | 204, 792 |
| BsiHKAI | GWGCWC | 1 cut(s) | 74 |
| BsiHKCI | CYCGRG | 1 cut(s) | 51 |
| BsiSI | CCGG | 3 cut(s) | 490, 787, 793 |
| BslFI | GGGAC | 3 cut(s) | 204, 441, 584 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 399, 582 |
| BsmAI | GTCTC | 4 cut(s) | 101, 301, 466, 1073 |
| BsmFI | GGGAC | 3 cut(s) | 204, 441, 584 |
| BsnI | GGCC | 2 cut(s) | 204, 792 |
| Bso31I | GGTCTC | 1 cut(s) | 1073 |
| BsoBI | CYCGRG | 1 cut(s) | 51 |
| Bsp119I | TTCGAA | 1 cut(s) | 639 |
| Bsp1286I | GDGCHC | 2 cut(s) | 74, 213 |
| Bsp143I | GATC | 3 cut(s) | 349, 738, 967 |
| Bsp19I | CCATGG | 1 cut(s) | 398 |
| BspACI | CCGC | 5 cut(s) | 197, 361, 440, 481, 1070 |
| BspANI | GGCC | 2 cut(s) | 204, 792 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BspFNI | CGCG | 1 cut(s) | 1070 |
| BspLI | GGNNCC | 5 cut(s) | 203, 247, 457, 600, 791 |
| BspMI | ACCTGC | 2 cut(s) | 443, 698 |
| BspPI | GGATC | 2 cut(s) | 357, 975 |
| BspT104I | TTCGAA | 1 cut(s) | 639 |
| BspTNI | GGTCTC | 1 cut(s) | 1073 |
| BsrFI | RCCGGY | 1 cut(s) | 792 |
| BsrI | ACTGG | 2 cut(s) | 343, 982 |
| BssAI | RCCGGY | 1 cut(s) | 792 |
| BssECI | CCNNGG | 3 cut(s) | 205, 398, 787 |
| BssMI | GATC | 3 cut(s) | 349, 738, 967 |
| BssT1I | CCWWGG | 1 cut(s) | 398 |
| Bst2UI | CCWGG | 2 cut(s) | 206, 577 |
| Bst4CI | ACNGT | 1 cut(s) | 1084 |
| Bst6I | CTCTTC | 1 cut(s) | 464 |
| BstBAI | YACGTR | 1 cut(s) | 661 |
| BstBI | TTCGAA | 1 cut(s) | 639 |
| BstC8I | GCNNGC | 2 cut(s) | 588, 794 |
| BstDEI | CTNAG | 4 cut(s) | 11, 75, 154, 618 |
| BstDSI | CCRYGG | 1 cut(s) | 398 |
| BstF5I | GGATG | 3 cut(s) | 10, 408, 526 |
| BstFNI | CGCG | 1 cut(s) | 1070 |
| BstH2I | RGCGCY | 1 cut(s) | 59 |
| BstHHI | GCGC | 2 cut(s) | 58, 259 |
| BstKTI | GATC | 3 cut(s) | 352, 741, 970 |
| BstMAI | GTCTC | 4 cut(s) | 101, 301, 466, 1073 |
| BstMBI | GATC | 3 cut(s) | 349, 738, 967 |
| BstNI | CCWGG | 2 cut(s) | 206, 577 |
| BstNSI | RCATGY | 3 cut(s) | 170, 332, 941 |
| BstSCI | CCNGG | 4 cut(s) | 204, 489, 575, 786 |
| BstSFI | CTRYAG | 1 cut(s) | 653 |
| BstUI | CGCG | 1 cut(s) | 1070 |
| Bsu36I | CCTNAGG | 1 cut(s) | 154 |
| BsuRI | GGCC | 2 cut(s) | 204, 792 |
| BtgI | CCRYGG | 1 cut(s) | 398 |
| BtgZI | GCGATG | 1 cut(s) | 553 |
| BtsCI | GGATG | 3 cut(s) | 10, 408, 526 |
| BtsI | GCAGTG | 1 cut(s) | 279 |
| BtsIMutI | CAGTG | 1 cut(s) | 279 |
| BveI | ACCTGC | 2 cut(s) | 443, 698 |
| Cac8I | GCNNGC | 2 cut(s) | 588, 794 |
| CfoI | GCGC | 2 cut(s) | 58, 259 |
| Cfr10I | RCCGGY | 1 cut(s) | 792 |
| Cfr13I | GGNCC | 4 cut(s) | 202, 455, 598, 790 |
| CseI | GACGC | 1 cut(s) | 1076 |
| Csp6I | GTAC | 1 cut(s) | 711 |
| CviAII | CATG | 9 cut(s) | 167, 329, 399, 718, 742, 938, 951, 1046, 1058 |
| CviQI | GTAC | 1 cut(s) | 711 |
| DdeI | CTNAG | 4 cut(s) | 11, 75, 154, 618 |
| DpnI | GATC | 3 cut(s) | 351, 740, 969 |
| DpnII | GATC | 3 cut(s) | 349, 738, 967 |
| Eam1104I | CTCTTC | 1 cut(s) | 464 |
| EarI | CTCTTC | 1 cut(s) | 464 |
| Eco130I | CCWWGG | 1 cut(s) | 398 |
| Eco24I | GRGCYC | 1 cut(s) | 213 |
| Eco31I | GGTCTC | 1 cut(s) | 1073 |
| Eco47I | GGWCC | 2 cut(s) | 455, 598 |
| Eco57I | CTGAAG | 3 cut(s) | 80, 221, 488 |
| Eco72I | CACGTG | 1 cut(s) | 661 |
| Eco81I | CCTNAGG | 1 cut(s) | 154 |
| Eco88I | CYCGRG | 1 cut(s) | 51 |
| EcoO109I | RGGNCCY | 2 cut(s) | 202, 455 |
| EcoRI | GAATTC | 2 cut(s) | 555, 753 |
| EcoRII | CCWGG | 2 cut(s) | 204, 575 |
| EcoT14I | CCWWGG | 1 cut(s) | 398 |
| EcoT38I | GRGCYC | 1 cut(s) | 213 |
| ErhI | CCWWGG | 1 cut(s) | 398 |
| FaeI | CATG | 9 cut(s) | 170, 332, 402, 721, 745, 941, 954, 1049, 1061 |
| FaqI | GGGAC | 3 cut(s) | 204, 441, 584 |
| FatI | CATG | 9 cut(s) | 166, 328, 398, 717, 741, 937, 950, 1045, 1057 |
| FauI | CCCGC | 3 cut(s) | 190, 474, 1063 |
| FauNDI | CATATG | 1 cut(s) | 700 |
| FblI | GTMKAC | 1 cut(s) | 608 |
| Fnu4HI | GCNGC | 1 cut(s) | 362 |
| FokI | GGATG | 3 cut(s) | 17, 415, 533 |
| FriOI | GRGCYC | 1 cut(s) | 213 |
| Fsp4HI | GCNGC | 1 cut(s) | 362 |
| FspBI | CTAG | 4 cut(s) | 377, 750, 822, 1028 |
| GlaI | GCGC | 2 cut(s) | 57, 258 |
| GluI | GCNGC | 1 cut(s) | 362 |
| GsuI | CTGGAG | 1 cut(s) | 881 |
| HaeII | RGCGCY | 1 cut(s) | 59 |
| HaeIII | GGCC | 2 cut(s) | 204, 792 |
| HapII | CCGG | 3 cut(s) | 490, 787, 793 |
| HgaI | GACGC | 1 cut(s) | 1076 |
| HhaI | GCGC | 2 cut(s) | 58, 259 |
| Hin1II | CATG | 9 cut(s) | 170, 332, 402, 721, 745, 941, 954, 1049, 1061 |
| Hin6I | GCGC | 2 cut(s) | 56, 257 |
| HinP1I | GCGC | 2 cut(s) | 56, 257 |
| HincII | GTYRAC | 2 cut(s) | 609, 626 |
| HindII | GTYRAC | 2 cut(s) | 609, 626 |
| HindIII | AAGCTT | 1 cut(s) | 233 |
| HinfI | GANTC | 4 cut(s) | 79, 294, 389, 427 |
| HpaII | CCGG | 3 cut(s) | 490, 787, 793 |
| HphI | GGTGA | 2 cut(s) | 418, 691 |
| Hpy166II | GTNNAC | 3 cut(s) | 86, 609, 626 |
| Hpy188I | TCNGA | 6 cut(s) | 78, 240, 432, 561, 856, 972 |
| Hpy188III | TCNNGA | 3 cut(s) | 189, 822, 898 |
| Hpy8I | GTNNAC | 3 cut(s) | 86, 609, 626 |
| HpyAV | CCTTC | 6 cut(s) | 55, 166, 404, 676, 769, 956 |
| HpyCH4III | ACNGT | 1 cut(s) | 1084 |
| HpyCH4IV | ACGT | 1 cut(s) | 660 |
| HpyCH4V | TGCA | 9 cut(s) | 24, 36, 164, 272, 332, 452, 745, 865, 1045 |
| HpyF3I | CTNAG | 4 cut(s) | 11, 75, 154, 618 |
| HpySE526I | ACGT | 1 cut(s) | 660 |
| Hsp92II | CATG | 9 cut(s) | 170, 332, 402, 721, 745, 941, 954, 1049, 1061 |
| HspAI | GCGC | 2 cut(s) | 56, 257 |
| KroI | GCCGGC | 1 cut(s) | 792 |
| KroNI | GCCGGC | 1 cut(s) | 794 |
| Kzo9I | GATC | 3 cut(s) | 349, 738, 967 |
| LmnI | GCTCC | 2 cut(s) | 147, 900 |
| LweI | GCATC | 3 cut(s) | 31, 259, 268 |
| MaeI | CTAG | 4 cut(s) | 377, 750, 822, 1028 |
| MaeII | ACGT | 1 cut(s) | 660 |
| MaeIII | GTNAC | 4 cut(s) | 371, 727, 946, 1087 |
| MalI | GATC | 3 cut(s) | 351, 740, 969 |
| MboI | GATC | 3 cut(s) | 349, 738, 967 |
| MboII | GAAGA | 5 cut(s) | 140, 457, 481, 748, 1073 |
| MfeI | CAATTG | 1 cut(s) | 758 |
| MhlI | GDGCHC | 2 cut(s) | 74, 213 |
| MluCI | AATT | 9 cut(s) | 19, 89, 123, 555, 753, 758, 797, 901, 1074 |
| MlyI | GAGTC | 1 cut(s) | 288 |
| MnlI | CCTC | 9 cut(s) | 20, 169, 406, 487, 612, 679, 772, 823, 910 |
| MroNI | GCCGGC | 1 cut(s) | 792 |
| MroXI | GAANNNNTTC | 1 cut(s) | 845 |
| MslI | CAYNNNNRTG | 2 cut(s) | 267, 1062 |
| MspI | CCGG | 3 cut(s) | 490, 787, 793 |
| MspR9I | CCNGG | 4 cut(s) | 206, 491, 577, 788 |
| MunI | CAATTG | 1 cut(s) | 758 |
| MvaI | CCWGG | 2 cut(s) | 206, 577 |
| MvnI | CGCG | 1 cut(s) | 1070 |
| NaeI | GCCGGC | 1 cut(s) | 794 |
| NciI | CCSGG | 2 cut(s) | 491, 788 |
| NcoI | CCATGG | 1 cut(s) | 398 |
| NdeI | CATATG | 1 cut(s) | 700 |
| NdeII | GATC | 3 cut(s) | 349, 738, 967 |
| NgoMIV | GCCGGC | 1 cut(s) | 792 |
| NlaIII | CATG | 9 cut(s) | 170, 332, 402, 721, 745, 941, 954, 1049, 1061 |
| NlaIV | GGNNCC | 5 cut(s) | 203, 247, 457, 600, 791 |
| NmuCI | GTSAC | 2 cut(s) | 371, 1087 |
| NspI | RCATGY | 3 cut(s) | 170, 332, 941 |
| NspV | TTCGAA | 1 cut(s) | 639 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 666 |
| PdiI | GCCGGC | 1 cut(s) | 794 |
| PdmI | GAANNNNTTC | 1 cut(s) | 845 |
| PfeI | GAWTC | 3 cut(s) | 79, 389, 427 |
| PfoI | TCCNGGA | 1 cut(s) | 489 |
| PkrI | GCNGC | 1 cut(s) | 363 |
| PleI | GAGTC | 1 cut(s) | 288 |
| PmaCI | CACGTG | 1 cut(s) | 661 |
| PmlI | CACGTG | 1 cut(s) | 661 |
| PpsI | GAGTC | 1 cut(s) | 288 |
| Ppu21I | YACGTR | 1 cut(s) | 661 |
| PpuMI | RGGWCCY | 1 cut(s) | 455 |
| Psp5II | RGGWCCY | 1 cut(s) | 455 |
| Psp6I | CCWGG | 2 cut(s) | 204, 575 |
| PspCI | CACGTG | 1 cut(s) | 661 |
| PspGI | CCWGG | 2 cut(s) | 204, 575 |
| PspN4I | GGNNCC | 5 cut(s) | 203, 247, 457, 600, 791 |
| PspPI | GGNCC | 4 cut(s) | 202, 455, 598, 790 |
| PspPPI | RGGWCCY | 1 cut(s) | 455 |
| RsaI | GTAC | 1 cut(s) | 712 |
| RsaNI | GTAC | 1 cut(s) | 711 |
| RseI | CAYNNNNRTG | 2 cut(s) | 267, 1062 |
| SalI | GTCGAC | 1 cut(s) | 607 |
| SatI | GCNGC | 1 cut(s) | 362 |
| Sau3AI | GATC | 3 cut(s) | 349, 738, 967 |
| Sau96I | GGNCC | 4 cut(s) | 202, 455, 598, 790 |
| SchI | GAGTC | 1 cut(s) | 288 |
| ScrFI | CCNGG | 4 cut(s) | 206, 491, 577, 788 |
| SduI | GDGCHC | 2 cut(s) | 74, 213 |
| SfaNI | GCATC | 3 cut(s) | 31, 259, 268 |
| SfcI | CTRYAG | 1 cut(s) | 653 |
| SfuI | TTCGAA | 1 cut(s) | 639 |
| SinI | GGWCC | 2 cut(s) | 455, 598 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 267, 1062 |
| Sse9I | AATT | 9 cut(s) | 19, 89, 123, 555, 753, 758, 797, 901, 1074 |
| SsiI | CCGC | 5 cut(s) | 197, 361, 440, 481, 1070 |
| SspMI | CTAG | 4 cut(s) | 377, 750, 822, 1028 |
| StyD4I | CCNGG | 4 cut(s) | 204, 489, 575, 786 |
| StyI | CCWWGG | 1 cut(s) | 398 |
| TaaI | ACNGT | 1 cut(s) | 1084 |
| TaiI | ACGT | 1 cut(s) | 663 |
| TaqI | TCGA | 3 cut(s) | 608, 639, 991 |
| TasI | AATT | 9 cut(s) | 19, 89, 123, 555, 753, 758, 797, 901, 1074 |
| TauI | GCSGC | 1 cut(s) | 364 |
| TfiI | GAWTC | 3 cut(s) | 79, 389, 427 |
| TscAI | CASTG | 1 cut(s) | 279 |
| TseFI | GTSAC | 2 cut(s) | 371, 1087 |
| Tsp45I | GTSAC | 2 cut(s) | 371, 1087 |
| TspDTI | ATGAA | 3 cut(s) | 885, 977, 1074 |
| TspGWI | ACGGA | 2 cut(s) | 134, 359 |
| TspRI | CASTG | 1 cut(s) | 279 |
| VpaK11BI | GGWCC | 2 cut(s) | 455, 598 |
| XapI | RAATTY | 3 cut(s) | 555, 753, 901 |
| XbaI | TCTAGA | 1 cut(s) | 821 |
| XceI | RCATGY | 3 cut(s) | 170, 332, 941 |
| XmiI | GTMKAC | 1 cut(s) | 608 |
| XmnI | GAANNNNTTC | 1 cut(s) | 845 |
| XspI | CTAG | 4 cut(s) | 377, 750, 822, 1028 |