ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 703 |
| AccI | GTMKAC | 1 cut(s) | 58 |
| AciI | CCGC | 2 cut(s) | 321, 869 |
| AclWI | GGATC | 3 cut(s) | 545, 553, 566 |
| AcoI | YGGCCR | 1 cut(s) | 585 |
| AcsI | RAATTY | 4 cut(s) | 181, 768, 963, 1202 |
| AcuI | CTGAAG | 1 cut(s) | 264 |
| AcvI | CACGTG | 1 cut(s) | 535 |
| AdeI | CACNNNGTG | 1 cut(s) | 1054 |
| AfaI | GTAC | 1 cut(s) | 661 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 713, 749 |
| AflII | CTTAAG | 1 cut(s) | 617 |
| AgsI | TTSAA | 6 cut(s) | 299, 329, 407, 773, 925, 1164 |
| AjnI | CCWGG | 3 cut(s) | 427, 562, 706 |
| AluBI | AGCT | 8 cut(s) | 86, 302, 698, 854, 890, 905, 992, 1133 |
| AluI | AGCT | 8 cut(s) | 86, 302, 698, 854, 890, 905, 992, 1133 |
| Alw21I | GWGCWC | 1 cut(s) | 534 |
| Alw26I | GTCTC | 1 cut(s) | 429 |
| AlwI | GGATC | 3 cut(s) | 545, 553, 566 |
| AoxI | GGCC | 4 cut(s) | 585, 866, 927, 1166 |
| ApeKI | GCWGC | 5 cut(s) | 8, 871, 1121, 1130, 1150 |
| ApoI | RAATTY | 4 cut(s) | 181, 768, 963, 1202 |
| AspS9I | GGNCC | 1 cut(s) | 866 |
| AsuC2I | CCSGG | 1 cut(s) | 1107 |
| AsuII | TTCGAA | 1 cut(s) | 800 |
| BaeGI | GKGCMC | 1 cut(s) | 845 |
| BamHI | GGATCC | 1 cut(s) | 558 |
| BanI | GGYRCC | 1 cut(s) | 703 |
| BbrPI | CACGTG | 1 cut(s) | 535 |
| BbsI | GAAGAC | 2 cut(s) | 246, 314 |
| Bbv12I | GWGCWC | 1 cut(s) | 534 |
| BbvI | GCAGC | 4 cut(s) | 858, 1108, 1142, 1162 |
| BccI | CCATC | 5 cut(s) | 431, 726, 774, 799, 1006 |
| BceAI | ACGGC | 1 cut(s) | 572 |
| BciT130I | CCWGG | 3 cut(s) | 429, 564, 708 |
| BciVI | GTATCC | 1 cut(s) | 729 |
| BcnI | CCSGG | 1 cut(s) | 1107 |
| BcoDI | GTCTC | 1 cut(s) | 429 |
| BfaI | CTAG | 4 cut(s) | 378, 434, 483, 600 |
| BfmI | CTRYAG | 1 cut(s) | 59 |
| BfrI | CTTAAG | 1 cut(s) | 617 |
| BfuI | GTATCC | 1 cut(s) | 729 |
| BisI | GCNGC | 7 cut(s) | 9, 321, 869, 872, 1122, 1131, 1151 |
| BlsI | GCNGC | 7 cut(s) | 10, 322, 870, 873, 1123, 1132, 1152 |
| BmcAI | AGTACT | 1 cut(s) | 661 |
| Bme1390I | CCNGG | 4 cut(s) | 429, 564, 708, 1107 |
| BmgT120I | GGNCC | 1 cut(s) | 866 |
| BmiI | GGNNCC | 3 cut(s) | 560, 608, 705 |
| BmrFI | CCNGG | 4 cut(s) | 429, 564, 708, 1107 |
| BmsI | GCATC | 1 cut(s) | 823 |
| BpiI | GAAGAC | 2 cut(s) | 246, 314 |
| BpmI | CTGGAG | 2 cut(s) | 411, 593 |
| Bpu14I | TTCGAA | 1 cut(s) | 800 |
| BpuMI | CCSGG | 1 cut(s) | 1107 |
| BsaAI | YACGTR | 1 cut(s) | 535 |
| BsaJI | CCNNGG | 2 cut(s) | 554, 562 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 409, 439 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 713, 749 |
| Bse118I | RCCGGY | 1 cut(s) | 583 |
| Bse1I | ACTGG | 4 cut(s) | 667, 930, 1145, 1169 |
| BseBI | CCWGG | 3 cut(s) | 429, 564, 708 |
| BseDI | CCNNGG | 2 cut(s) | 554, 562 |
| BseGI | GGATG | 6 cut(s) | 10, 37, 232, 739, 785, 1017 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 713, 749 |
| BseMII | CTCAG | 2 cut(s) | 110, 900 |
| BseNI | ACTGG | 4 cut(s) | 667, 930, 1145, 1169 |
| BseSI | GKGCMC | 1 cut(s) | 845 |
| BseX3I | CGGCCG | 1 cut(s) | 585 |
| BseXI | GCAGC | 4 cut(s) | 858, 1108, 1142, 1162 |
| BseYI | CCCAGC | 2 cut(s) | 813, 863 |
| BsgI | GTGCAG | 1 cut(s) | 1169 |
| Bsh1285I | CGRYCG | 1 cut(s) | 588 |
| BshFI | GGCC | 4 cut(s) | 587, 868, 929, 1168 |
| BshNI | GGYRCC | 1 cut(s) | 703 |
| BsiEI | CGRYCG | 1 cut(s) | 588 |
| BsiHKAI | GWGCWC | 1 cut(s) | 534 |
| BsiSI | CCGG | 2 cut(s) | 584, 1106 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 713, 749 |
| BsmAI | GTCTC | 1 cut(s) | 429 |
| BsmI | GAATGC | 1 cut(s) | 358 |
| BsnI | GGCC | 4 cut(s) | 587, 868, 929, 1168 |
| Bsp119I | TTCGAA | 1 cut(s) | 800 |
| Bsp1286I | GDGCHC | 2 cut(s) | 534, 845 |
| Bsp143I | GATC | 4 cut(s) | 101, 550, 558, 1060 |
| Bsp19I | CCATGG | 1 cut(s) | 554 |
| BspACI | CCGC | 2 cut(s) | 321, 869 |
| BspANI | GGCC | 4 cut(s) | 587, 868, 929, 1168 |
| BspCNI | CTCAG | 2 cut(s) | 111, 899 |
| BspLI | GGNNCC | 3 cut(s) | 560, 608, 705 |
| BspPI | GGATC | 3 cut(s) | 545, 553, 566 |
| BspT104I | TTCGAA | 1 cut(s) | 800 |
| BspT107I | GGYRCC | 1 cut(s) | 703 |
| BspTI | CTTAAG | 1 cut(s) | 617 |
| BsrFI | RCCGGY | 1 cut(s) | 583 |
| BsrI | ACTGG | 4 cut(s) | 667, 930, 1145, 1169 |
| BssAI | RCCGGY | 1 cut(s) | 583 |
| BssECI | CCNNGG | 2 cut(s) | 554, 562 |
| BssMI | GATC | 4 cut(s) | 101, 550, 558, 1060 |
| BssT1I | CCWWGG | 1 cut(s) | 554 |
| Bst2UI | CCWGG | 3 cut(s) | 429, 564, 708 |
| Bst4CI | ACNGT | 2 cut(s) | 453, 680 |
| Bst6I | CTCTTC | 2 cut(s) | 72, 378 |
| BstAFI | CTTAAG | 1 cut(s) | 617 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1064 |
| BstBAI | YACGTR | 1 cut(s) | 535 |
| BstBI | TTCGAA | 1 cut(s) | 800 |
| BstC8I | GCNNGC | 4 cut(s) | 443, 585, 654, 845 |
| BstDEI | CTNAG | 4 cut(s) | 119, 720, 886, 1023 |
| BstDSI | CCRYGG | 1 cut(s) | 554 |
| BstF5I | GGATG | 6 cut(s) | 10, 37, 232, 739, 785, 1017 |
| BstKTI | GATC | 4 cut(s) | 104, 553, 561, 1063 |
| BstMAI | GTCTC | 1 cut(s) | 429 |
| BstMBI | GATC | 4 cut(s) | 101, 550, 558, 1060 |
| BstMCI | CGRYCG | 1 cut(s) | 588 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 589, 653, 860, 896, 957, 1064, 1127, 1130, 1196 |
| BstNI | CCWGG | 3 cut(s) | 429, 564, 708 |
| BstNSI | RCATGY | 2 cut(s) | 445, 899 |
| BstSCI | CCNGG | 4 cut(s) | 427, 562, 706, 1105 |
| BstSFI | CTRYAG | 1 cut(s) | 59 |
| BstSLI | GKGCMC | 1 cut(s) | 845 |
| BstV1I | GCAGC | 4 cut(s) | 858, 1108, 1142, 1162 |
| BstV2I | GAAGAC | 2 cut(s) | 246, 314 |
| BstX2I | RGATCY | 1 cut(s) | 558 |
| BstYI | RGATCY | 1 cut(s) | 558 |
| BstZI | CGGCCG | 1 cut(s) | 585 |
| BsuI | GTATCC | 1 cut(s) | 729 |
| BsuRI | GGCC | 4 cut(s) | 587, 868, 929, 1168 |
| BtgI | CCRYGG | 1 cut(s) | 554 |
| BtsCI | GGATG | 6 cut(s) | 10, 37, 232, 739, 785, 1017 |
| BtsI | GCAGTG | 2 cut(s) | 943, 1182 |
| BtsIMutI | CAGTG | 4 cut(s) | 449, 943, 1152, 1182 |
| Cac8I | GCNNGC | 4 cut(s) | 443, 585, 654, 845 |
| Cfr10I | RCCGGY | 1 cut(s) | 583 |
| Cfr13I | GGNCC | 1 cut(s) | 866 |
| Csp6I | GTAC | 1 cut(s) | 660 |
| CviAII | CATG | 9 cut(s) | 114, 238, 442, 555, 632, 713, 776, 896, 1064 |
| CviQI | GTAC | 1 cut(s) | 660 |
| DdeI | CTNAG | 4 cut(s) | 119, 720, 886, 1023 |
| DpnI | GATC | 4 cut(s) | 103, 552, 560, 1062 |
| DpnII | GATC | 4 cut(s) | 101, 550, 558, 1060 |
| DraIII | CACNNNGTG | 1 cut(s) | 1054 |
| EaeI | YGGCCR | 1 cut(s) | 585 |
| EagI | CGGCCG | 1 cut(s) | 585 |
| Eam1104I | CTCTTC | 2 cut(s) | 72, 378 |
| EarI | CTCTTC | 2 cut(s) | 72, 378 |
| EclXI | CGGCCG | 1 cut(s) | 585 |
| Eco130I | CCWWGG | 1 cut(s) | 554 |
| Eco32I | GATATC | 2 cut(s) | 976, 1215 |
| Eco52I | CGGCCG | 1 cut(s) | 585 |
| Eco57I | CTGAAG | 1 cut(s) | 264 |
| Eco72I | CACGTG | 1 cut(s) | 535 |
| EcoRII | CCWGG | 3 cut(s) | 427, 562, 706 |
| EcoRV | GATATC | 2 cut(s) | 976, 1215 |
| EcoT14I | CCWWGG | 1 cut(s) | 554 |
| ErhI | CCWWGG | 1 cut(s) | 554 |
| FaeI | CATG | 9 cut(s) | 117, 241, 445, 558, 635, 716, 779, 899, 1067 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 383, 415 |
| FatI | CATG | 9 cut(s) | 113, 237, 441, 554, 631, 712, 775, 895, 1063 |
| FblI | GTMKAC | 1 cut(s) | 58 |
| Fnu4HI | GCNGC | 7 cut(s) | 9, 321, 869, 872, 1122, 1131, 1151 |
| FokI | GGATG | 6 cut(s) | 17, 44, 239, 726, 792, 1024 |
| Fsp4HI | GCNGC | 7 cut(s) | 9, 321, 869, 872, 1122, 1131, 1151 |
| FspBI | CTAG | 4 cut(s) | 378, 434, 483, 600 |
| GluI | GCNGC | 7 cut(s) | 9, 321, 869, 872, 1122, 1131, 1151 |
| GsaI | CCCAGC | 2 cut(s) | 817, 867 |
| GsuI | CTGGAG | 2 cut(s) | 411, 593 |
| HaeIII | GGCC | 4 cut(s) | 587, 868, 929, 1168 |
| HapII | CCGG | 2 cut(s) | 584, 1106 |
| Hin1II | CATG | 9 cut(s) | 117, 241, 445, 558, 635, 716, 779, 899, 1067 |
| HindIII | AAGCTT | 2 cut(s) | 84, 903 |
| HinfI | GANTC | 5 cut(s) | 64, 187, 797, 941, 1180 |
| HpaII | CCGG | 2 cut(s) | 584, 1106 |
| Hpy166II | GTNNAC | 2 cut(s) | 59, 982 |
| Hpy188I | TCNGA | 4 cut(s) | 286, 417, 796, 1185 |
| Hpy188III | TCNNGA | 4 cut(s) | 434, 572, 830, 1218 |
| Hpy8I | GTNNAC | 2 cut(s) | 59, 982 |
| HpyAV | CCTTC | 5 cut(s) | 34, 151, 203, 227, 890 |
| HpyCH4III | ACNGT | 2 cut(s) | 453, 680 |
| HpyCH4IV | ACGT | 1 cut(s) | 534 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 589, 653, 860, 896, 957, 1064, 1127, 1130, 1196 |
| HpyF3I | CTNAG | 4 cut(s) | 119, 720, 886, 1023 |
| HpySE526I | ACGT | 1 cut(s) | 534 |
| Hsp92II | CATG | 9 cut(s) | 117, 241, 445, 558, 635, 716, 779, 899, 1067 |
| KroI | GCCGGC | 1 cut(s) | 583 |
| KroNI | GCCGGC | 1 cut(s) | 585 |
| Kzo9I | GATC | 4 cut(s) | 101, 550, 558, 1060 |
| LmnI | GCTCC | 1 cut(s) | 529 |
| Lsp1109I | GCAGC | 4 cut(s) | 858, 1108, 1142, 1162 |
| LweI | GCATC | 1 cut(s) | 823 |
| MaeI | CTAG | 4 cut(s) | 378, 434, 483, 600 |
| MaeII | ACGT | 1 cut(s) | 534 |
| MaeIII | GTNAC | 3 cut(s) | 109, 337, 683 |
| MalI | GATC | 4 cut(s) | 103, 552, 560, 1062 |
| MboI | GATC | 4 cut(s) | 101, 550, 558, 1060 |
| MboII | GAAGA | 7 cut(s) | 59, 190, 246, 319, 395, 814, 1084 |
| MflI | RGATCY | 1 cut(s) | 558 |
| MhlI | GDGCHC | 2 cut(s) | 534, 845 |
| MluCI | AATT | 9 cut(s) | 181, 214, 492, 760, 768, 963, 1036, 1087, 1202 |
| MlyI | GAGTC | 1 cut(s) | 58 |
| MroNI | GCCGGC | 1 cut(s) | 583 |
| MseI | TTAA | 2 cut(s) | 491, 618 |
| MslI | CAYNNNNRTG | 1 cut(s) | 636 |
| MspA1I | CMGCKG | 3 cut(s) | 871, 890, 1133 |
| MspCI | CTTAAG | 1 cut(s) | 617 |
| MspI | CCGG | 2 cut(s) | 584, 1106 |
| MspR9I | CCNGG | 4 cut(s) | 429, 564, 708, 1107 |
| Mva1269I | GAATGC | 1 cut(s) | 358 |
| MvaI | CCWGG | 3 cut(s) | 429, 564, 708 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 589, 653, 860, 896, 957, 1064, 1127, 1130, 1196 |
| NaeI | GCCGGC | 1 cut(s) | 585 |
| NciI | CCSGG | 1 cut(s) | 1107 |
| NcoI | CCATGG | 1 cut(s) | 554 |
| NdeII | GATC | 4 cut(s) | 101, 550, 558, 1060 |
| NgoMIV | GCCGGC | 1 cut(s) | 583 |
| NlaIII | CATG | 9 cut(s) | 117, 241, 445, 558, 635, 716, 779, 899, 1067 |
| NlaIV | GGNNCC | 3 cut(s) | 560, 608, 705 |
| NmuCI | GTSAC | 2 cut(s) | 337, 683 |
| NspI | RCATGY | 2 cut(s) | 445, 899 |
| NspV | TTCGAA | 1 cut(s) | 800 |
| PaeI | GCATGC | 1 cut(s) | 445 |
| PctI | GAATGC | 1 cut(s) | 358 |
| PdiI | GCCGGC | 1 cut(s) | 585 |
| PfeI | GAWTC | 4 cut(s) | 187, 797, 941, 1180 |
| PflFI | GACNNNGTC | 1 cut(s) | 421 |
| PkrI | GCNGC | 7 cut(s) | 10, 322, 870, 873, 1123, 1132, 1152 |
| PleI | GAGTC | 1 cut(s) | 58 |
| PmaCI | CACGTG | 1 cut(s) | 535 |
| PmlI | CACGTG | 1 cut(s) | 535 |
| PpsI | GAGTC | 1 cut(s) | 58 |
| Ppu21I | YACGTR | 1 cut(s) | 535 |
| Psp6I | CCWGG | 3 cut(s) | 427, 562, 706 |
| PspCI | CACGTG | 1 cut(s) | 535 |
| PspFI | CCCAGC | 2 cut(s) | 813, 863 |
| PspGI | CCWGG | 3 cut(s) | 427, 562, 706 |
| PspN4I | GGNNCC | 3 cut(s) | 560, 608, 705 |
| PspPI | GGNCC | 1 cut(s) | 866 |
| PsuI | RGATCY | 1 cut(s) | 558 |
| PsyI | GACNNNGTC | 1 cut(s) | 421 |
| PvuII | CAGCTG | 2 cut(s) | 890, 1133 |
| RsaI | GTAC | 1 cut(s) | 661 |
| RsaNI | GTAC | 1 cut(s) | 660 |
| RseI | CAYNNNNRTG | 1 cut(s) | 636 |
| SaqAI | TTAA | 2 cut(s) | 491, 618 |
| SatI | GCNGC | 7 cut(s) | 9, 321, 869, 872, 1122, 1131, 1151 |
| Sau3AI | GATC | 4 cut(s) | 101, 550, 558, 1060 |
| Sau96I | GGNCC | 1 cut(s) | 866 |
| ScaI | AGTACT | 1 cut(s) | 661 |
| SchI | GAGTC | 1 cut(s) | 58 |
| ScrFI | CCNGG | 4 cut(s) | 429, 564, 708, 1107 |
| SduI | GDGCHC | 2 cut(s) | 534, 845 |
| SfaNI | GCATC | 1 cut(s) | 823 |
| SfcI | CTRYAG | 1 cut(s) | 59 |
| SfuI | TTCGAA | 1 cut(s) | 800 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 636 |
| SmlI | CTYRAG | 1 cut(s) | 617 |
| SmoI | CTYRAG | 1 cut(s) | 617 |
| SphI | GCATGC | 1 cut(s) | 445 |
| Sse9I | AATT | 9 cut(s) | 181, 214, 492, 760, 768, 963, 1036, 1087, 1202 |
| SsiI | CCGC | 2 cut(s) | 321, 869 |
| SspI | AATATT | 1 cut(s) | 273 |
| SspMI | CTAG | 4 cut(s) | 378, 434, 483, 600 |
| StyD4I | CCNGG | 4 cut(s) | 427, 562, 706, 1105 |
| StyI | CCWWGG | 1 cut(s) | 554 |
| TaaI | ACNGT | 2 cut(s) | 453, 680 |
| TaiI | ACGT | 1 cut(s) | 537 |
| TaqI | TCGA | 2 cut(s) | 800, 914 |
| TasI | AATT | 9 cut(s) | 181, 214, 492, 760, 768, 963, 1036, 1087, 1202 |
| TatI | WGTACW | 1 cut(s) | 659 |
| TauI | GCSGC | 2 cut(s) | 323, 871 |
| TfiI | GAWTC | 4 cut(s) | 187, 797, 941, 1180 |
| Tru1I | TTAA | 2 cut(s) | 491, 618 |
| Tru9I | TTAA | 2 cut(s) | 491, 618 |
| TscAI | CASTG | 4 cut(s) | 456, 943, 1152, 1182 |
| TseFI | GTSAC | 2 cut(s) | 337, 683 |
| TseI | GCWGC | 5 cut(s) | 8, 871, 1121, 1130, 1150 |
| Tsp45I | GTSAC | 2 cut(s) | 337, 683 |
| TspDTI | ATGAA | 8 cut(s) | 48, 222, 246, 320, 365, 620, 984, 1007 |
| TspRI | CASTG | 4 cut(s) | 456, 943, 1152, 1182 |
| Tth111I | GACNNNGTC | 1 cut(s) | 421 |
| Vha464I | CTTAAG | 1 cut(s) | 617 |
| XapI | RAATTY | 4 cut(s) | 181, 768, 963, 1202 |
| XbaI | TCTAGA | 1 cut(s) | 433 |
| XceI | RCATGY | 2 cut(s) | 445, 899 |
| XmiI | GTMKAC | 1 cut(s) | 58 |
| XspI | CTAG | 4 cut(s) | 378, 434, 483, 600 |
| ZrmI | AGTACT | 1 cut(s) | 661 |