ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 240 |
| AccI | GTMKAC | 1 cut(s) | 331 |
| AccII | CGCG | 1 cut(s) | 151 |
| AciI | CCGC | 2 cut(s) | 96, 151 |
| AclI | AACGTT | 1 cut(s) | 394 |
| AcsI | RAATTY | 1 cut(s) | 254 |
| AcyI | GRCGYC | 1 cut(s) | 241 |
| AfaI | GTAC | 1 cut(s) | 367 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 176 |
| AflIII | ACRYGT | 1 cut(s) | 135 |
| AgsI | TTSAA | 2 cut(s) | 253, 428 |
| AjnI | CCWGG | 3 cut(s) | 325, 342, 509 |
| AluBI | AGCT | 3 cut(s) | 27, 227, 264 |
| AluI | AGCT | 3 cut(s) | 27, 227, 264 |
| Alw21I | GWGCWC | 2 cut(s) | 29, 525 |
| Alw26I | GTCTC | 1 cut(s) | 485 |
| ApeKI | GCWGC | 3 cut(s) | 143, 146, 224 |
| ApoI | RAATTY | 1 cut(s) | 254 |
| AseI | ATTAAT | 1 cut(s) | 197 |
| AspLEI | GCGC | 4 cut(s) | 64, 151, 243, 274 |
| AspS9I | GGNCC | 2 cut(s) | 103, 181 |
| AsuHPI | GGTGA | 1 cut(s) | 95 |
| AvaII | GGWCC | 2 cut(s) | 103, 181 |
| BanI | GGYRCC | 1 cut(s) | 240 |
| BanII | GRGCYC | 1 cut(s) | 29 |
| Bbv12I | GWGCWC | 2 cut(s) | 29, 525 |
| BbvI | GCAGC | 3 cut(s) | 155, 158, 236 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 9, 43 |
| BciT130I | CCWGG | 3 cut(s) | 327, 344, 511 |
| BcoDI | GTCTC | 1 cut(s) | 485 |
| BfaI | CTAG | 5 cut(s) | 228, 234, 303, 369, 527 |
| BfoI | RGCGCY | 3 cut(s) | 65, 244, 275 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BisI | GCNGC | 3 cut(s) | 144, 147, 225 |
| BlsI | GCNGC | 3 cut(s) | 145, 148, 226 |
| BmcAI | AGTACT | 1 cut(s) | 367 |
| Bme1390I | CCNGG | 3 cut(s) | 327, 344, 511 |
| Bme18I | GGWCC | 2 cut(s) | 103, 181 |
| BmgT120I | GGNCC | 2 cut(s) | 103, 181 |
| BmiI | GGNNCC | 2 cut(s) | 182, 242 |
| BmrFI | CCNGG | 3 cut(s) | 327, 344, 511 |
| BmsI | GCATC | 2 cut(s) | 83, 169 |
| BpmI | CTGGAG | 1 cut(s) | 326 |
| BsaAI | YACGTR | 2 cut(s) | 387, 437 |
| BsaHI | GRCGYC | 1 cut(s) | 241 |
| BsaI | GGTCTC | 1 cut(s) | 485 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 202, 232, 324, 354 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 176 |
| Bse1I | ACTGG | 1 cut(s) | 363 |
| BseBI | CCWGG | 3 cut(s) | 327, 344, 511 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BseMII | CTCAG | 1 cut(s) | 488 |
| BseNI | ACTGG | 1 cut(s) | 363 |
| BseRI | GAGGAG | 1 cut(s) | 205 |
| BseXI | GCAGC | 3 cut(s) | 155, 158, 236 |
| Bsh1236I | CGCG | 1 cut(s) | 151 |
| BshNI | GGYRCC | 1 cut(s) | 240 |
| BsiHKAI | GWGCWC | 2 cut(s) | 29, 525 |
| BsiSI | CCGG | 1 cut(s) | 221 |
| BslFI | GGGAC | 1 cut(s) | 194 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BsmAI | GTCTC | 1 cut(s) | 485 |
| BsmFI | GGGAC | 1 cut(s) | 194 |
| Bso31I | GGTCTC | 1 cut(s) | 485 |
| Bsp1286I | GDGCHC | 2 cut(s) | 29, 525 |
| BspACI | CCGC | 2 cut(s) | 96, 151 |
| BspCNI | CTCAG | 1 cut(s) | 487 |
| BspFNI | CGCG | 1 cut(s) | 151 |
| BspLI | GGNNCC | 2 cut(s) | 182, 242 |
| BspT107I | GGYRCC | 1 cut(s) | 240 |
| BspTNI | GGTCTC | 1 cut(s) | 485 |
| BsrI | ACTGG | 1 cut(s) | 363 |
| BssNI | GRCGYC | 1 cut(s) | 241 |
| Bst2UI | CCWGG | 3 cut(s) | 327, 344, 511 |
| Bst4CI | ACNGT | 1 cut(s) | 287 |
| BstACI | GRCGYC | 1 cut(s) | 241 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 230 |
| BstBAI | YACGTR | 2 cut(s) | 387, 437 |
| BstDEI | CTNAG | 1 cut(s) | 474 |
| BstFNI | CGCG | 1 cut(s) | 151 |
| BstH2I | RGCGCY | 3 cut(s) | 65, 244, 275 |
| BstHHI | GCGC | 4 cut(s) | 64, 151, 243, 274 |
| BstMAI | GTCTC | 1 cut(s) | 485 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 127, 157, 230, 278, 520 |
| BstNI | CCWGG | 3 cut(s) | 327, 344, 511 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstSCI | CCNGG | 3 cut(s) | 325, 342, 509 |
| BstUI | CGCG | 1 cut(s) | 151 |
| BstV1I | GCAGC | 3 cut(s) | 155, 158, 236 |
| BtgZI | GCGATG | 1 cut(s) | 106 |
| CfoI | GCGC | 4 cut(s) | 64, 151, 243, 274 |
| Cfr13I | GGNCC | 2 cut(s) | 103, 181 |
| Csp6I | GTAC | 1 cut(s) | 366 |
| CviAII | CATG | 4 cut(s) | 126, 136, 157, 278 |
| CviJI | RGCY | 7 cut(s) | 27, 130, 227, 264, 314, 347, 514 |
| CviKI_1 | RGCY | 7 cut(s) | 27, 130, 227, 264, 314, 347, 514 |
| CviQI | GTAC | 1 cut(s) | 366 |
| DdeI | CTNAG | 1 cut(s) | 474 |
| DinI | GGCGCC | 1 cut(s) | 242 |
| Ecl136II | GAGCTC | 1 cut(s) | 27 |
| Eco24I | GRGCYC | 1 cut(s) | 29 |
| Eco31I | GGTCTC | 1 cut(s) | 485 |
| Eco47I | GGWCC | 2 cut(s) | 103, 181 |
| Eco53kI | GAGCTC | 1 cut(s) | 27 |
| EcoICRI | GAGCTC | 1 cut(s) | 27 |
| EcoRII | CCWGG | 3 cut(s) | 325, 342, 509 |
| EcoT22I | ATGCAT | 2 cut(s) | 22, 162 |
| EcoT38I | GRGCYC | 1 cut(s) | 29 |
| EgeI | GGCGCC | 1 cut(s) | 242 |
| EheI | GGCGCC | 1 cut(s) | 242 |
| FaeI | CATG | 4 cut(s) | 129, 139, 160, 281 |
| FaiI | YATR | 7 cut(s) | 127, 137, 158, 186, 188, 279, 338 |
| FaqI | GGGAC | 1 cut(s) | 194 |
| FatI | CATG | 4 cut(s) | 125, 135, 156, 277 |
| FauI | CCCGC | 2 cut(s) | 89, 144 |
| FauNDI | CATATG | 1 cut(s) | 186 |
| FblI | GTMKAC | 1 cut(s) | 331 |
| Fnu4HI | GCNGC | 3 cut(s) | 144, 147, 225 |
| FriOI | GRGCYC | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 3 cut(s) | 144, 147, 225 |
| FspBI | CTAG | 5 cut(s) | 228, 234, 303, 369, 527 |
| GlaI | GCGC | 4 cut(s) | 63, 150, 242, 273 |
| GluI | GCNGC | 3 cut(s) | 144, 147, 225 |
| GsuI | CTGGAG | 1 cut(s) | 326 |
| HaeII | RGCGCY | 3 cut(s) | 65, 244, 275 |
| HapII | CCGG | 1 cut(s) | 221 |
| HhaI | GCGC | 4 cut(s) | 64, 151, 243, 274 |
| Hin1I | GRCGYC | 1 cut(s) | 241 |
| Hin1II | CATG | 4 cut(s) | 129, 139, 160, 281 |
| Hin6I | GCGC | 4 cut(s) | 62, 149, 241, 272 |
| HinP1I | GCGC | 4 cut(s) | 62, 149, 241, 272 |
| HinfI | GANTC | 1 cut(s) | 249 |
| HpaII | CCGG | 1 cut(s) | 221 |
| HphI | GGTGA | 1 cut(s) | 95 |
| Hpy166II | GTNNAC | 3 cut(s) | 69, 332, 443 |
| Hpy188I | TCNGA | 2 cut(s) | 14, 34 |
| Hpy188III | TCNNGA | 2 cut(s) | 47, 290 |
| Hpy8I | GTNNAC | 3 cut(s) | 69, 332, 443 |
| Hpy99I | CGWCG | 1 cut(s) | 249 |
| HpyAV | CCTTC | 2 cut(s) | 132, 231 |
| HpyCH4III | ACNGT | 1 cut(s) | 287 |
| HpyCH4IV | ACGT | 3 cut(s) | 386, 394, 436 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 20, 160 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 127, 157, 230, 278, 520 |
| HpyF3I | CTNAG | 1 cut(s) | 474 |
| HpySE526I | ACGT | 3 cut(s) | 386, 394, 436 |
| Hsp92I | GRCGYC | 1 cut(s) | 241 |
| Hsp92II | CATG | 4 cut(s) | 129, 139, 160, 281 |
| HspAI | GCGC | 4 cut(s) | 62, 149, 241, 272 |
| KasI | GGCGCC | 1 cut(s) | 240 |
| LmnI | GCTCC | 2 cut(s) | 345, 528 |
| Lsp1109I | GCAGC | 3 cut(s) | 155, 158, 236 |
| LweI | GCATC | 2 cut(s) | 83, 169 |
| MaeI | CTAG | 5 cut(s) | 228, 234, 303, 369, 527 |
| MaeII | ACGT | 3 cut(s) | 386, 394, 436 |
| MaeIII | GTNAC | 1 cut(s) | 413 |
| MboII | GAAGA | 2 cut(s) | 364, 367 |
| MfeI | CAATTG | 1 cut(s) | 5 |
| MhlI | GDGCHC | 2 cut(s) | 29, 525 |
| MluCI | AATT | 4 cut(s) | 5, 198, 254, 428 |
| Mly113I | GGCGCC | 1 cut(s) | 241 |
| MmeI | TCCRAC | 1 cut(s) | 81 |
| MnlI | CCTC | 6 cut(s) | 103, 177, 201, 223, 226, 286 |
| Mph1103I | ATGCAT | 2 cut(s) | 22, 162 |
| MseI | TTAA | 2 cut(s) | 197, 380 |
| MspI | CCGG | 1 cut(s) | 221 |
| MspR9I | CCNGG | 3 cut(s) | 327, 344, 511 |
| MunI | CAATTG | 1 cut(s) | 5 |
| MvaI | CCWGG | 3 cut(s) | 327, 344, 511 |
| MvnI | CGCG | 1 cut(s) | 151 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 127, 157, 230, 278, 520 |
| NarI | GGCGCC | 1 cut(s) | 241 |
| NdeI | CATATG | 1 cut(s) | 186 |
| NlaIII | CATG | 4 cut(s) | 129, 139, 160, 281 |
| NlaIV | GGNNCC | 2 cut(s) | 182, 242 |
| NmuCI | GTSAC | 1 cut(s) | 413 |
| NsiI | ATGCAT | 2 cut(s) | 22, 162 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PciI | ACATGT | 1 cut(s) | 135 |
| PfeI | GAWTC | 1 cut(s) | 249 |
| PkrI | GCNGC | 3 cut(s) | 145, 148, 226 |
| PluTI | GGCGCC | 1 cut(s) | 244 |
| Ppu21I | YACGTR | 2 cut(s) | 387, 437 |
| PscI | ACATGT | 1 cut(s) | 135 |
| PshBI | ATTAAT | 1 cut(s) | 197 |
| Psp124BI | GAGCTC | 1 cut(s) | 29 |
| Psp1406I | AACGTT | 1 cut(s) | 394 |
| Psp6I | CCWGG | 3 cut(s) | 325, 342, 509 |
| PspGI | CCWGG | 3 cut(s) | 325, 342, 509 |
| PspN4I | GGNNCC | 2 cut(s) | 182, 242 |
| PspPI | GGNCC | 2 cut(s) | 103, 181 |
| RsaI | GTAC | 1 cut(s) | 367 |
| RsaNI | GTAC | 1 cut(s) | 366 |
| SacI | GAGCTC | 1 cut(s) | 29 |
| SaqAI | TTAA | 2 cut(s) | 197, 380 |
| SatI | GCNGC | 3 cut(s) | 144, 147, 225 |
| Sau96I | GGNCC | 2 cut(s) | 103, 181 |
| ScaI | AGTACT | 1 cut(s) | 367 |
| ScrFI | CCNGG | 3 cut(s) | 327, 344, 511 |
| SduI | GDGCHC | 2 cut(s) | 29, 525 |
| SfaNI | GCATC | 2 cut(s) | 83, 169 |
| SfoI | GGCGCC | 1 cut(s) | 242 |
| SinI | GGWCC | 2 cut(s) | 103, 181 |
| Sse9I | AATT | 4 cut(s) | 5, 198, 254, 428 |
| SsiI | CCGC | 2 cut(s) | 96, 151 |
| SspDI | GGCGCC | 1 cut(s) | 240 |
| SspMI | CTAG | 5 cut(s) | 228, 234, 303, 369, 527 |
| SstI | GAGCTC | 1 cut(s) | 29 |
| StyD4I | CCNGG | 3 cut(s) | 325, 342, 509 |
| TaaI | ACNGT | 1 cut(s) | 287 |
| TaiI | ACGT | 3 cut(s) | 389, 397, 439 |
| TasI | AATT | 4 cut(s) | 5, 198, 254, 428 |
| TatI | WGTACW | 1 cut(s) | 365 |
| TfiI | GAWTC | 1 cut(s) | 249 |
| Tru1I | TTAA | 2 cut(s) | 197, 380 |
| Tru9I | TTAA | 2 cut(s) | 197, 380 |
| TseFI | GTSAC | 1 cut(s) | 413 |
| TseI | GCWGC | 3 cut(s) | 143, 146, 224 |
| Tsp45I | GTSAC | 1 cut(s) | 413 |
| TspDTI | ATGAA | 2 cut(s) | 114, 266 |
| VpaK11BI | GGWCC | 2 cut(s) | 103, 181 |
| VspI | ATTAAT | 1 cut(s) | 197 |
| XapI | RAATTY | 1 cut(s) | 254 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XmiI | GTMKAC | 1 cut(s) | 331 |
| XspI | CTAG | 5 cut(s) | 228, 234, 303, 369, 527 |
| ZrmI | AGTACT | 1 cut(s) | 367 |
| Zsp2I | ATGCAT | 2 cut(s) | 22, 162 |