ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 632 |
| Acc36I | ACCTGC | 1 cut(s) | 229 |
| AciI | CCGC | 1 cut(s) | 285 |
| AclI | AACGTT | 1 cut(s) | 892 |
| AclWI | GGATC | 3 cut(s) | 72, 390, 673 |
| AcsI | RAATTY | 1 cut(s) | 6 |
| AfaI | GTAC | 3 cut(s) | 46, 247, 260 |
| AgeI | ACCGGT | 1 cut(s) | 932 |
| AgsI | TTSAA | 8 cut(s) | 61, 107, 275, 421, 557, 821, 827, 913 |
| AjnI | CCWGG | 2 cut(s) | 398, 644 |
| AleI | CACNNNNGTG | 1 cut(s) | 198 |
| AluBI | AGCT | 3 cut(s) | 565, 641, 790 |
| AluI | AGCT | 3 cut(s) | 565, 641, 790 |
| Alw21I | GWGCWC | 3 cut(s) | 154, 195, 792 |
| Alw44I | GTGCAC | 1 cut(s) | 150 |
| AlwI | GGATC | 3 cut(s) | 72, 390, 673 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 859 |
| AoxI | GGCC | 1 cut(s) | 83 |
| ApaLI | GTGCAC | 1 cut(s) | 150 |
| ApeKI | GCWGC | 3 cut(s) | 562, 850, 859 |
| ApoI | RAATTY | 1 cut(s) | 6 |
| AsiGI | ACCGGT | 1 cut(s) | 932 |
| AspA2I | CCTAGG | 2 cut(s) | 493, 517 |
| AspLEI | GCGC | 1 cut(s) | 394 |
| AspS9I | GGNCC | 2 cut(s) | 514, 530 |
| AsuHPI | GGTGA | 2 cut(s) | 660, 932 |
| AvaII | GGWCC | 2 cut(s) | 514, 530 |
| AvrII | CCTAGG | 2 cut(s) | 493, 517 |
| BaeGI | GKGCMC | 1 cut(s) | 154 |
| BanII | GRGCYC | 1 cut(s) | 792 |
| BbsI | GAAGAC | 1 cut(s) | 88 |
| Bbv12I | GWGCWC | 3 cut(s) | 154, 195, 792 |
| BbvCI | CCTCAGC | 1 cut(s) | 566 |
| BbvI | GCAGC | 3 cut(s) | 574, 837, 846 |
| BccI | CCATC | 4 cut(s) | 118, 275, 297, 835 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 29, 63, 350, 384 |
| BciT130I | CCWGG | 2 cut(s) | 400, 646 |
| BfaI | CTAG | 7 cut(s) | 51, 155, 333, 386, 494, 518, 705 |
| BfmI | CTRYAG | 2 cut(s) | 322, 851 |
| BfuAI | ACCTGC | 1 cut(s) | 229 |
| BisI | GCNGC | 3 cut(s) | 563, 851, 860 |
| BlnI | CCTAGG | 2 cut(s) | 493, 517 |
| BlsI | GCNGC | 3 cut(s) | 564, 852, 861 |
| BmcAI | AGTACT | 1 cut(s) | 46 |
| Bme1390I | CCNGG | 2 cut(s) | 400, 646 |
| Bme18I | GGWCC | 2 cut(s) | 514, 530 |
| BmgT120I | GGNCC | 2 cut(s) | 514, 530 |
| BmiI | GGNNCC | 1 cut(s) | 532 |
| BmrFI | CCNGG | 2 cut(s) | 400, 646 |
| BmrI | ACTGGG | 1 cut(s) | 250 |
| BmsI | GCATC | 2 cut(s) | 379, 846 |
| BmuI | ACTGGG | 1 cut(s) | 250 |
| BpiI | GAAGAC | 1 cut(s) | 88 |
| BpmI | CTGGAG | 1 cut(s) | 803 |
| Bpu10I | CCTNAGC | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 3 cut(s) | 398, 493, 517 |
| BsaWI | WCCGGW | 1 cut(s) | 932 |
| Bse118I | RCCGGY | 1 cut(s) | 932 |
| Bse1I | ACTGG | 2 cut(s) | 256, 786 |
| BseBI | CCWGG | 2 cut(s) | 400, 646 |
| BseDI | CCNNGG | 3 cut(s) | 398, 493, 517 |
| BseGI | GGATG | 4 cut(s) | 133, 216, 232, 654 |
| BseMII | CTCAG | 5 cut(s) | 25, 173, 210, 557, 801 |
| BseNI | ACTGG | 2 cut(s) | 256, 786 |
| BseRI | GAGGAG | 1 cut(s) | 800 |
| BseSI | GKGCMC | 1 cut(s) | 154 |
| BseXI | GCAGC | 3 cut(s) | 574, 837, 846 |
| BsgI | GTGCAG | 1 cut(s) | 257 |
| BshFI | GGCC | 1 cut(s) | 85 |
| BshTI | ACCGGT | 1 cut(s) | 932 |
| BsiHKAI | GWGCWC | 3 cut(s) | 154, 195, 792 |
| BsiSI | CCGG | 1 cut(s) | 933 |
| BsnI | GGCC | 1 cut(s) | 85 |
| Bsp1286I | GDGCHC | 3 cut(s) | 154, 195, 792 |
| Bsp143I | GATC | 4 cut(s) | 64, 353, 382, 665 |
| BspACI | CCGC | 1 cut(s) | 285 |
| BspANI | GGCC | 1 cut(s) | 85 |
| BspCNI | CTCAG | 5 cut(s) | 24, 174, 209, 558, 802 |
| BspLI | GGNNCC | 1 cut(s) | 532 |
| BspMAI | CTGCAG | 1 cut(s) | 855 |
| BspMI | ACCTGC | 1 cut(s) | 229 |
| BspPI | GGATC | 3 cut(s) | 72, 390, 673 |
| BsrFI | RCCGGY | 1 cut(s) | 932 |
| BsrI | ACTGG | 2 cut(s) | 256, 786 |
| BssAI | RCCGGY | 1 cut(s) | 932 |
| BssECI | CCNNGG | 3 cut(s) | 398, 493, 517 |
| BssMI | GATC | 4 cut(s) | 64, 353, 382, 665 |
| BssT1I | CCWWGG | 2 cut(s) | 493, 517 |
| Bst2UI | CCWGG | 2 cut(s) | 400, 646 |
| Bst4CI | ACNGT | 5 cut(s) | 44, 299, 326, 503, 837 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 859 |
| BstDEI | CTNAG | 7 cut(s) | 11, 182, 196, 566, 793, 810, 897 |
| BstEII | GGTNACC | 1 cut(s) | 293 |
| BstF5I | GGATG | 4 cut(s) | 133, 216, 232, 654 |
| BstHHI | GCGC | 1 cut(s) | 394 |
| BstKTI | GATC | 4 cut(s) | 67, 356, 385, 668 |
| BstMBI | GATC | 4 cut(s) | 64, 353, 382, 665 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 568, 582, 856, 859 |
| BstNI | CCWGG | 2 cut(s) | 400, 646 |
| BstNSI | RCATGY | 1 cut(s) | 704 |
| BstPI | GGTNACC | 1 cut(s) | 293 |
| BstSCI | CCNGG | 2 cut(s) | 398, 644 |
| BstSFI | CTRYAG | 2 cut(s) | 322, 851 |
| BstSLI | GKGCMC | 1 cut(s) | 154 |
| BstV1I | GCAGC | 3 cut(s) | 574, 837, 846 |
| BstV2I | GAAGAC | 1 cut(s) | 88 |
| BstX2I | RGATCY | 2 cut(s) | 64, 382 |
| BstYI | RGATCY | 2 cut(s) | 64, 382 |
| BsuRI | GGCC | 1 cut(s) | 85 |
| BtgZI | GCGATG | 1 cut(s) | 929 |
| BtsCI | GGATG | 4 cut(s) | 133, 216, 232, 654 |
| BtsI | GCAGTG | 2 cut(s) | 166, 580 |
| BtsIMutI | CAGTG | 2 cut(s) | 166, 580 |
| BveI | ACCTGC | 1 cut(s) | 229 |
| CaiI | CAGNNNCTG | 1 cut(s) | 859 |
| CfoI | GCGC | 1 cut(s) | 394 |
| Cfr10I | RCCGGY | 1 cut(s) | 932 |
| Cfr13I | GGNCC | 2 cut(s) | 514, 530 |
| Csp6I | GTAC | 3 cut(s) | 45, 246, 259 |
| CspAI | ACCGGT | 1 cut(s) | 932 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 524, 559 |
| CviAII | CATG | 3 cut(s) | 527, 614, 701 |
| CviQI | GTAC | 3 cut(s) | 45, 246, 259 |
| DdeI | CTNAG | 7 cut(s) | 11, 182, 196, 566, 793, 810, 897 |
| DpnI | GATC | 4 cut(s) | 66, 355, 384, 667 |
| DpnII | GATC | 4 cut(s) | 64, 353, 382, 665 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 632 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 632 |
| Ecl136II | GAGCTC | 1 cut(s) | 790 |
| Eco130I | CCWWGG | 2 cut(s) | 493, 517 |
| Eco147I | AGGCCT | 1 cut(s) | 85 |
| Eco24I | GRGCYC | 1 cut(s) | 792 |
| Eco47I | GGWCC | 2 cut(s) | 514, 530 |
| Eco53kI | GAGCTC | 1 cut(s) | 790 |
| Eco91I | GGTNACC | 1 cut(s) | 293 |
| EcoICRI | GAGCTC | 1 cut(s) | 790 |
| EcoO65I | GGTNACC | 1 cut(s) | 293 |
| EcoRII | CCWGG | 2 cut(s) | 398, 644 |
| EcoT14I | CCWWGG | 2 cut(s) | 493, 517 |
| EcoT38I | GRGCYC | 1 cut(s) | 792 |
| ErhI | CCWWGG | 2 cut(s) | 493, 517 |
| FaeI | CATG | 3 cut(s) | 530, 617, 704 |
| FaiI | YATR | 6 cut(s) | 264, 330, 528, 601, 615, 702 |
| FatI | CATG | 3 cut(s) | 526, 613, 700 |
| FauI | CCCGC | 1 cut(s) | 278 |
| Fnu4HI | GCNGC | 3 cut(s) | 563, 851, 860 |
| FokI | GGATG | 4 cut(s) | 140, 223, 239, 661 |
| FriOI | GRGCYC | 1 cut(s) | 792 |
| Fsp4HI | GCNGC | 3 cut(s) | 563, 851, 860 |
| FspBI | CTAG | 7 cut(s) | 51, 155, 333, 386, 494, 518, 705 |
| GlaI | GCGC | 1 cut(s) | 393 |
| GluI | GCNGC | 3 cut(s) | 563, 851, 860 |
| GsuI | CTGGAG | 1 cut(s) | 803 |
| HaeIII | GGCC | 1 cut(s) | 85 |
| HapII | CCGG | 1 cut(s) | 933 |
| HhaI | GCGC | 1 cut(s) | 394 |
| Hin1II | CATG | 3 cut(s) | 530, 617, 704 |
| Hin6I | GCGC | 1 cut(s) | 392 |
| HinP1I | GCGC | 1 cut(s) | 392 |
| HinfI | GANTC | 2 cut(s) | 307, 875 |
| HpaII | CCGG | 1 cut(s) | 933 |
| HphI | GGTGA | 2 cut(s) | 660, 932 |
| Hpy166II | GTNNAC | 1 cut(s) | 152 |
| Hpy188I | TCNGA | 6 cut(s) | 69, 123, 183, 442, 665, 811 |
| Hpy188III | TCNNGA | 2 cut(s) | 371, 386 |
| Hpy8I | GTNNAC | 1 cut(s) | 152 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 2 cut(s) | 55, 226 |
| HpyCH4III | ACNGT | 5 cut(s) | 44, 299, 326, 503, 837 |
| HpyCH4IV | ACGT | 2 cut(s) | 542, 892 |
| HpyCH4V | TGCA | 8 cut(s) | 24, 36, 74, 152, 238, 562, 613, 853 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 568, 582, 856, 859 |
| HpyF3I | CTNAG | 7 cut(s) | 11, 182, 196, 566, 793, 810, 897 |
| HpySE526I | ACGT | 2 cut(s) | 542, 892 |
| Hsp92II | CATG | 3 cut(s) | 530, 617, 704 |
| HspAI | GCGC | 1 cut(s) | 392 |
| Kzo9I | GATC | 4 cut(s) | 64, 353, 382, 665 |
| LmnI | GCTCC | 2 cut(s) | 590, 787 |
| Lsp1109I | GCAGC | 3 cut(s) | 574, 837, 846 |
| LweI | GCATC | 2 cut(s) | 379, 846 |
| MaeI | CTAG | 7 cut(s) | 51, 155, 333, 386, 494, 518, 705 |
| MaeII | ACGT | 2 cut(s) | 542, 892 |
| MaeIII | GTNAC | 6 cut(s) | 293, 497, 623, 799, 901, 920 |
| MalI | GATC | 4 cut(s) | 66, 355, 384, 667 |
| MboI | GATC | 4 cut(s) | 64, 353, 382, 665 |
| MboII | GAAGA | 1 cut(s) | 88 |
| MflI | RGATCY | 2 cut(s) | 64, 382 |
| MhlI | GDGCHC | 3 cut(s) | 154, 195, 792 |
| MluCI | AATT | 5 cut(s) | 6, 19, 276, 374, 415 |
| MlyI | GAGTC | 1 cut(s) | 316 |
| MmeI | TCCRAC | 2 cut(s) | 492, 643 |
| MseI | TTAA | 2 cut(s) | 432, 764 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| MspA1I | CMGCKG | 1 cut(s) | 565 |
| MspI | CCGG | 1 cut(s) | 933 |
| MspR9I | CCNGG | 2 cut(s) | 400, 646 |
| MvaI | CCWGG | 2 cut(s) | 400, 646 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 568, 582, 856, 859 |
| NdeII | GATC | 4 cut(s) | 64, 353, 382, 665 |
| NlaIII | CATG | 3 cut(s) | 530, 617, 704 |
| NlaIV | GGNNCC | 1 cut(s) | 532 |
| NmuCI | GTSAC | 3 cut(s) | 623, 799, 920 |
| NspI | RCATGY | 1 cut(s) | 704 |
| OliI | CACNNNNGTG | 1 cut(s) | 198 |
| PceI | AGGCCT | 1 cut(s) | 85 |
| PfeI | GAWTC | 1 cut(s) | 875 |
| PinAI | ACCGGT | 1 cut(s) | 932 |
| PkrI | GCNGC | 3 cut(s) | 564, 852, 861 |
| PleI | GAGTC | 1 cut(s) | 315 |
| PpsI | GAGTC | 1 cut(s) | 315 |
| Psp124BI | GAGCTC | 1 cut(s) | 792 |
| Psp1406I | AACGTT | 1 cut(s) | 892 |
| Psp6I | CCWGG | 2 cut(s) | 398, 644 |
| PspEI | GGTNACC | 1 cut(s) | 293 |
| PspGI | CCWGG | 2 cut(s) | 398, 644 |
| PspN4I | GGNNCC | 1 cut(s) | 532 |
| PspPI | GGNCC | 2 cut(s) | 514, 530 |
| PstI | CTGCAG | 1 cut(s) | 855 |
| PstNI | CAGNNNCTG | 1 cut(s) | 859 |
| PsuI | RGATCY | 2 cut(s) | 64, 382 |
| PvuII | CAGCTG | 1 cut(s) | 565 |
| RsaI | GTAC | 3 cut(s) | 46, 247, 260 |
| RsaNI | GTAC | 3 cut(s) | 45, 246, 259 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SacI | GAGCTC | 1 cut(s) | 792 |
| SaqAI | TTAA | 2 cut(s) | 432, 764 |
| SatI | GCNGC | 3 cut(s) | 563, 851, 860 |
| Sau3AI | GATC | 4 cut(s) | 64, 353, 382, 665 |
| Sau96I | GGNCC | 2 cut(s) | 514, 530 |
| ScaI | AGTACT | 1 cut(s) | 46 |
| SchI | GAGTC | 1 cut(s) | 316 |
| ScrFI | CCNGG | 2 cut(s) | 400, 646 |
| SduI | GDGCHC | 3 cut(s) | 154, 195, 792 |
| SfaNI | GCATC | 2 cut(s) | 379, 846 |
| SfcI | CTRYAG | 2 cut(s) | 322, 851 |
| SinI | GGWCC | 2 cut(s) | 514, 530 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| Sse9I | AATT | 5 cut(s) | 6, 19, 276, 374, 415 |
| SseBI | AGGCCT | 1 cut(s) | 85 |
| SsiI | CCGC | 1 cut(s) | 285 |
| SspMI | CTAG | 7 cut(s) | 51, 155, 333, 386, 494, 518, 705 |
| SstI | GAGCTC | 1 cut(s) | 792 |
| StuI | AGGCCT | 1 cut(s) | 85 |
| StyD4I | CCNGG | 2 cut(s) | 398, 644 |
| StyI | CCWWGG | 2 cut(s) | 493, 517 |
| TaaI | ACNGT | 5 cut(s) | 44, 299, 326, 503, 837 |
| TaiI | ACGT | 2 cut(s) | 545, 895 |
| TaqI | TCGA | 2 cut(s) | 341, 741 |
| TasI | AATT | 5 cut(s) | 6, 19, 276, 374, 415 |
| TatI | WGTACW | 1 cut(s) | 44 |
| TfiI | GAWTC | 1 cut(s) | 875 |
| Tru1I | TTAA | 2 cut(s) | 432, 764 |
| Tru9I | TTAA | 2 cut(s) | 432, 764 |
| TscAI | CASTG | 2 cut(s) | 173, 587 |
| TseFI | GTSAC | 3 cut(s) | 623, 799, 920 |
| TseI | GCWGC | 3 cut(s) | 562, 850, 859 |
| Tsp45I | GTSAC | 3 cut(s) | 623, 799, 920 |
| TspDTI | ATGAA | 4 cut(s) | 438, 515, 630, 932 |
| TspRI | CASTG | 2 cut(s) | 173, 587 |
| VneI | GTGCAC | 1 cut(s) | 150 |
| VpaK11BI | GGWCC | 2 cut(s) | 514, 530 |
| XapI | RAATTY | 1 cut(s) | 6 |
| XbaI | TCTAGA | 1 cut(s) | 385 |
| XceI | RCATGY | 1 cut(s) | 704 |
| XmaJI | CCTAGG | 2 cut(s) | 493, 517 |
| XspI | CTAG | 7 cut(s) | 51, 155, 333, 386, 494, 518, 705 |
| ZrmI | AGTACT | 1 cut(s) | 46 |