ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 414 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 311 |
| AccII | CGCG | 2 cut(s) | 587, 589 |
| AciI | CCGC | 4 cut(s) | 164, 585, 589, 612 |
| AfaI | GTAC | 3 cut(s) | 225, 375, 593 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 33, 311 |
| AgsI | TTSAA | 1 cut(s) | 145 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 20, 52 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 306, 338 |
| AluBI | AGCT | 3 cut(s) | 176, 281, 450 |
| AluI | AGCT | 3 cut(s) | 176, 281, 450 |
| Alw21I | GWGCWC | 1 cut(s) | 530 |
| Alw26I | GTCTC | 2 cut(s) | 95, 309 |
| Alw44I | GTGCAC | 1 cut(s) | 526 |
| Ama87I | CYCGRG | 1 cut(s) | 554 |
| AoxI | GGCC | 1 cut(s) | 557 |
| ApaLI | GTGCAC | 1 cut(s) | 526 |
| ApeKI | GCWGC | 2 cut(s) | 161, 405 |
| AspLEI | GCGC | 1 cut(s) | 589 |
| AspS9I | GGNCC | 3 cut(s) | 454, 557, 582 |
| AsuHPI | GGTGA | 2 cut(s) | 181, 367 |
| AvaI | CYCGRG | 1 cut(s) | 554 |
| AvaII | GGWCC | 2 cut(s) | 454, 582 |
| BaeGI | GKGCMC | 1 cut(s) | 530 |
| Bbv12I | GWGCWC | 1 cut(s) | 530 |
| BbvI | GCAGC | 2 cut(s) | 173, 417 |
| BccI | CCATC | 2 cut(s) | 75, 372 |
| BceAI | ACGGC | 1 cut(s) | 446 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 234, 268 |
| BcoDI | GTCTC | 2 cut(s) | 95, 309 |
| BfaI | CTAG | 3 cut(s) | 285, 399, 503 |
| BfuAI | ACCTGC | 1 cut(s) | 414 |
| BisI | GCNGC | 2 cut(s) | 162, 406 |
| BlsI | GCNGC | 2 cut(s) | 163, 407 |
| Bme18I | GGWCC | 2 cut(s) | 454, 582 |
| BmeT110I | CYCGRG | 1 cut(s) | 554 |
| BmgT120I | GGNCC | 3 cut(s) | 454, 557, 582 |
| BmiI | GGNNCC | 2 cut(s) | 303, 455 |
| BmsI | GCATC | 2 cut(s) | 61, 539 |
| BpuEI | CTTGAG | 1 cut(s) | 77 |
| BsaI | GGTCTC | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 3 cut(s) | 122, 310, 553 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 306, 336 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 33, 311 |
| Bse1I | ACTGG | 2 cut(s) | 192, 480 |
| Bse3DI | GCAATG | 1 cut(s) | 575 |
| BseDI | CCNNGG | 3 cut(s) | 122, 310, 553 |
| BseGI | GGATG | 3 cut(s) | 52, 90, 112 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 33, 311 |
| BseMI | GCAATG | 1 cut(s) | 575 |
| BseNI | ACTGG | 2 cut(s) | 192, 480 |
| BseSI | GKGCMC | 1 cut(s) | 530 |
| BseXI | GCAGC | 2 cut(s) | 173, 417 |
| BseYI | CCCAGC | 1 cut(s) | 450 |
| BsgI | GTGCAG | 1 cut(s) | 424 |
| Bsh1236I | CGCG | 2 cut(s) | 587, 589 |
| BshFI | GGCC | 1 cut(s) | 559 |
| BsiHKAI | GWGCWC | 1 cut(s) | 530 |
| BsiHKCI | CYCGRG | 1 cut(s) | 554 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 33, 311 |
| BsmAI | GTCTC | 2 cut(s) | 95, 309 |
| BsnI | GGCC | 1 cut(s) | 559 |
| Bso31I | GGTCTC | 1 cut(s) | 309 |
| BsoBI | CYCGRG | 1 cut(s) | 554 |
| Bsp1286I | GDGCHC | 1 cut(s) | 530 |
| Bsp1407I | TGTACA | 1 cut(s) | 223 |
| Bsp19I | CCATGG | 2 cut(s) | 122, 310 |
| BspACI | CCGC | 4 cut(s) | 164, 585, 589, 612 |
| BspANI | GGCC | 1 cut(s) | 559 |
| BspFNI | CGCG | 2 cut(s) | 587, 589 |
| BspLI | GGNNCC | 2 cut(s) | 303, 455 |
| BspMI | ACCTGC | 1 cut(s) | 414 |
| BspTNI | GGTCTC | 1 cut(s) | 309 |
| BsrDI | GCAATG | 1 cut(s) | 575 |
| BsrGI | TGTACA | 1 cut(s) | 223 |
| BsrI | ACTGG | 2 cut(s) | 192, 480 |
| BssECI | CCNNGG | 3 cut(s) | 122, 310, 553 |
| BssT1I | CCWWGG | 2 cut(s) | 122, 310 |
| Bst4CI | ACNGT | 2 cut(s) | 72, 228 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 514 |
| BstAUI | TGTACA | 1 cut(s) | 223 |
| BstC8I | GCNNGC | 2 cut(s) | 159, 421 |
| BstDEI | CTNAG | 1 cut(s) | 444 |
| BstDSI | CCRYGG | 2 cut(s) | 122, 310 |
| BstF5I | GGATG | 3 cut(s) | 52, 90, 112 |
| BstFNI | CGCG | 2 cut(s) | 587, 589 |
| BstHHI | GCGC | 1 cut(s) | 589 |
| BstMAI | GTCTC | 2 cut(s) | 95, 309 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 514, 565, 595 |
| BstNSI | RCATGY | 1 cut(s) | 161 |
| BstSLI | GKGCMC | 1 cut(s) | 530 |
| BstUI | CGCG | 2 cut(s) | 587, 589 |
| BstV1I | GCAGC | 2 cut(s) | 173, 417 |
| BsuRI | GGCC | 1 cut(s) | 559 |
| BtgI | CCRYGG | 2 cut(s) | 122, 310 |
| BtsCI | GGATG | 3 cut(s) | 52, 90, 112 |
| BtsI | GCAGTG | 1 cut(s) | 473 |
| BtsIMutI | CAGTG | 3 cut(s) | 199, 233, 473 |
| BveI | ACCTGC | 1 cut(s) | 414 |
| Cac8I | GCNNGC | 2 cut(s) | 159, 421 |
| CfoI | GCGC | 1 cut(s) | 589 |
| Cfr13I | GGNCC | 3 cut(s) | 454, 557, 582 |
| Csp6I | GTAC | 3 cut(s) | 224, 374, 592 |
| CviAII | CATG | 8 cut(s) | 123, 158, 212, 261, 311, 320, 371, 409 |
| CviJI | RGCY | 7 cut(s) | 176, 281, 302, 433, 450, 545, 559 |
| CviKI_1 | RGCY | 7 cut(s) | 176, 281, 302, 433, 450, 545, 559 |
| CviQI | GTAC | 3 cut(s) | 224, 374, 592 |
| DdeI | CTNAG | 1 cut(s) | 444 |
| EciI | GGCGGA | 1 cut(s) | 601 |
| Eco130I | CCWWGG | 2 cut(s) | 122, 310 |
| Eco31I | GGTCTC | 1 cut(s) | 309 |
| Eco47I | GGWCC | 2 cut(s) | 454, 582 |
| Eco88I | CYCGRG | 1 cut(s) | 554 |
| EcoT14I | CCWWGG | 2 cut(s) | 122, 310 |
| ErhI | CCWWGG | 2 cut(s) | 122, 310 |
| FaeI | CATG | 8 cut(s) | 126, 161, 215, 264, 314, 323, 374, 412 |
| FatI | CATG | 8 cut(s) | 122, 157, 211, 260, 310, 319, 370, 408 |
| Fnu4HI | GCNGC | 2 cut(s) | 162, 406 |
| FokI | GGATG | 3 cut(s) | 39, 97, 119 |
| Fsp4HI | GCNGC | 2 cut(s) | 162, 406 |
| FspBI | CTAG | 3 cut(s) | 285, 399, 503 |
| GlaI | GCGC | 1 cut(s) | 588 |
| GluI | GCNGC | 2 cut(s) | 162, 406 |
| GsaI | CCCAGC | 1 cut(s) | 454 |
| HaeIII | GGCC | 1 cut(s) | 559 |
| HhaI | GCGC | 1 cut(s) | 589 |
| Hin1II | CATG | 8 cut(s) | 126, 161, 215, 264, 314, 323, 374, 412 |
| Hin6I | GCGC | 1 cut(s) | 587 |
| HinP1I | GCGC | 1 cut(s) | 587 |
| HinfI | GANTC | 1 cut(s) | 110 |
| HphI | GGTGA | 2 cut(s) | 181, 367 |
| Hpy166II | GTNNAC | 4 cut(s) | 189, 204, 224, 528 |
| Hpy188I | TCNGA | 2 cut(s) | 327, 486 |
| Hpy188III | TCNNGA | 1 cut(s) | 390 |
| Hpy8I | GTNNAC | 4 cut(s) | 189, 204, 224, 528 |
| HpyAV | CCTTC | 1 cut(s) | 210 |
| HpyCH4III | ACNGT | 2 cut(s) | 72, 228 |
| HpyCH4V | TGCA | 8 cut(s) | 157, 161, 405, 419, 466, 517, 528, 568 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 514, 565, 595 |
| HpyF3I | CTNAG | 1 cut(s) | 444 |
| Hsp92II | CATG | 8 cut(s) | 126, 161, 215, 264, 314, 323, 374, 412 |
| HspAI | GCGC | 1 cut(s) | 587 |
| LmnI | GCTCC | 1 cut(s) | 307 |
| LpnPI | CCDG | 7 cut(s) | 205, 291, 405, 409, 436, 493, 520 |
| Lsp1109I | GCAGC | 2 cut(s) | 173, 417 |
| LweI | GCATC | 2 cut(s) | 61, 539 |
| MaeI | CTAG | 3 cut(s) | 285, 399, 503 |
| MaeIII | GTNAC | 4 cut(s) | 114, 289, 426, 472 |
| MhlI | GDGCHC | 1 cut(s) | 530 |
| MluCI | AATT | 1 cut(s) | 459 |
| MmeI | TCCRAC | 2 cut(s) | 51, 216 |
| MnlI | CCTC | 2 cut(s) | 563, 573 |
| MslI | CAYNNNNRTG | 1 cut(s) | 121 |
| MspA1I | CMGCKG | 1 cut(s) | 164 |
| MvnI | CGCG | 2 cut(s) | 587, 589 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 514, 565, 595 |
| NcoI | CCATGG | 2 cut(s) | 122, 310 |
| NlaIII | CATG | 8 cut(s) | 126, 161, 215, 264, 314, 323, 374, 412 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 455 |
| NmuCI | GTSAC | 1 cut(s) | 114 |
| NspI | RCATGY | 1 cut(s) | 161 |
| PaeI | GCATGC | 1 cut(s) | 161 |
| PfeI | GAWTC | 1 cut(s) | 110 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 311 |
| PkrI | GCNGC | 2 cut(s) | 163, 407 |
| PspFI | CCCAGC | 1 cut(s) | 450 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 455 |
| PspPI | GGNCC | 3 cut(s) | 454, 557, 582 |
| RsaI | GTAC | 3 cut(s) | 225, 375, 593 |
| RsaNI | GTAC | 3 cut(s) | 224, 374, 592 |
| RseI | CAYNNNNRTG | 1 cut(s) | 121 |
| SatI | GCNGC | 2 cut(s) | 162, 406 |
| Sau96I | GGNCC | 3 cut(s) | 454, 557, 582 |
| SduI | GDGCHC | 1 cut(s) | 530 |
| SfaNI | GCATC | 2 cut(s) | 61, 539 |
| SinI | GGWCC | 2 cut(s) | 454, 582 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 121 |
| SmlI | CTYRAG | 1 cut(s) | 92 |
| SmoI | CTYRAG | 1 cut(s) | 92 |
| SphI | GCATGC | 1 cut(s) | 161 |
| Sse9I | AATT | 1 cut(s) | 459 |
| SsiI | CCGC | 4 cut(s) | 164, 585, 589, 612 |
| SspI | AATATT | 1 cut(s) | 153 |
| SspMI | CTAG | 3 cut(s) | 285, 399, 503 |
| StyI | CCWWGG | 2 cut(s) | 122, 310 |
| TaaI | ACNGT | 2 cut(s) | 72, 228 |
| TaqI | TCGA | 1 cut(s) | 389 |
| TasI | AATT | 1 cut(s) | 459 |
| TatI | WGTACW | 1 cut(s) | 223 |
| TfiI | GAWTC | 1 cut(s) | 110 |
| TscAI | CASTG | 3 cut(s) | 199, 233, 473 |
| TseFI | GTSAC | 1 cut(s) | 114 |
| TseI | GCWGC | 2 cut(s) | 161, 405 |
| Tsp45I | GTSAC | 1 cut(s) | 114 |
| TspDTI | ATGAA | 2 cut(s) | 123, 162 |
| TspRI | CASTG | 3 cut(s) | 199, 233, 473 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 311 |
| VneI | GTGCAC | 1 cut(s) | 526 |
| VpaK11BI | GGWCC | 2 cut(s) | 454, 582 |
| XceI | RCATGY | 1 cut(s) | 161 |
| XspI | CTAG | 3 cut(s) | 285, 399, 503 |