Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 265, 658 |
| AclWI | GGATC | 1 cut(s) | 414 |
| AcsI | RAATTY | 2 cut(s) | 107, 871 |
| AcuI | CTGAAG | 1 cut(s) | 653 |
| AfaI | GTAC | 3 cut(s) | 504, 541, 638 |
| AgsI | TTSAA | 2 cut(s) | 96, 581 |
| AjnI | CCWGG | 1 cut(s) | 812 |
| AleI | CACNNNNGTG | 1 cut(s) | 16 |
| AluBI | AGCT | 2 cut(s) | 33, 477 |
| AluI | AGCT | 2 cut(s) | 33, 477 |
| AlwI | GGATC | 1 cut(s) | 414 |
| ApeKI | GCWGC | 2 cut(s) | 392, 516 |
| ApoI | RAATTY | 2 cut(s) | 107, 871 |
| AspS9I | GGNCC | 4 cut(s) | 237, 295, 318, 327 |
| AsuHPI | GGTGA | 3 cut(s) | 449, 562, 902 |
| AsuII | TTCGAA | 1 cut(s) | 349 |
| AvaII | GGWCC | 4 cut(s) | 237, 295, 318, 327 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 531, 564 |
| BanII | GRGCYC | 1 cut(s) | 165 |
| BauI | CACGAG | 1 cut(s) | 322 |
| BbsI | GAAGAC | 1 cut(s) | 338 |
| BbvI | GCAGC | 2 cut(s) | 404, 528 |
| BccI | CCATC | 7 cut(s) | 16, 196, 207, 355, 434, 547, 774 |
| BceAI | ACGGC | 2 cut(s) | 814, 864 |
| BciT130I | CCWGG | 1 cut(s) | 814 |
| BfaI | CTAG | 1 cut(s) | 510 |
| BfmI | CTRYAG | 1 cut(s) | 908 |
| BisI | GCNGC | 4 cut(s) | 266, 393, 517, 659 |
| BlsI | GCNGC | 4 cut(s) | 267, 394, 518, 660 |
| Bme1390I | CCNGG | 1 cut(s) | 814 |
| Bme18I | GGWCC | 4 cut(s) | 237, 295, 318, 327 |
| BmgT120I | GGNCC | 4 cut(s) | 237, 295, 318, 327 |
| BmiI | GGNNCC | 1 cut(s) | 162 |
| BmrFI | CCNGG | 1 cut(s) | 814 |
| BmrI | ACTGGG | 1 cut(s) | 834 |
| BmuI | ACTGGG | 1 cut(s) | 834 |
| BpiI | GAAGAC | 1 cut(s) | 338 |
| BpmI | CTGGAG | 1 cut(s) | 835 |
| Bpu10I | CCTNAGC | 2 cut(s) | 478, 662 |
| Bpu14I | TTCGAA | 1 cut(s) | 349 |
| Bsa29I | ATCGAT | 1 cut(s) | 774 |
| BsaJI | CCNNGG | 1 cut(s) | 52 |
| Bse1I | ACTGG | 2 cut(s) | 829, 842 |
| BseBI | CCWGG | 1 cut(s) | 814 |
| BseCI | ATCGAT | 1 cut(s) | 774 |
| BseDI | CCNNGG | 1 cut(s) | 52 |
| BseGI | GGATG | 6 cut(s) | 193, 436, 631, 736, 745, 838 |
| BseMII | CTCAG | 1 cut(s) | 492 |
| BseNI | ACTGG | 2 cut(s) | 829, 842 |
| BseRI | GAGGAG | 2 cut(s) | 197, 908 |
| BseXI | GCAGC | 2 cut(s) | 404, 528 |
| BshVI | ATCGAT | 1 cut(s) | 774 |
| Bsp119I | TTCGAA | 1 cut(s) | 349 |
| Bsp1286I | GDGCHC | 1 cut(s) | 165 |
| Bsp143I | GATC | 2 cut(s) | 3, 406 |
| Bsp19I | CCATGG | 1 cut(s) | 52 |
| BspACI | CCGC | 2 cut(s) | 265, 658 |
| BspCNI | CTCAG | 1 cut(s) | 491 |
| BspDI | ATCGAT | 1 cut(s) | 774 |
| BspLI | GGNNCC | 1 cut(s) | 162 |
| BspPI | GGATC | 1 cut(s) | 414 |
| BspT104I | TTCGAA | 1 cut(s) | 349 |
| BsrI | ACTGG | 2 cut(s) | 829, 842 |
| BssECI | CCNNGG | 1 cut(s) | 52 |
| BssMI | GATC | 2 cut(s) | 3, 406 |
| BssSI | CACGAG | 1 cut(s) | 322 |
| BssT1I | CCWWGG | 1 cut(s) | 52 |
| Bst2BI | CACGAG | 1 cut(s) | 322 |
| Bst2UI | CCWGG | 1 cut(s) | 814 |
| Bst4CI | ACNGT | 3 cut(s) | 196, 547, 647 |
| BstBI | TTCGAA | 1 cut(s) | 349 |
| BstC8I | GCNNGC | 1 cut(s) | 62 |
| BstDEI | CTNAG | 4 cut(s) | 81, 478, 612, 662 |
| BstDSI | CCRYGG | 1 cut(s) | 52 |
| BstF5I | GGATG | 6 cut(s) | 193, 436, 631, 736, 745, 838 |
| BstKTI | GATC | 2 cut(s) | 6, 409 |
| BstMBI | GATC | 2 cut(s) | 3, 406 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 658, 664 |
| BstNI | CCWGG | 1 cut(s) | 814 |
| BstNSI | RCATGY | 1 cut(s) | 372 |
| BstSCI | CCNGG | 1 cut(s) | 812 |
| BstSFI | CTRYAG | 1 cut(s) | 908 |
| BstV1I | GCAGC | 2 cut(s) | 404, 528 |
| BstV2I | GAAGAC | 1 cut(s) | 338 |
| Bsu15I | ATCGAT | 1 cut(s) | 774 |
| BsuTUI | ATCGAT | 1 cut(s) | 774 |
| BtgI | CCRYGG | 1 cut(s) | 52 |
| BtsCI | GGATG | 6 cut(s) | 193, 436, 631, 736, 745, 838 |
| BtsI | GCAGTG | 2 cut(s) | 275, 402 |
| BtsIMutI | CAGTG | 3 cut(s) | 275, 402, 849 |
| Cac8I | GCNNGC | 1 cut(s) | 62 |
| Cfr13I | GGNCC | 4 cut(s) | 237, 295, 318, 327 |
| ClaI | ATCGAT | 1 cut(s) | 774 |
| CseI | GACGC | 1 cut(s) | 578 |
| Csp6I | GTAC | 3 cut(s) | 503, 540, 637 |
| CviAII | CATG | 5 cut(s) | 53, 157, 301, 369, 640 |
| CviQI | GTAC | 3 cut(s) | 503, 540, 637 |
| DdeI | CTNAG | 4 cut(s) | 81, 478, 612, 662 |
| DpnI | GATC | 2 cut(s) | 5, 408 |
| DpnII | GATC | 2 cut(s) | 3, 406 |
| Eco130I | CCWWGG | 1 cut(s) | 52 |
| Eco24I | GRGCYC | 1 cut(s) | 165 |
| Eco47I | GGWCC | 4 cut(s) | 237, 295, 318, 327 |
| Eco57I | CTGAAG | 1 cut(s) | 653 |
| EcoO109I | RGGNCCY | 2 cut(s) | 295, 318 |
| EcoRII | CCWGG | 1 cut(s) | 812 |
| EcoT14I | CCWWGG | 1 cut(s) | 52 |
| EcoT38I | GRGCYC | 1 cut(s) | 165 |
| ErhI | CCWWGG | 1 cut(s) | 52 |
| FaeI | CATG | 5 cut(s) | 56, 160, 304, 372, 643 |
| FatI | CATG | 5 cut(s) | 52, 156, 300, 368, 639 |
| Fnu4HI | GCNGC | 4 cut(s) | 266, 393, 517, 659 |
| FokI | GGATG | 6 cut(s) | 200, 443, 638, 743, 752, 825 |
| FriOI | GRGCYC | 1 cut(s) | 165 |
| Fsp4HI | GCNGC | 4 cut(s) | 266, 393, 517, 659 |
| FspBI | CTAG | 1 cut(s) | 510 |
| GluI | GCNGC | 4 cut(s) | 266, 393, 517, 659 |
| GsuI | CTGGAG | 1 cut(s) | 835 |
| HgaI | GACGC | 1 cut(s) | 578 |
| Hin1II | CATG | 5 cut(s) | 56, 160, 304, 372, 643 |
| HincII | GTYRAC | 1 cut(s) | 796 |
| HindII | GTYRAC | 1 cut(s) | 796 |
| HindIII | AAGCTT | 1 cut(s) | 31 |
| HinfI | GANTC | 2 cut(s) | 455, 896 |
| HphI | GGTGA | 3 cut(s) | 449, 562, 902 |
| Hpy166II | GTNNAC | 2 cut(s) | 327, 796 |
| Hpy188I | TCNGA | 2 cut(s) | 411, 672 |
| Hpy188III | TCNNGA | 1 cut(s) | 754 |
| Hpy8I | GTNNAC | 2 cut(s) | 327, 796 |
| Hpy99I | CGWCG | 1 cut(s) | 547 |
| HpyAV | CCTTC | 3 cut(s) | 345, 406, 603 |
| HpyCH4III | ACNGT | 3 cut(s) | 196, 547, 647 |
| HpyCH4IV | ACGT | 1 cut(s) | 525 |
| HpyCH4V | TGCA | 3 cut(s) | 284, 307, 368 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 658, 664 |
| HpyF3I | CTNAG | 4 cut(s) | 81, 478, 612, 662 |
| HpySE526I | ACGT | 1 cut(s) | 525 |
| Hsp92II | CATG | 5 cut(s) | 56, 160, 304, 372, 643 |
| Kzo9I | GATC | 2 cut(s) | 3, 406 |
| LmnI | GCTCC | 1 cut(s) | 160 |
| Lsp1109I | GCAGC | 2 cut(s) | 404, 528 |
| MaeI | CTAG | 1 cut(s) | 510 |
| MaeII | ACGT | 1 cut(s) | 525 |
| MaeIII | GTNAC | 2 cut(s) | 190, 844 |
| MalI | GATC | 2 cut(s) | 5, 408 |
| MboI | GATC | 2 cut(s) | 3, 406 |
| MboII | GAAGA | 3 cut(s) | 222, 338, 595 |
| MhlI | GDGCHC | 1 cut(s) | 165 |
| MluCI | AATT | 6 cut(s) | 67, 107, 120, 133, 673, 871 |
| MlyI | GAGTC | 1 cut(s) | 905 |
| MnlI | CCTC | 9 cut(s) | 66, 175, 178, 200, 228, 308, 331, 688, 886 |
| MseI | TTAA | 3 cut(s) | 36, 47, 566 |
| MslI | CAYNNNNRTG | 3 cut(s) | 16, 774, 776 |
| MspR9I | CCNGG | 1 cut(s) | 814 |
| MvaI | CCWGG | 1 cut(s) | 814 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 658, 664 |
| NcoI | CCATGG | 1 cut(s) | 52 |
| NdeII | GATC | 2 cut(s) | 3, 406 |
| NlaIII | CATG | 5 cut(s) | 56, 160, 304, 372, 643 |
| NlaIV | GGNNCC | 1 cut(s) | 162 |
| NmuCI | GTSAC | 2 cut(s) | 190, 844 |
| NspI | RCATGY | 1 cut(s) | 372 |
| NspV | TTCGAA | 1 cut(s) | 349 |
| OliI | CACNNNNGTG | 1 cut(s) | 16 |
| PfeI | GAWTC | 1 cut(s) | 455 |
| PkrI | GCNGC | 4 cut(s) | 267, 394, 518, 660 |
| PleI | GAGTC | 1 cut(s) | 904 |
| PpsI | GAGTC | 1 cut(s) | 904 |
| PpuMI | RGGWCCY | 2 cut(s) | 295, 318 |
| Psp5II | RGGWCCY | 2 cut(s) | 295, 318 |
| Psp6I | CCWGG | 1 cut(s) | 812 |
| PspGI | CCWGG | 1 cut(s) | 812 |
| PspN4I | GGNNCC | 1 cut(s) | 162 |
| PspPI | GGNCC | 4 cut(s) | 237, 295, 318, 327 |
| PspPPI | RGGWCCY | 2 cut(s) | 295, 318 |
| RsaI | GTAC | 3 cut(s) | 504, 541, 638 |
| RsaNI | GTAC | 3 cut(s) | 503, 540, 637 |
| RseI | CAYNNNNRTG | 3 cut(s) | 16, 774, 776 |
| SaqAI | TTAA | 3 cut(s) | 36, 47, 566 |
| SatI | GCNGC | 4 cut(s) | 266, 393, 517, 659 |
| Sau3AI | GATC | 2 cut(s) | 3, 406 |
| Sau96I | GGNCC | 4 cut(s) | 237, 295, 318, 327 |
| SchI | GAGTC | 1 cut(s) | 905 |
| ScrFI | CCNGG | 1 cut(s) | 814 |
| SduI | GDGCHC | 1 cut(s) | 165 |
| SfcI | CTRYAG | 1 cut(s) | 908 |
| SfuI | TTCGAA | 1 cut(s) | 349 |
| SinI | GGWCC | 4 cut(s) | 237, 295, 318, 327 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 16, 774, 776 |
| Sse9I | AATT | 6 cut(s) | 67, 107, 120, 133, 673, 871 |
| SsiI | CCGC | 2 cut(s) | 265, 658 |
| SspMI | CTAG | 1 cut(s) | 510 |
| StyD4I | CCNGG | 1 cut(s) | 812 |
| StyI | CCWWGG | 1 cut(s) | 52 |
| TaaI | ACNGT | 3 cut(s) | 196, 547, 647 |
| TaiI | ACGT | 1 cut(s) | 528 |
| TaqI | TCGA | 3 cut(s) | 349, 755, 774 |
| TasI | AATT | 6 cut(s) | 67, 107, 120, 133, 673, 871 |
| TatI | WGTACW | 1 cut(s) | 636 |
| TauI | GCSGC | 2 cut(s) | 268, 661 |
| TfiI | GAWTC | 1 cut(s) | 455 |
| Tru1I | TTAA | 3 cut(s) | 36, 47, 566 |
| Tru9I | TTAA | 3 cut(s) | 36, 47, 566 |
| TscAI | CASTG | 3 cut(s) | 275, 402, 849 |
| TseFI | GTSAC | 2 cut(s) | 190, 844 |
| TseI | GCWGC | 2 cut(s) | 392, 516 |
| Tsp45I | GTSAC | 2 cut(s) | 190, 844 |
| TspDTI | ATGAA | 3 cut(s) | 145, 595, 656 |
| TspGWI | ACGGA | 1 cut(s) | 849 |
| TspRI | CASTG | 3 cut(s) | 275, 402, 849 |
| VpaK11BI | GGWCC | 4 cut(s) | 237, 295, 318, 327 |
| XapI | RAATTY | 2 cut(s) | 107, 871 |
| XceI | RCATGY | 1 cut(s) | 372 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 15, 247 |
| XspI | CTAG | 1 cut(s) | 510 |