ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 481 |
| AciI | CCGC | 2 cut(s) | 75, 434 |
| AclI | AACGTT | 1 cut(s) | 136 |
| AclWI | GGATC | 1 cut(s) | 66 |
| AcoI | YGGCCR | 2 cut(s) | 325, 409 |
| AcsI | RAATTY | 1 cut(s) | 216 |
| AfaI | GTAC | 1 cut(s) | 79 |
| AgsI | TTSAA | 3 cut(s) | 211, 517, 524 |
| AjiI | CACGTC | 1 cut(s) | 454 |
| AjnI | CCWGG | 1 cut(s) | 392 |
| AluBI | AGCT | 1 cut(s) | 361 |
| AluI | AGCT | 1 cut(s) | 361 |
| Alw26I | GTCTC | 1 cut(s) | 256 |
| AlwI | GGATC | 1 cut(s) | 66 |
| AoxI | GGCC | 2 cut(s) | 325, 409 |
| ApeKI | GCWGC | 1 cut(s) | 151 |
| ApoI | RAATTY | 1 cut(s) | 216 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 40 |
| AspS9I | GGNCC | 2 cut(s) | 245, 501 |
| AsuHPI | GGTGA | 1 cut(s) | 311 |
| AvaII | GGWCC | 2 cut(s) | 245, 501 |
| BalI | TGGCCA | 2 cut(s) | 327, 411 |
| BanI | GGYRCC | 1 cut(s) | 481 |
| BbsI | GAAGAC | 1 cut(s) | 572 |
| BbvI | GCAGC | 1 cut(s) | 138 |
| BccI | CCATC | 2 cut(s) | 336, 513 |
| BceAI | ACGGC | 2 cut(s) | 88, 495 |
| BciT130I | CCWGG | 1 cut(s) | 394 |
| BcoDI | GTCTC | 1 cut(s) | 256 |
| BfaI | CTAG | 3 cut(s) | 290, 417, 438 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 479 |
| BisI | GCNGC | 2 cut(s) | 152, 434 |
| BlsI | GCNGC | 2 cut(s) | 153, 435 |
| Bme1390I | CCNGG | 1 cut(s) | 394 |
| Bme18I | GGWCC | 2 cut(s) | 245, 501 |
| BmgBI | CACGTC | 1 cut(s) | 454 |
| BmgT120I | GGNCC | 2 cut(s) | 245, 501 |
| BmiI | GGNNCC | 2 cut(s) | 483, 503 |
| BmrFI | CCNGG | 1 cut(s) | 394 |
| BmsI | GCATC | 2 cut(s) | 169, 274 |
| BpiI | GAAGAC | 1 cut(s) | 572 |
| BpmI | CTGGAG | 1 cut(s) | 115 |
| BsaAI | YACGTR | 1 cut(s) | 161 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| Bse1I | ACTGG | 4 cut(s) | 85, 98, 109, 536 |
| Bse3DI | GCAATG | 1 cut(s) | 485 |
| BseBI | CCWGG | 1 cut(s) | 394 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseGI | GGATG | 1 cut(s) | 132 |
| BseMI | GCAATG | 1 cut(s) | 485 |
| BseMII | CTCAG | 1 cut(s) | 459 |
| BseNI | ACTGG | 4 cut(s) | 85, 98, 109, 536 |
| BseXI | GCAGC | 1 cut(s) | 138 |
| BseYI | CCCAGC | 1 cut(s) | 357 |
| BsgI | GTGCAG | 1 cut(s) | 41 |
| BshFI | GGCC | 2 cut(s) | 327, 411 |
| BshNI | GGYRCC | 1 cut(s) | 481 |
| BslFI | GGGAC | 1 cut(s) | 440 |
| BsmAI | GTCTC | 1 cut(s) | 256 |
| BsmFI | GGGAC | 1 cut(s) | 440 |
| BsnI | GGCC | 2 cut(s) | 327, 411 |
| Bsp143I | GATC | 2 cut(s) | 58, 448 |
| Bsp19I | CCATGG | 1 cut(s) | 188 |
| BspACI | CCGC | 2 cut(s) | 75, 434 |
| BspANI | GGCC | 2 cut(s) | 327, 411 |
| BspCNI | CTCAG | 1 cut(s) | 458 |
| BspLI | GGNNCC | 2 cut(s) | 483, 503 |
| BspPI | GGATC | 1 cut(s) | 66 |
| BspT107I | GGYRCC | 1 cut(s) | 481 |
| BsrDI | GCAATG | 1 cut(s) | 485 |
| BsrI | ACTGG | 4 cut(s) | 85, 98, 109, 536 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| BssMI | GATC | 2 cut(s) | 58, 448 |
| BssT1I | CCWWGG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 1 cut(s) | 394 |
| Bst4CI | ACNGT | 2 cut(s) | 40, 116 |
| BstBAI | YACGTR | 1 cut(s) | 161 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 475 |
| BstDEI | CTNAG | 3 cut(s) | 313, 445, 492 |
| BstDSI | CCRYGG | 1 cut(s) | 188 |
| BstF5I | GGATG | 1 cut(s) | 132 |
| BstKTI | GATC | 2 cut(s) | 61, 451 |
| BstMAI | GTCTC | 1 cut(s) | 256 |
| BstMBI | GATC | 2 cut(s) | 58, 448 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 479 |
| BstNI | CCWGG | 1 cut(s) | 394 |
| BstSCI | CCNGG | 1 cut(s) | 392 |
| BstV1I | GCAGC | 1 cut(s) | 138 |
| BstV2I | GAAGAC | 1 cut(s) | 572 |
| BstX2I | RGATCY | 1 cut(s) | 58 |
| BstYI | RGATCY | 1 cut(s) | 58 |
| BsuRI | GGCC | 2 cut(s) | 327, 411 |
| BtgI | CCRYGG | 1 cut(s) | 188 |
| BtrI | CACGTC | 1 cut(s) | 454 |
| BtsCI | GGATG | 1 cut(s) | 132 |
| BtsI | GCAGTG | 1 cut(s) | 182 |
| BtsIMutI | CAGTG | 2 cut(s) | 91, 182 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 475 |
| Cfr13I | GGNCC | 2 cut(s) | 245, 501 |
| Csp6I | GTAC | 1 cut(s) | 78 |
| CviAII | CATG | 6 cut(s) | 147, 189, 323, 339, 413, 470 |
| CviJI | RGCY | 5 cut(s) | 108, 151, 327, 361, 411 |
| CviKI_1 | RGCY | 5 cut(s) | 108, 151, 327, 361, 411 |
| CviQI | GTAC | 1 cut(s) | 78 |
| DdeI | CTNAG | 3 cut(s) | 313, 445, 492 |
| DpnI | GATC | 2 cut(s) | 60, 450 |
| DpnII | GATC | 2 cut(s) | 58, 448 |
| EaeI | YGGCCR | 2 cut(s) | 325, 409 |
| Eco130I | CCWWGG | 1 cut(s) | 188 |
| Eco32I | GATATC | 1 cut(s) | 403 |
| Eco47I | GGWCC | 2 cut(s) | 245, 501 |
| EcoO109I | RGGNCCY | 1 cut(s) | 501 |
| EcoRII | CCWGG | 1 cut(s) | 392 |
| EcoRV | GATATC | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 1 cut(s) | 188 |
| ErhI | CCWWGG | 1 cut(s) | 188 |
| FaeI | CATG | 6 cut(s) | 150, 192, 326, 342, 416, 473 |
| FaqI | GGGAC | 1 cut(s) | 440 |
| FatI | CATG | 6 cut(s) | 146, 188, 322, 338, 412, 469 |
| FauNDI | CATATG | 2 cut(s) | 54, 429 |
| Fnu4HI | GCNGC | 2 cut(s) | 152, 434 |
| FokI | GGATG | 1 cut(s) | 139 |
| Fsp4HI | GCNGC | 2 cut(s) | 152, 434 |
| FspBI | CTAG | 3 cut(s) | 290, 417, 438 |
| GluI | GCNGC | 2 cut(s) | 152, 434 |
| GsaI | CCCAGC | 1 cut(s) | 361 |
| GsuI | CTGGAG | 1 cut(s) | 115 |
| HaeIII | GGCC | 2 cut(s) | 327, 411 |
| Hin1II | CATG | 6 cut(s) | 150, 192, 326, 342, 416, 473 |
| HinfI | GANTC | 3 cut(s) | 443, 513, 524 |
| HphI | GGTGA | 1 cut(s) | 311 |
| Hpy188I | TCNGA | 2 cut(s) | 249, 448 |
| Hpy188III | TCNNGA | 3 cut(s) | 281, 290, 368 |
| HpyAV | CCTTC | 2 cut(s) | 236, 492 |
| HpyCH4III | ACNGT | 2 cut(s) | 40, 116 |
| HpyCH4IV | ACGT | 3 cut(s) | 136, 160, 453 |
| HpyCH4V | TGCA | 5 cut(s) | 22, 122, 182, 384, 538 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 479 |
| HpyF3I | CTNAG | 3 cut(s) | 313, 445, 492 |
| HpySE526I | ACGT | 3 cut(s) | 136, 160, 453 |
| Hsp92II | CATG | 6 cut(s) | 150, 192, 326, 342, 416, 473 |
| Kzo9I | GATC | 2 cut(s) | 58, 448 |
| LmnI | GCTCC | 1 cut(s) | 366 |
| Lsp1109I | GCAGC | 1 cut(s) | 138 |
| LweI | GCATC | 2 cut(s) | 169, 274 |
| MaeI | CTAG | 3 cut(s) | 290, 417, 438 |
| MaeII | ACGT | 3 cut(s) | 136, 160, 453 |
| MaeIII | GTNAC | 3 cut(s) | 11, 156, 440 |
| MalI | GATC | 2 cut(s) | 60, 450 |
| MboI | GATC | 2 cut(s) | 58, 448 |
| MboII | GAAGA | 2 cut(s) | 40, 381 |
| MflI | RGATCY | 1 cut(s) | 58 |
| MlsI | TGGCCA | 2 cut(s) | 327, 411 |
| MluCI | AATT | 1 cut(s) | 216 |
| MluNI | TGGCCA | 2 cut(s) | 327, 411 |
| MlyI | GAGTC | 1 cut(s) | 437 |
| MnlI | CCTC | 1 cut(s) | 99 |
| Mox20I | TGGCCA | 2 cut(s) | 327, 411 |
| MroXI | GAANNNNTTC | 1 cut(s) | 40 |
| MscI | TGGCCA | 2 cut(s) | 327, 411 |
| MslI | CAYNNNNRTG | 1 cut(s) | 187 |
| Msp20I | TGGCCA | 2 cut(s) | 327, 411 |
| MspR9I | CCNGG | 1 cut(s) | 394 |
| MvaI | CCWGG | 1 cut(s) | 394 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 479 |
| NcoI | CCATGG | 1 cut(s) | 188 |
| NdeI | CATATG | 2 cut(s) | 54, 429 |
| NdeII | GATC | 2 cut(s) | 58, 448 |
| NlaIII | CATG | 6 cut(s) | 150, 192, 326, 342, 416, 473 |
| NlaIV | GGNNCC | 2 cut(s) | 483, 503 |
| NmuCI | GTSAC | 2 cut(s) | 11, 440 |
| PdmI | GAANNNNTTC | 1 cut(s) | 40 |
| PfeI | GAWTC | 2 cut(s) | 513, 524 |
| PkrI | GCNGC | 2 cut(s) | 153, 435 |
| PleI | GAGTC | 1 cut(s) | 437 |
| PpsI | GAGTC | 1 cut(s) | 437 |
| Ppu21I | YACGTR | 1 cut(s) | 161 |
| PpuMI | RGGWCCY | 1 cut(s) | 501 |
| Psp1406I | AACGTT | 1 cut(s) | 136 |
| Psp5II | RGGWCCY | 1 cut(s) | 501 |
| Psp6I | CCWGG | 1 cut(s) | 392 |
| PspFI | CCCAGC | 1 cut(s) | 357 |
| PspGI | CCWGG | 1 cut(s) | 392 |
| PspN4I | GGNNCC | 2 cut(s) | 483, 503 |
| PspPI | GGNCC | 2 cut(s) | 245, 501 |
| PspPPI | RGGWCCY | 1 cut(s) | 501 |
| PsuI | RGATCY | 1 cut(s) | 58 |
| RsaI | GTAC | 1 cut(s) | 79 |
| RsaNI | GTAC | 1 cut(s) | 78 |
| RseI | CAYNNNNRTG | 1 cut(s) | 187 |
| SatI | GCNGC | 2 cut(s) | 152, 434 |
| Sau3AI | GATC | 2 cut(s) | 58, 448 |
| Sau96I | GGNCC | 2 cut(s) | 245, 501 |
| SchI | GAGTC | 1 cut(s) | 437 |
| ScrFI | CCNGG | 1 cut(s) | 394 |
| SetI | ASST | 5 cut(s) | 139, 163, 247, 363, 456 |
| SfaNI | GCATC | 2 cut(s) | 169, 274 |
| SinI | GGWCC | 2 cut(s) | 245, 501 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 187 |
| Sse9I | AATT | 1 cut(s) | 216 |
| SsiI | CCGC | 2 cut(s) | 75, 434 |
| SspMI | CTAG | 3 cut(s) | 290, 417, 438 |
| StyD4I | CCNGG | 1 cut(s) | 392 |
| StyI | CCWWGG | 1 cut(s) | 188 |
| TaaI | ACNGT | 2 cut(s) | 40, 116 |
| TaiI | ACGT | 3 cut(s) | 139, 163, 456 |
| TaqI | TCGA | 2 cut(s) | 335, 350 |
| TasI | AATT | 1 cut(s) | 216 |
| TauI | GCSGC | 1 cut(s) | 436 |
| TfiI | GAWTC | 2 cut(s) | 513, 524 |
| TscAI | CASTG | 2 cut(s) | 98, 189 |
| TseFI | GTSAC | 2 cut(s) | 11, 440 |
| TseI | GCWGC | 1 cut(s) | 151 |
| Tsp45I | GTSAC | 2 cut(s) | 11, 440 |
| TspDTI | ATGAA | 5 cut(s) | 55, 135, 228, 311, 458 |
| TspGWI | ACGGA | 2 cut(s) | 139, 353 |
| TspRI | CASTG | 2 cut(s) | 98, 189 |
| VpaK11BI | GGWCC | 2 cut(s) | 245, 501 |
| XapI | RAATTY | 1 cut(s) | 216 |
| XbaI | TCTAGA | 1 cut(s) | 289 |
| XmnI | GAANNNNTTC | 1 cut(s) | 40 |
| XspI | CTAG | 3 cut(s) | 290, 417, 438 |