ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 237 |
| Acc16I | TGCGCA | 1 cut(s) | 351 |
| AccII | CGCG | 2 cut(s) | 222, 369 |
| AccIII | TCCGGA | 1 cut(s) | 197 |
| AciI | CCGC | 5 cut(s) | 251, 438, 500, 742, 1034 |
| AclWI | GGATC | 1 cut(s) | 543 |
| AcuI | CTGAAG | 2 cut(s) | 166, 948 |
| AcyI | GRCGYC | 1 cut(s) | 234 |
| AfaI | GTAC | 3 cut(s) | 299, 679, 950 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 530, 628 |
| AgsI | TTSAA | 3 cut(s) | 151, 650, 730 |
| AjnI | CCWGG | 3 cut(s) | 204, 300, 1056 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 437, 469, 977, 1009 |
| AleI | CACNNNNGTG | 1 cut(s) | 672 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1010, 1042 |
| AluBI | AGCT | 3 cut(s) | 320, 980, 1073 |
| AluI | AGCT | 3 cut(s) | 320, 980, 1073 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| AlwI | GGATC | 1 cut(s) | 543 |
| Aor13HI | TCCGGA | 1 cut(s) | 197 |
| AoxI | GGCC | 5 cut(s) | 174, 202, 304, 519, 744 |
| ApeKI | GCWGC | 6 cut(s) | 464, 467, 566, 697, 739, 832 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 292, 801 |
| AspLEI | GCGC | 5 cut(s) | 222, 327, 352, 369, 382 |
| AspS9I | GGNCC | 7 cut(s) | 304, 487, 520, 619, 744, 906, 1054 |
| AsuC2I | CCSGG | 1 cut(s) | 260 |
| AsuHPI | GGTGA | 3 cut(s) | 47, 947, 1100 |
| AvaII | GGWCC | 4 cut(s) | 487, 619, 906, 1054 |
| AxyI | CCTNAGG | 1 cut(s) | 1137 |
| BbsI | GAAGAC | 1 cut(s) | 172 |
| BbvI | GCAGC | 6 cut(s) | 476, 479, 553, 709, 751, 844 |
| BccI | CCATC | 3 cut(s) | 218, 645, 766 |
| BceAI | ACGGC | 2 cut(s) | 161, 1047 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 13, 47, 453, 487 |
| BciT130I | CCWGG | 3 cut(s) | 206, 302, 1058 |
| BclI | TGATCA | 1 cut(s) | 1096 |
| BcnI | CCSGG | 1 cut(s) | 260 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BfaI | CTAG | 3 cut(s) | 504, 794, 1146 |
| BfmI | CTRYAG | 1 cut(s) | 1130 |
| BfoI | RGCGCY | 1 cut(s) | 328 |
| BisI | GCNGC | 9 cut(s) | 252, 465, 468, 501, 567, 698, 740, 833, 1035 |
| BlpI | GCTNAGC | 2 cut(s) | 321, 882 |
| BlsI | GCNGC | 9 cut(s) | 253, 466, 469, 502, 568, 699, 741, 834, 1036 |
| BmcAI | AGTACT | 1 cut(s) | 950 |
| Bme1390I | CCNGG | 4 cut(s) | 206, 260, 302, 1058 |
| Bme18I | GGWCC | 4 cut(s) | 487, 619, 906, 1054 |
| BmgT120I | GGNCC | 7 cut(s) | 304, 487, 520, 619, 744, 906, 1054 |
| BmiI | GGNNCC | 2 cut(s) | 522, 620 |
| BmrFI | CCNGG | 4 cut(s) | 206, 260, 302, 1058 |
| BmsI | GCATC | 5 cut(s) | 31, 345, 361, 485, 974 |
| BpiI | GAAGAC | 1 cut(s) | 172 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 321, 882 |
| BpuMI | CCSGG | 1 cut(s) | 260 |
| BsaAI | YACGTR | 1 cut(s) | 785 |
| BsaHI | GRCGYC | 1 cut(s) | 234 |
| BsaJI | CCNNGG | 4 cut(s) | 301, 909, 1029, 1057 |
| BsaWI | WCCGGW | 1 cut(s) | 197 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 426, 456 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 530, 628 |
| Bse1I | ACTGG | 2 cut(s) | 867, 1025 |
| Bse21I | CCTNAGG | 1 cut(s) | 1137 |
| BseAI | TCCGGA | 1 cut(s) | 197 |
| BseBI | CCWGG | 3 cut(s) | 206, 302, 1058 |
| BseDI | CCNNGG | 4 cut(s) | 301, 909, 1029, 1057 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 530, 628 |
| BseMII | CTCAG | 3 cut(s) | 312, 545, 873 |
| BseNI | ACTGG | 2 cut(s) | 867, 1025 |
| BseXI | GCAGC | 6 cut(s) | 476, 479, 553, 709, 751, 844 |
| BsgI | GTGCAG | 3 cut(s) | 71, 716, 851 |
| Bsh1236I | CGCG | 2 cut(s) | 222, 369 |
| BshFI | GGCC | 5 cut(s) | 176, 204, 306, 521, 746 |
| BsiSI | CCGG | 3 cut(s) | 86, 198, 259 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 530, 628 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsnI | GGCC | 5 cut(s) | 176, 204, 306, 521, 746 |
| Bsp13I | TCCGGA | 1 cut(s) | 197 |
| Bsp143I | GATC | 4 cut(s) | 6, 397, 535, 1096 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 321, 882 |
| BspACI | CCGC | 5 cut(s) | 251, 438, 500, 742, 1034 |
| BspANI | GGCC | 5 cut(s) | 176, 204, 306, 521, 746 |
| BspCNI | CTCAG | 3 cut(s) | 313, 546, 874 |
| BspEI | TCCGGA | 1 cut(s) | 197 |
| BspFNI | CGCG | 2 cut(s) | 222, 369 |
| BspLI | GGNNCC | 2 cut(s) | 522, 620 |
| BspPI | GGATC | 1 cut(s) | 543 |
| BsrI | ACTGG | 2 cut(s) | 867, 1025 |
| BssECI | CCNNGG | 4 cut(s) | 301, 909, 1029, 1057 |
| BssMI | GATC | 4 cut(s) | 6, 397, 535, 1096 |
| BssNI | GRCGYC | 1 cut(s) | 234 |
| BssT1I | CCWWGG | 1 cut(s) | 909 |
| Bst2UI | CCWGG | 3 cut(s) | 206, 302, 1058 |
| Bst4CI | ACNGT | 2 cut(s) | 386, 959 |
| Bst6I | CTCTTC | 2 cut(s) | 218, 1041 |
| BstACI | GRCGYC | 1 cut(s) | 234 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 364 |
| BstBAI | YACGTR | 1 cut(s) | 785 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 744 |
| BstDEI | CTNAG | 7 cut(s) | 101, 111, 321, 554, 882, 981, 1137 |
| BstDSI | CCRYGG | 1 cut(s) | 1029 |
| BstFNI | CGCG | 2 cut(s) | 222, 369 |
| BstH2I | RGCGCY | 1 cut(s) | 328 |
| BstHHI | GCGC | 5 cut(s) | 222, 327, 352, 369, 382 |
| BstKTI | GATC | 4 cut(s) | 9, 400, 538, 1099 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 4 cut(s) | 6, 397, 535, 1096 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 248, 347, 364, 473 |
| BstNI | CCWGG | 3 cut(s) | 206, 302, 1058 |
| BstSCI | CCNGG | 4 cut(s) | 204, 258, 300, 1056 |
| BstSFI | CTRYAG | 1 cut(s) | 1130 |
| BstSNI | TACGTA | 1 cut(s) | 785 |
| BstUI | CGCG | 2 cut(s) | 222, 369 |
| BstV1I | GCAGC | 6 cut(s) | 476, 479, 553, 709, 751, 844 |
| BstV2I | GAAGAC | 1 cut(s) | 172 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 674 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1137 |
| BsuRI | GGCC | 5 cut(s) | 176, 204, 306, 521, 746 |
| BtgI | CCRYGG | 1 cut(s) | 1029 |
| BtgZI | GCGATG | 2 cut(s) | 237, 384 |
| BtsI | GCAGTG | 1 cut(s) | 575 |
| BtsIMutI | CAGTG | 2 cut(s) | 382, 575 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 744 |
| CfoI | GCGC | 5 cut(s) | 222, 327, 352, 369, 382 |
| Cfr13I | GGNCC | 7 cut(s) | 304, 487, 520, 619, 744, 906, 1054 |
| CseI | GACGC | 1 cut(s) | 459 |
| Csp6I | GTAC | 3 cut(s) | 298, 678, 949 |
| CviAII | CATG | 6 cut(s) | 10, 133, 395, 480, 530, 918 |
| CviQI | GTAC | 3 cut(s) | 298, 678, 949 |
| DdeI | CTNAG | 7 cut(s) | 101, 111, 321, 554, 882, 981, 1137 |
| DpnI | GATC | 4 cut(s) | 8, 399, 537, 1098 |
| DpnII | GATC | 4 cut(s) | 6, 397, 535, 1096 |
| Eam1104I | CTCTTC | 2 cut(s) | 218, 1041 |
| EarI | CTCTTC | 2 cut(s) | 218, 1041 |
| Eco105I | TACGTA | 1 cut(s) | 785 |
| Eco130I | CCWWGG | 1 cut(s) | 909 |
| Eco147I | AGGCCT | 1 cut(s) | 204 |
| Eco47I | GGWCC | 4 cut(s) | 487, 619, 906, 1054 |
| Eco57I | CTGAAG | 2 cut(s) | 166, 948 |
| Eco81I | CCTNAGG | 1 cut(s) | 1137 |
| EcoRII | CCWGG | 3 cut(s) | 204, 300, 1056 |
| EcoT14I | CCWWGG | 1 cut(s) | 909 |
| EcoT22I | ATGCAT | 1 cut(s) | 714 |
| ErhI | CCWWGG | 1 cut(s) | 909 |
| FaeI | CATG | 6 cut(s) | 13, 136, 398, 483, 533, 921 |
| FatI | CATG | 6 cut(s) | 9, 132, 394, 479, 529, 917 |
| FauI | CCCGC | 1 cut(s) | 735 |
| FauNDI | CATATG | 1 cut(s) | 1107 |
| FbaI | TGATCA | 1 cut(s) | 1096 |
| Fnu4HI | GCNGC | 9 cut(s) | 252, 465, 468, 501, 567, 698, 740, 833, 1035 |
| Fsp4HI | GCNGC | 9 cut(s) | 252, 465, 468, 501, 567, 698, 740, 833, 1035 |
| FspBI | CTAG | 3 cut(s) | 504, 794, 1146 |
| FspI | TGCGCA | 1 cut(s) | 351 |
| GlaI | GCGC | 5 cut(s) | 221, 326, 351, 368, 381 |
| GluI | GCNGC | 9 cut(s) | 252, 465, 468, 501, 567, 698, 740, 833, 1035 |
| HaeII | RGCGCY | 1 cut(s) | 328 |
| HaeIII | GGCC | 5 cut(s) | 176, 204, 306, 521, 746 |
| HapII | CCGG | 3 cut(s) | 86, 198, 259 |
| HgaI | GACGC | 1 cut(s) | 459 |
| HhaI | GCGC | 5 cut(s) | 222, 327, 352, 369, 382 |
| Hin1I | GRCGYC | 1 cut(s) | 234 |
| Hin1II | CATG | 6 cut(s) | 13, 136, 398, 483, 533, 921 |
| Hin6I | GCGC | 5 cut(s) | 220, 325, 350, 367, 380 |
| HinP1I | GCGC | 5 cut(s) | 220, 325, 350, 367, 380 |
| HincII | GTYRAC | 2 cut(s) | 127, 924 |
| HindII | GTYRAC | 2 cut(s) | 127, 924 |
| HinfI | GANTC | 5 cut(s) | 30, 526, 608, 730, 970 |
| HpaII | CCGG | 3 cut(s) | 86, 198, 259 |
| HphI | GGTGA | 3 cut(s) | 47, 947, 1100 |
| Hpy166II | GTNNAC | 5 cut(s) | 127, 423, 487, 924, 1029 |
| Hpy188I | TCNGA | 4 cut(s) | 121, 165, 287, 823 |
| Hpy188III | TCNNGA | 3 cut(s) | 198, 230, 553 |
| Hpy8I | GTNNAC | 5 cut(s) | 127, 423, 487, 924, 1029 |
| Hpy99I | CGWCG | 3 cut(s) | 239, 475, 978 |
| HpyAV | CCTTC | 3 cut(s) | 145, 152, 923 |
| HpyCH4III | ACNGT | 2 cut(s) | 386, 959 |
| HpyCH4IV | ACGT | 3 cut(s) | 234, 669, 784 |
| HpyCH4V | TGCA | 7 cut(s) | 24, 52, 358, 394, 697, 712, 832 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 248, 347, 364, 473 |
| HpyF3I | CTNAG | 7 cut(s) | 101, 111, 321, 554, 882, 981, 1137 |
| HpySE526I | ACGT | 3 cut(s) | 234, 669, 784 |
| Hsp92I | GRCGYC | 1 cut(s) | 234 |
| Hsp92II | CATG | 6 cut(s) | 13, 136, 398, 483, 533, 921 |
| HspAI | GCGC | 5 cut(s) | 220, 325, 350, 367, 380 |
| Kpn2I | TCCGGA | 1 cut(s) | 197 |
| Ksp22I | TGATCA | 1 cut(s) | 1096 |
| Kzo9I | GATC | 4 cut(s) | 6, 397, 535, 1096 |
| Lsp1109I | GCAGC | 6 cut(s) | 476, 479, 553, 709, 751, 844 |
| LweI | GCATC | 5 cut(s) | 31, 345, 361, 485, 974 |
| MaeI | CTAG | 3 cut(s) | 504, 794, 1146 |
| MaeII | ACGT | 3 cut(s) | 234, 669, 784 |
| MaeIII | GTNAC | 2 cut(s) | 913, 1088 |
| MalI | GATC | 4 cut(s) | 8, 399, 537, 1098 |
| MboI | GATC | 4 cut(s) | 6, 397, 535, 1096 |
| MboII | GAAGA | 6 cut(s) | 88, 172, 205, 325, 846, 1058 |
| MluCI | AATT | 4 cut(s) | 19, 546, 642, 1123 |
| MlyI | GAGTC | 1 cut(s) | 617 |
| MmeI | TCCRAC | 1 cut(s) | 435 |
| MnlI | CCTC | 9 cut(s) | 20, 166, 181, 194, 338, 428, 759, 1042, 1108 |
| Mph1103I | ATGCAT | 1 cut(s) | 714 |
| MroI | TCCGGA | 1 cut(s) | 197 |
| MroXI | GAANNNNTTC | 2 cut(s) | 292, 801 |
| MseI | TTAA | 4 cut(s) | 362, 875, 1080, 1122 |
| MslI | CAYNNNNRTG | 2 cut(s) | 672, 1110 |
| MspA1I | CMGCKG | 1 cut(s) | 742 |
| MspI | CCGG | 3 cut(s) | 86, 198, 259 |
| MspR9I | CCNGG | 4 cut(s) | 206, 260, 302, 1058 |
| MvaI | CCWGG | 3 cut(s) | 206, 302, 1058 |
| MvnI | CGCG | 2 cut(s) | 222, 369 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 248, 347, 364, 473 |
| NciI | CCSGG | 1 cut(s) | 260 |
| NdeI | CATATG | 1 cut(s) | 1107 |
| NdeII | GATC | 4 cut(s) | 6, 397, 535, 1096 |
| NlaIII | CATG | 6 cut(s) | 13, 136, 398, 483, 533, 921 |
| NlaIV | GGNNCC | 2 cut(s) | 522, 620 |
| NmeAIII | GCCGAG | 1 cut(s) | 406 |
| NmuCI | GTSAC | 1 cut(s) | 1088 |
| NsbI | TGCGCA | 1 cut(s) | 351 |
| NsiI | ATGCAT | 1 cut(s) | 714 |
| OliI | CACNNNNGTG | 1 cut(s) | 672 |
| PceI | AGGCCT | 1 cut(s) | 204 |
| PdmI | GAANNNNTTC | 2 cut(s) | 292, 801 |
| PfeI | GAWTC | 4 cut(s) | 30, 526, 730, 970 |
| PkrI | GCNGC | 9 cut(s) | 253, 466, 469, 502, 568, 699, 741, 834, 1036 |
| PleI | GAGTC | 1 cut(s) | 616 |
| PpsI | GAGTC | 1 cut(s) | 616 |
| Ppu21I | YACGTR | 1 cut(s) | 785 |
| Psp6I | CCWGG | 3 cut(s) | 204, 300, 1056 |
| PspGI | CCWGG | 3 cut(s) | 204, 300, 1056 |
| PspN4I | GGNNCC | 2 cut(s) | 522, 620 |
| PspPI | GGNCC | 7 cut(s) | 304, 487, 520, 619, 744, 906, 1054 |
| RsaI | GTAC | 3 cut(s) | 299, 679, 950 |
| RsaNI | GTAC | 3 cut(s) | 298, 678, 949 |
| RseI | CAYNNNNRTG | 2 cut(s) | 672, 1110 |
| SaqAI | TTAA | 4 cut(s) | 362, 875, 1080, 1122 |
| SatI | GCNGC | 9 cut(s) | 252, 465, 468, 501, 567, 698, 740, 833, 1035 |
| Sau3AI | GATC | 4 cut(s) | 6, 397, 535, 1096 |
| Sau96I | GGNCC | 7 cut(s) | 304, 487, 520, 619, 744, 906, 1054 |
| ScaI | AGTACT | 1 cut(s) | 950 |
| SchI | GAGTC | 1 cut(s) | 617 |
| ScrFI | CCNGG | 4 cut(s) | 206, 260, 302, 1058 |
| SfaNI | GCATC | 5 cut(s) | 31, 345, 361, 485, 974 |
| SfcI | CTRYAG | 1 cut(s) | 1130 |
| SinI | GGWCC | 4 cut(s) | 487, 619, 906, 1054 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 672, 1110 |
| SnaBI | TACGTA | 1 cut(s) | 785 |
| Sse9I | AATT | 4 cut(s) | 19, 546, 642, 1123 |
| SseBI | AGGCCT | 1 cut(s) | 204 |
| SsiI | CCGC | 5 cut(s) | 251, 438, 500, 742, 1034 |
| SspMI | CTAG | 3 cut(s) | 504, 794, 1146 |
| StuI | AGGCCT | 1 cut(s) | 204 |
| StyD4I | CCNGG | 4 cut(s) | 204, 258, 300, 1056 |
| StyI | CCWWGG | 1 cut(s) | 909 |
| TaaI | ACNGT | 2 cut(s) | 386, 959 |
| TaiI | ACGT | 3 cut(s) | 237, 672, 787 |
| TaqI | TCGA | 2 cut(s) | 968, 973 |
| TasI | AATT | 4 cut(s) | 19, 546, 642, 1123 |
| TatI | WGTACW | 1 cut(s) | 948 |
| TauI | GCSGC | 3 cut(s) | 254, 503, 1037 |
| TfiI | GAWTC | 4 cut(s) | 30, 526, 730, 970 |
| Tru1I | TTAA | 4 cut(s) | 362, 875, 1080, 1122 |
| Tru9I | TTAA | 4 cut(s) | 362, 875, 1080, 1122 |
| TscAI | CASTG | 2 cut(s) | 389, 582 |
| TseFI | GTSAC | 1 cut(s) | 1088 |
| TseI | GCWGC | 6 cut(s) | 464, 467, 566, 697, 739, 832 |
| Tsp45I | GTSAC | 1 cut(s) | 1088 |
| TspDTI | ATGAA | 3 cut(s) | 518, 1124, 1169 |
| TspGWI | ACGGA | 1 cut(s) | 644 |
| TspRI | CASTG | 2 cut(s) | 389, 582 |
| VpaK11BI | GGWCC | 4 cut(s) | 487, 619, 906, 1054 |
| XmnI | GAANNNNTTC | 2 cut(s) | 292, 801 |
| XspI | CTAG | 3 cut(s) | 504, 794, 1146 |
| ZraI | GACGTC | 1 cut(s) | 235 |
| ZrmI | AGTACT | 1 cut(s) | 950 |
| Zsp2I | ATGCAT | 1 cut(s) | 714 |