ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 164 |
| AciI | CCGC | 1 cut(s) | 788 |
| AcsI | RAATTY | 1 cut(s) | 598 |
| AcuI | CTGAAG | 2 cut(s) | 335, 845 |
| AfaI | GTAC | 2 cut(s) | 151, 200 |
| AgsI | TTSAA | 4 cut(s) | 95, 568, 809, 937 |
| AjnI | CCWGG | 1 cut(s) | 718 |
| AleI | CACNNNNGTG | 1 cut(s) | 771 |
| Alw21I | GWGCWC | 1 cut(s) | 768 |
| Alw26I | GTCTC | 2 cut(s) | 227, 889 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 823 |
| AoxI | GGCC | 2 cut(s) | 8, 75 |
| ApaI | GGGCCC | 1 cut(s) | 79 |
| ApeKI | GCWGC | 3 cut(s) | 109, 140, 182 |
| ApoI | RAATTY | 1 cut(s) | 598 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 299 |
| AspA2I | CCTAGG | 1 cut(s) | 71 |
| AspLEI | GCGC | 1 cut(s) | 468 |
| AspS9I | GGNCC | 3 cut(s) | 8, 75, 76 |
| AsuC2I | CCSGG | 1 cut(s) | 433 |
| AsuHPI | GGTGA | 2 cut(s) | 203, 785 |
| AvrII | CCTAGG | 1 cut(s) | 71 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BanI | GGYRCC | 1 cut(s) | 164 |
| BanII | GRGCYC | 2 cut(s) | 79, 438 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 182, 214 |
| Bbv12I | GWGCWC | 1 cut(s) | 768 |
| BbvI | GCAGC | 3 cut(s) | 121, 152, 169 |
| BccI | CCATC | 4 cut(s) | 87, 119, 313, 722 |
| BciT130I | CCWGG | 1 cut(s) | 720 |
| BciVI | GTATCC | 2 cut(s) | 278, 714 |
| BclI | TGATCA | 1 cut(s) | 646 |
| BcnI | CCSGG | 1 cut(s) | 433 |
| BcoDI | GTCTC | 2 cut(s) | 227, 889 |
| BfaI | CTAG | 4 cut(s) | 72, 204, 215, 276 |
| BfuI | GTATCC | 2 cut(s) | 278, 714 |
| BisI | GCNGC | 4 cut(s) | 110, 141, 183, 789 |
| BlnI | CCTAGG | 1 cut(s) | 71 |
| BlsI | GCNGC | 4 cut(s) | 111, 142, 184, 790 |
| Bme1390I | CCNGG | 2 cut(s) | 433, 720 |
| BmgT120I | GGNCC | 3 cut(s) | 8, 75, 76 |
| BmiI | GGNNCC | 2 cut(s) | 77, 166 |
| BmrFI | CCNGG | 2 cut(s) | 433, 720 |
| BmsI | GCATC | 1 cut(s) | 300 |
| BpuMI | CCSGG | 1 cut(s) | 433 |
| Bsa29I | ATCGAT | 1 cut(s) | 308 |
| BsaI | GGTCTC | 1 cut(s) | 889 |
| BsaJI | CCNNGG | 2 cut(s) | 71, 718 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 491, 521 |
| BseBI | CCWGG | 1 cut(s) | 720 |
| BseCI | ATCGAT | 1 cut(s) | 308 |
| BseDI | CCNNGG | 2 cut(s) | 71, 718 |
| BseGI | GGATG | 2 cut(s) | 523, 738 |
| BseMII | CTCAG | 1 cut(s) | 174 |
| BseRI | GAGGAG | 3 cut(s) | 45, 512, 689 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| BseXI | GCAGC | 3 cut(s) | 121, 152, 169 |
| BshFI | GGCC | 2 cut(s) | 10, 77 |
| BshNI | GGYRCC | 1 cut(s) | 164 |
| BshVI | ATCGAT | 1 cut(s) | 308 |
| BsiHKAI | GWGCWC | 1 cut(s) | 768 |
| BsiSI | CCGG | 2 cut(s) | 11, 432 |
| BslFI | GGGAC | 1 cut(s) | 700 |
| BsmAI | GTCTC | 2 cut(s) | 227, 889 |
| BsmFI | GGGAC | 1 cut(s) | 700 |
| BsnI | GGCC | 2 cut(s) | 10, 77 |
| Bso31I | GGTCTC | 1 cut(s) | 889 |
| Bsp120I | GGGCCC | 1 cut(s) | 75 |
| Bsp1286I | GDGCHC | 3 cut(s) | 79, 438, 768 |
| Bsp1407I | TGTACA | 1 cut(s) | 198 |
| Bsp143I | GATC | 3 cut(s) | 19, 192, 646 |
| BspACI | CCGC | 1 cut(s) | 788 |
| BspANI | GGCC | 2 cut(s) | 10, 77 |
| BspCNI | CTCAG | 1 cut(s) | 173 |
| BspDI | ATCGAT | 1 cut(s) | 308 |
| BspLI | GGNNCC | 2 cut(s) | 77, 166 |
| BspT107I | GGYRCC | 1 cut(s) | 164 |
| BspTNI | GGTCTC | 1 cut(s) | 889 |
| BsrGI | TGTACA | 1 cut(s) | 198 |
| BssECI | CCNNGG | 2 cut(s) | 71, 718 |
| BssMI | GATC | 3 cut(s) | 19, 192, 646 |
| BssT1I | CCWWGG | 1 cut(s) | 71 |
| Bst2UI | CCWGG | 1 cut(s) | 720 |
| BstAUI | TGTACA | 1 cut(s) | 198 |
| BstDEI | CTNAG | 3 cut(s) | 160, 669, 711 |
| BstF5I | GGATG | 2 cut(s) | 523, 738 |
| BstHHI | GCGC | 1 cut(s) | 468 |
| BstKTI | GATC | 3 cut(s) | 22, 195, 649 |
| BstMAI | GTCTC | 2 cut(s) | 227, 889 |
| BstMBI | GATC | 3 cut(s) | 19, 192, 646 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 50, 826 |
| BstNI | CCWGG | 1 cut(s) | 720 |
| BstSCI | CCNGG | 2 cut(s) | 431, 718 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstV1I | GCAGC | 3 cut(s) | 121, 152, 169 |
| Bsu15I | ATCGAT | 1 cut(s) | 308 |
| BsuI | GTATCC | 2 cut(s) | 278, 714 |
| BsuRI | GGCC | 2 cut(s) | 10, 77 |
| BsuTUI | ATCGAT | 1 cut(s) | 308 |
| BtsCI | GGATG | 2 cut(s) | 523, 738 |
| CaiI | CAGNNNCTG | 1 cut(s) | 823 |
| CfoI | GCGC | 1 cut(s) | 468 |
| Cfr13I | GGNCC | 3 cut(s) | 8, 75, 76 |
| ClaI | ATCGAT | 1 cut(s) | 308 |
| Csp6I | GTAC | 2 cut(s) | 150, 199 |
| CviAII | CATG | 4 cut(s) | 23, 196, 405, 512 |
| CviQI | GTAC | 2 cut(s) | 150, 199 |
| DdeI | CTNAG | 3 cut(s) | 160, 669, 711 |
| DpnI | GATC | 3 cut(s) | 21, 194, 648 |
| DpnII | GATC | 3 cut(s) | 19, 192, 646 |
| Eco130I | CCWWGG | 1 cut(s) | 71 |
| Eco24I | GRGCYC | 2 cut(s) | 79, 438 |
| Eco31I | GGTCTC | 1 cut(s) | 889 |
| Eco32I | GATATC | 1 cut(s) | 157 |
| Eco57I | CTGAAG | 2 cut(s) | 335, 845 |
| EcoO109I | RGGNCCY | 1 cut(s) | 75 |
| EcoRII | CCWGG | 1 cut(s) | 718 |
| EcoRV | GATATC | 1 cut(s) | 157 |
| EcoT14I | CCWWGG | 1 cut(s) | 71 |
| EcoT38I | GRGCYC | 2 cut(s) | 79, 438 |
| ErhI | CCWWGG | 1 cut(s) | 71 |
| FaeI | CATG | 4 cut(s) | 26, 199, 408, 515 |
| FaqI | GGGAC | 1 cut(s) | 700 |
| FatI | CATG | 4 cut(s) | 22, 195, 404, 511 |
| FauNDI | CATATG | 1 cut(s) | 882 |
| FbaI | TGATCA | 1 cut(s) | 646 |
| Fnu4HI | GCNGC | 4 cut(s) | 110, 141, 183, 789 |
| FokI | GGATG | 2 cut(s) | 530, 745 |
| FriOI | GRGCYC | 2 cut(s) | 79, 438 |
| Fsp4HI | GCNGC | 4 cut(s) | 110, 141, 183, 789 |
| FspBI | CTAG | 4 cut(s) | 72, 204, 215, 276 |
| GlaI | GCGC | 1 cut(s) | 467 |
| GluI | GCNGC | 4 cut(s) | 110, 141, 183, 789 |
| HaeIII | GGCC | 2 cut(s) | 10, 77 |
| HapII | CCGG | 2 cut(s) | 11, 432 |
| HhaI | GCGC | 1 cut(s) | 468 |
| Hin1II | CATG | 4 cut(s) | 26, 199, 408, 515 |
| Hin6I | GCGC | 1 cut(s) | 466 |
| HinP1I | GCGC | 1 cut(s) | 466 |
| HindIII | AAGCTT | 2 cut(s) | 347, 570 |
| HinfI | GANTC | 4 cut(s) | 14, 208, 244, 584 |
| HpaII | CCGG | 2 cut(s) | 11, 432 |
| HphI | GGTGA | 2 cut(s) | 203, 785 |
| Hpy166II | GTNNAC | 1 cut(s) | 201 |
| Hpy188III | TCNNGA | 1 cut(s) | 875 |
| Hpy8I | GTNNAC | 1 cut(s) | 201 |
| HpyCH4V | TGCA | 4 cut(s) | 44, 65, 109, 481 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 50, 826 |
| HpyF3I | CTNAG | 3 cut(s) | 160, 669, 711 |
| Hsp92II | CATG | 4 cut(s) | 26, 199, 408, 515 |
| HspAI | GCGC | 1 cut(s) | 466 |
| Ksp22I | TGATCA | 1 cut(s) | 646 |
| Kzo9I | GATC | 3 cut(s) | 19, 192, 646 |
| LmnI | GCTCC | 2 cut(s) | 58, 763 |
| LpnPI | CCDG | 8 cut(s) | 24, 42, 147, 445, 705, 732, 798, 888 |
| Lsp1109I | GCAGC | 3 cut(s) | 121, 152, 169 |
| LweI | GCATC | 1 cut(s) | 300 |
| MaeI | CTAG | 4 cut(s) | 72, 204, 215, 276 |
| MaeIII | GTNAC | 1 cut(s) | 628 |
| MalI | GATC | 3 cut(s) | 21, 194, 648 |
| MboI | GATC | 3 cut(s) | 19, 192, 646 |
| MboII | GAAGA | 5 cut(s) | 199, 202, 340, 739, 797 |
| MfeI | CAATTG | 1 cut(s) | 251 |
| MhlI | GDGCHC | 3 cut(s) | 79, 438, 768 |
| MluCI | AATT | 8 cut(s) | 118, 251, 287, 399, 598, 835, 900, 942 |
| MlyI | GAGTC | 2 cut(s) | 8, 253 |
| MmeI | TCCRAC | 1 cut(s) | 775 |
| MroXI | GAANNNNTTC | 1 cut(s) | 299 |
| MseI | TTAA | 2 cut(s) | 87, 240 |
| MslI | CAYNNNNRTG | 3 cut(s) | 170, 516, 771 |
| MspI | CCGG | 2 cut(s) | 11, 432 |
| MspR9I | CCNGG | 2 cut(s) | 433, 720 |
| MunI | CAATTG | 1 cut(s) | 251 |
| MvaI | CCWGG | 1 cut(s) | 720 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 50, 826 |
| NciI | CCSGG | 1 cut(s) | 433 |
| NdeI | CATATG | 1 cut(s) | 882 |
| NdeII | GATC | 3 cut(s) | 19, 192, 646 |
| NlaIII | CATG | 4 cut(s) | 26, 199, 408, 515 |
| NlaIV | GGNNCC | 2 cut(s) | 77, 166 |
| OliI | CACNNNNGTG | 1 cut(s) | 771 |
| PdmI | GAANNNNTTC | 1 cut(s) | 299 |
| PfeI | GAWTC | 2 cut(s) | 208, 584 |
| PkrI | GCNGC | 4 cut(s) | 111, 142, 184, 790 |
| PleI | GAGTC | 2 cut(s) | 8, 252 |
| PpsI | GAGTC | 2 cut(s) | 8, 252 |
| Psp6I | CCWGG | 1 cut(s) | 718 |
| PspGI | CCWGG | 1 cut(s) | 718 |
| PspN4I | GGNNCC | 2 cut(s) | 77, 166 |
| PspOMI | GGGCCC | 1 cut(s) | 75 |
| PspPI | GGNCC | 3 cut(s) | 8, 75, 76 |
| PstNI | CAGNNNCTG | 1 cut(s) | 823 |
| RsaI | GTAC | 2 cut(s) | 151, 200 |
| RsaNI | GTAC | 2 cut(s) | 150, 199 |
| RseI | CAYNNNNRTG | 3 cut(s) | 170, 516, 771 |
| SaqAI | TTAA | 2 cut(s) | 87, 240 |
| SatI | GCNGC | 4 cut(s) | 110, 141, 183, 789 |
| Sau3AI | GATC | 3 cut(s) | 19, 192, 646 |
| Sau96I | GGNCC | 3 cut(s) | 8, 75, 76 |
| SchI | GAGTC | 2 cut(s) | 8, 253 |
| ScrFI | CCNGG | 2 cut(s) | 433, 720 |
| SduI | GDGCHC | 3 cut(s) | 79, 438, 768 |
| SfaNI | GCATC | 1 cut(s) | 300 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 170, 516, 771 |
| Sse9I | AATT | 8 cut(s) | 118, 251, 287, 399, 598, 835, 900, 942 |
| SsiI | CCGC | 1 cut(s) | 788 |
| SspMI | CTAG | 4 cut(s) | 72, 204, 215, 276 |
| StyD4I | CCNGG | 2 cut(s) | 431, 718 |
| StyI | CCWWGG | 1 cut(s) | 71 |
| TaqI | TCGA | 2 cut(s) | 263, 308 |
| TasI | AATT | 8 cut(s) | 118, 251, 287, 399, 598, 835, 900, 942 |
| TatI | WGTACW | 1 cut(s) | 198 |
| TauI | GCSGC | 1 cut(s) | 791 |
| TfiI | GAWTC | 2 cut(s) | 208, 584 |
| Tru1I | TTAA | 2 cut(s) | 87, 240 |
| Tru9I | TTAA | 2 cut(s) | 87, 240 |
| TseI | GCWGC | 3 cut(s) | 109, 140, 182 |
| TspDTI | ATGAA | 4 cut(s) | 308, 431, 656, 785 |
| TspGWI | ACGGA | 2 cut(s) | 167, 467 |
| XapI | RAATTY | 1 cut(s) | 598 |
| XmaJI | CCTAGG | 1 cut(s) | 71 |
| XmnI | GAANNNNTTC | 1 cut(s) | 299 |
| XspI | CTAG | 4 cut(s) | 72, 204, 215, 276 |