ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 543 |
| Acc65I | GGTACC | 1 cut(s) | 521 |
| AccB1I | GGYRCC | 1 cut(s) | 521 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 304, 582 |
| AciI | CCGC | 6 cut(s) | 197, 409, 572, 988, 1091, 1197 |
| AclWI | GGATC | 3 cut(s) | 159, 599, 1251 |
| AcsI | RAATTY | 2 cut(s) | 484, 907 |
| AcyI | GRCGYC | 1 cut(s) | 540 |
| AdeI | CACNNNGTG | 1 cut(s) | 928 |
| AfaI | GTAC | 5 cut(s) | 167, 523, 660, 1184, 1280 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 304, 531, 582 |
| AgsI | TTSAA | 2 cut(s) | 555, 1038 |
| AhlI | ACTAGT | 1 cut(s) | 1112 |
| AjnI | CCWGG | 2 cut(s) | 204, 476 |
| AluBI | AGCT | 5 cut(s) | 292, 781, 935, 1132, 1286 |
| AluI | AGCT | 5 cut(s) | 292, 781, 935, 1132, 1286 |
| Alw21I | GWGCWC | 1 cut(s) | 649 |
| Alw26I | GTCTC | 1 cut(s) | 485 |
| AlwI | GGATC | 3 cut(s) | 159, 599, 1251 |
| AoxI | GGCC | 4 cut(s) | 202, 383, 873, 1201 |
| ApeKI | GCWGC | 4 cut(s) | 289, 706, 932, 985 |
| ApoI | RAATTY | 2 cut(s) | 484, 907 |
| AseI | ATTAAT | 1 cut(s) | 1077 |
| Asp718I | GGTACC | 1 cut(s) | 521 |
| AspLEI | GCGC | 2 cut(s) | 58, 948 |
| AspS9I | GGNCC | 3 cut(s) | 383, 873, 1202 |
| AsuHPI | GGTGA | 4 cut(s) | 343, 449, 571, 911 |
| BaeGI | GKGCMC | 1 cut(s) | 1141 |
| BanI | GGYRCC | 1 cut(s) | 521 |
| BauI | CACGAG | 1 cut(s) | 682 |
| BbsI | GAAGAC | 1 cut(s) | 1158 |
| Bbv12I | GWGCWC | 1 cut(s) | 649 |
| BbvCI | CCTCAGC | 1 cut(s) | 59 |
| BbvI | GCAGC | 4 cut(s) | 301, 718, 944, 997 |
| BccI | CCATC | 5 cut(s) | 266, 584, 632, 733, 1202 |
| BceAI | ACGGC | 1 cut(s) | 1087 |
| BciT130I | CCWGG | 2 cut(s) | 206, 478 |
| BclI | TGATCA | 2 cut(s) | 69, 973 |
| BcoDI | GTCTC | 1 cut(s) | 485 |
| BcuI | ACTAGT | 1 cut(s) | 1112 |
| BfaI | CTAG | 3 cut(s) | 155, 452, 1113 |
| BfoI | RGCGCY | 1 cut(s) | 59 |
| BisI | GCNGC | 5 cut(s) | 290, 572, 707, 933, 986 |
| BlsI | GCNGC | 5 cut(s) | 291, 573, 708, 934, 987 |
| Bme1390I | CCNGG | 2 cut(s) | 206, 478 |
| BmgT120I | GGNCC | 3 cut(s) | 383, 873, 1202 |
| BmiI | GGNNCC | 1 cut(s) | 523 |
| BmrFI | CCNGG | 2 cut(s) | 206, 478 |
| BmsI | GCATC | 2 cut(s) | 396, 412 |
| BpiI | GAAGAC | 1 cut(s) | 1158 |
| Bpu10I | CCTNAGC | 2 cut(s) | 59, 1087 |
| BpuEI | CTTGAG | 2 cut(s) | 31, 202 |
| BsaBI | GATNNNNATC | 1 cut(s) | 231 |
| BsaHI | GRCGYC | 1 cut(s) | 540 |
| BsaJI | CCNNGG | 3 cut(s) | 326, 693, 876 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 192, 222 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 304, 531, 582 |
| Bse1I | ACTGG | 1 cut(s) | 1302 |
| Bse8I | GATNNNNATC | 1 cut(s) | 231 |
| BseBI | CCWGG | 2 cut(s) | 206, 478 |
| BseDI | CCNNGG | 3 cut(s) | 326, 693, 876 |
| BseGI | GGATG | 2 cut(s) | 10, 232 |
| BseJI | GATNNNNATC | 1 cut(s) | 231 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 304, 531, 582 |
| BseMII | CTCAG | 4 cut(s) | 50, 101, 780, 1262 |
| BseNI | ACTGG | 1 cut(s) | 1302 |
| BseSI | GKGCMC | 1 cut(s) | 1141 |
| BseXI | GCAGC | 4 cut(s) | 301, 718, 944, 997 |
| BsgI | GTGCAG | 1 cut(s) | 1276 |
| BshFI | GGCC | 4 cut(s) | 204, 385, 875, 1203 |
| BshNI | GGYRCC | 1 cut(s) | 521 |
| BsiHKAI | GWGCWC | 1 cut(s) | 649 |
| BslFI | GGGAC | 1 cut(s) | 978 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 304, 531, 582 |
| BsmAI | GTCTC | 1 cut(s) | 485 |
| BsmFI | GGGAC | 1 cut(s) | 978 |
| BsnI | GGCC | 4 cut(s) | 204, 385, 875, 1203 |
| Bsp1286I | GDGCHC | 2 cut(s) | 649, 1141 |
| BspACI | CCGC | 6 cut(s) | 197, 409, 572, 988, 1091, 1197 |
| BspANI | GGCC | 4 cut(s) | 204, 385, 875, 1203 |
| BspCNI | CTCAG | 4 cut(s) | 51, 100, 781, 1263 |
| BspHI | TCATGA | 1 cut(s) | 976 |
| BspLI | GGNNCC | 1 cut(s) | 523 |
| BspPI | GGATC | 3 cut(s) | 159, 599, 1251 |
| BspT107I | GGYRCC | 1 cut(s) | 521 |
| BsrI | ACTGG | 1 cut(s) | 1302 |
| BssECI | CCNNGG | 3 cut(s) | 326, 693, 876 |
| BssNI | GRCGYC | 1 cut(s) | 540 |
| BssSI | CACGAG | 1 cut(s) | 682 |
| BssT1I | CCWWGG | 3 cut(s) | 326, 693, 876 |
| Bst2BI | CACGAG | 1 cut(s) | 682 |
| Bst2UI | CCWGG | 2 cut(s) | 206, 478 |
| Bst4CI | ACNGT | 1 cut(s) | 969 |
| Bst6I | CTCTTC | 2 cut(s) | 327, 846 |
| BstACI | GRCGYC | 1 cut(s) | 540 |
| BstC8I | GCNNGC | 1 cut(s) | 1201 |
| BstDEI | CTNAG | 5 cut(s) | 59, 87, 789, 1087, 1271 |
| BstF5I | GGATG | 2 cut(s) | 10, 232 |
| BstH2I | RGCGCY | 1 cut(s) | 59 |
| BstHHI | GCGC | 2 cut(s) | 58, 948 |
| BstMAI | GTCTC | 1 cut(s) | 485 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 571 |
| BstNI | CCWGG | 2 cut(s) | 206, 478 |
| BstSCI | CCNGG | 2 cut(s) | 204, 476 |
| BstSLI | GKGCMC | 1 cut(s) | 1141 |
| BstV1I | GCAGC | 4 cut(s) | 301, 718, 944, 997 |
| BstV2I | GAAGAC | 1 cut(s) | 1158 |
| BstX2I | RGATCY | 1 cut(s) | 151 |
| BstYI | RGATCY | 1 cut(s) | 151 |
| BsuRI | GGCC | 4 cut(s) | 204, 385, 875, 1203 |
| BtsCI | GGATG | 2 cut(s) | 10, 232 |
| BtsIMutI | CAGTG | 1 cut(s) | 1295 |
| Cac8I | GCNNGC | 1 cut(s) | 1201 |
| CciI | TCATGA | 1 cut(s) | 976 |
| CfoI | GCGC | 2 cut(s) | 58, 948 |
| Cfr13I | GGNCC | 3 cut(s) | 383, 873, 1202 |
| CseI | GACGC | 1 cut(s) | 716 |
| CsiI | ACCWGGT | 1 cut(s) | 476 |
| Csp6I | GTAC | 5 cut(s) | 166, 522, 659, 1183, 1279 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1042, 1077 |
| CviAII | CATG | 6 cut(s) | 239, 257, 299, 531, 848, 977 |
| CviQI | GTAC | 5 cut(s) | 166, 522, 659, 1183, 1279 |
| DdeI | CTNAG | 5 cut(s) | 59, 87, 789, 1087, 1271 |
| DraI | TTTAAA | 1 cut(s) | 136 |
| DraIII | CACNNNGTG | 1 cut(s) | 928 |
| Eam1104I | CTCTTC | 2 cut(s) | 327, 846 |
| EarI | CTCTTC | 2 cut(s) | 327, 846 |
| Eco130I | CCWWGG | 3 cut(s) | 326, 693, 876 |
| Eco147I | AGGCCT | 1 cut(s) | 204 |
| EcoO109I | RGGNCCY | 1 cut(s) | 383 |
| EcoRII | CCWGG | 2 cut(s) | 204, 476 |
| EcoT14I | CCWWGG | 3 cut(s) | 326, 693, 876 |
| EcoT22I | ATGCAT | 1 cut(s) | 427 |
| ErhI | CCWWGG | 3 cut(s) | 326, 693, 876 |
| FaeI | CATG | 6 cut(s) | 242, 260, 302, 534, 851, 980 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 164, 196 |
| FaqI | GGGAC | 1 cut(s) | 978 |
| FatI | CATG | 6 cut(s) | 238, 256, 298, 530, 847, 976 |
| FauI | CCCGC | 2 cut(s) | 190, 402 |
| FbaI | TGATCA | 2 cut(s) | 69, 973 |
| Fnu4HI | GCNGC | 5 cut(s) | 290, 572, 707, 933, 986 |
| FokI | GGATG | 2 cut(s) | 17, 239 |
| Fsp4HI | GCNGC | 5 cut(s) | 290, 572, 707, 933, 986 |
| FspBI | CTAG | 3 cut(s) | 155, 452, 1113 |
| GlaI | GCGC | 2 cut(s) | 57, 947 |
| GluI | GCNGC | 5 cut(s) | 290, 572, 707, 933, 986 |
| HaeII | RGCGCY | 1 cut(s) | 59 |
| HaeIII | GGCC | 4 cut(s) | 204, 385, 875, 1203 |
| HgaI | GACGC | 1 cut(s) | 716 |
| HhaI | GCGC | 2 cut(s) | 58, 948 |
| Hin1I | GRCGYC | 1 cut(s) | 540 |
| Hin1II | CATG | 6 cut(s) | 242, 260, 302, 534, 851, 980 |
| Hin6I | GCGC | 2 cut(s) | 56, 946 |
| HinP1I | GCGC | 2 cut(s) | 56, 946 |
| HincII | GTYRAC | 1 cut(s) | 1069 |
| HindII | GTYRAC | 1 cut(s) | 1069 |
| HindIII | AAGCTT | 1 cut(s) | 1284 |
| HinfI | GANTC | 6 cut(s) | 30, 79, 281, 317, 493, 698 |
| HphI | GGTGA | 4 cut(s) | 343, 449, 571, 911 |
| Hpy166II | GTNNAC | 3 cut(s) | 168, 799, 1069 |
| Hpy188I | TCNGA | 9 cut(s) | 90, 738, 753, 790, 942, 1083, 1122, 1150, 1248 |
| Hpy188III | TCNNGA | 4 cut(s) | 10, 181, 977, 1061 |
| Hpy8I | GTNNAC | 3 cut(s) | 168, 799, 1069 |
| Hpy99I | CGWCG | 1 cut(s) | 1192 |
| HpyAV | CCTTC | 2 cut(s) | 166, 998 |
| HpyCH4III | ACNGT | 1 cut(s) | 969 |
| HpyCH4IV | ACGT | 1 cut(s) | 540 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 571 |
| HpyF3I | CTNAG | 5 cut(s) | 59, 87, 789, 1087, 1271 |
| HpySE526I | ACGT | 1 cut(s) | 540 |
| Hsp92I | GRCGYC | 1 cut(s) | 540 |
| Hsp92II | CATG | 6 cut(s) | 242, 260, 302, 534, 851, 980 |
| HspAI | GCGC | 2 cut(s) | 56, 946 |
| KpnI | GGTACC | 1 cut(s) | 525 |
| Ksp22I | TGATCA | 2 cut(s) | 69, 973 |
| LmnI | GCTCC | 2 cut(s) | 652, 753 |
| Lsp1109I | GCAGC | 4 cut(s) | 301, 718, 944, 997 |
| LweI | GCATC | 2 cut(s) | 396, 412 |
| MabI | ACCWGGT | 1 cut(s) | 476 |
| MaeI | CTAG | 3 cut(s) | 155, 452, 1113 |
| MaeII | ACGT | 1 cut(s) | 540 |
| MaeIII | GTNAC | 5 cut(s) | 536, 880, 1021, 1108, 1266 |
| MboII | GAAGA | 6 cut(s) | 314, 647, 820, 863, 877, 1163 |
| MflI | RGATCY | 1 cut(s) | 151 |
| MhlI | GDGCHC | 2 cut(s) | 649, 1141 |
| MluCI | AATT | 8 cut(s) | 19, 336, 484, 622, 907, 955, 1074, 1095 |
| MlyI | GAGTC | 1 cut(s) | 487 |
| Mph1103I | ATGCAT | 1 cut(s) | 427 |
| MseI | TTAA | 7 cut(s) | 135, 348, 678, 818, 1047, 1077, 1309 |
| MspA1I | CMGCKG | 2 cut(s) | 988, 1199 |
| MspR9I | CCNGG | 2 cut(s) | 206, 478 |
| MvaI | CCWGG | 2 cut(s) | 206, 478 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 571 |
| NlaIII | CATG | 6 cut(s) | 242, 260, 302, 534, 851, 980 |
| NlaIV | GGNNCC | 1 cut(s) | 523 |
| NmuCI | GTSAC | 2 cut(s) | 536, 1021 |
| NsiI | ATGCAT | 1 cut(s) | 427 |
| PagI | TCATGA | 1 cut(s) | 976 |
| PceI | AGGCCT | 1 cut(s) | 204 |
| PfeI | GAWTC | 5 cut(s) | 30, 79, 281, 317, 698 |
| PflFI | GACNNNGTC | 2 cut(s) | 726, 1157 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 304, 582 |
| PkrI | GCNGC | 5 cut(s) | 291, 573, 708, 934, 987 |
| PleI | GAGTC | 1 cut(s) | 487 |
| PpsI | GAGTC | 1 cut(s) | 487 |
| PshBI | ATTAAT | 1 cut(s) | 1077 |
| Psp6I | CCWGG | 2 cut(s) | 204, 476 |
| PspGI | CCWGG | 2 cut(s) | 204, 476 |
| PspN4I | GGNNCC | 1 cut(s) | 523 |
| PspPI | GGNCC | 3 cut(s) | 383, 873, 1202 |
| PsuI | RGATCY | 1 cut(s) | 151 |
| PsyI | GACNNNGTC | 2 cut(s) | 726, 1157 |
| RsaI | GTAC | 5 cut(s) | 167, 523, 660, 1184, 1280 |
| RsaNI | GTAC | 5 cut(s) | 166, 522, 659, 1183, 1279 |
| SaqAI | TTAA | 7 cut(s) | 135, 348, 678, 818, 1047, 1077, 1309 |
| SatI | GCNGC | 5 cut(s) | 290, 572, 707, 933, 986 |
| Sau96I | GGNCC | 3 cut(s) | 383, 873, 1202 |
| SchI | GAGTC | 1 cut(s) | 487 |
| ScrFI | CCNGG | 2 cut(s) | 206, 478 |
| SduI | GDGCHC | 2 cut(s) | 649, 1141 |
| SexAI | ACCWGGT | 1 cut(s) | 476 |
| SfaNI | GCATC | 2 cut(s) | 396, 412 |
| SmlI | CTYRAG | 2 cut(s) | 10, 181 |
| SmoI | CTYRAG | 2 cut(s) | 10, 181 |
| SpeI | ACTAGT | 1 cut(s) | 1112 |
| Sse9I | AATT | 8 cut(s) | 19, 336, 484, 622, 907, 955, 1074, 1095 |
| SseBI | AGGCCT | 1 cut(s) | 204 |
| SsiI | CCGC | 6 cut(s) | 197, 409, 572, 988, 1091, 1197 |
| SspMI | CTAG | 3 cut(s) | 155, 452, 1113 |
| StuI | AGGCCT | 1 cut(s) | 204 |
| StyD4I | CCNGG | 2 cut(s) | 204, 476 |
| StyI | CCWWGG | 3 cut(s) | 326, 693, 876 |
| TaaI | ACNGT | 1 cut(s) | 969 |
| TaiI | ACGT | 1 cut(s) | 543 |
| TaqI | TCGA | 1 cut(s) | 231 |
| TasI | AATT | 8 cut(s) | 19, 336, 484, 622, 907, 955, 1074, 1095 |
| TatI | WGTACW | 2 cut(s) | 658, 1278 |
| TauI | GCSGC | 1 cut(s) | 574 |
| TfiI | GAWTC | 5 cut(s) | 30, 79, 281, 317, 698 |
| Tru1I | TTAA | 7 cut(s) | 135, 348, 678, 818, 1047, 1077, 1309 |
| Tru9I | TTAA | 7 cut(s) | 135, 348, 678, 818, 1047, 1077, 1309 |
| TscAI | CASTG | 1 cut(s) | 1302 |
| TseFI | GTSAC | 2 cut(s) | 536, 1021 |
| TseI | GCWGC | 4 cut(s) | 289, 706, 932, 985 |
| Tsp45I | GTSAC | 2 cut(s) | 536, 1021 |
| TspDTI | ATGAA | 5 cut(s) | 366, 788, 864, 1017, 1017 |
| TspGWI | ACGGA | 1 cut(s) | 407 |
| TspRI | CASTG | 1 cut(s) | 1302 |
| Tth111I | GACNNNGTC | 2 cut(s) | 726, 1157 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 304, 582 |
| VspI | ATTAAT | 1 cut(s) | 1077 |
| XapI | RAATTY | 2 cut(s) | 484, 907 |
| XspI | CTAG | 3 cut(s) | 155, 452, 1113 |
| ZraI | GACGTC | 1 cut(s) | 541 |
| Zsp2I | ATGCAT | 1 cut(s) | 427 |