ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 524 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 558 |
| AciI | CCGC | 3 cut(s) | 313, 473, 487 |
| AclWI | GGATC | 2 cut(s) | 78, 277 |
| AcsI | RAATTY | 2 cut(s) | 129, 562 |
| AdeI | CACNNNGTG | 1 cut(s) | 558 |
| AfaI | GTAC | 2 cut(s) | 512, 601 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 487, 558 |
| AgsI | TTSAA | 4 cut(s) | 67, 134, 143, 567 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 87, 119 |
| AluBI | AGCT | 2 cut(s) | 21, 593 |
| AluI | AGCT | 2 cut(s) | 21, 593 |
| Alw26I | GTCTC | 1 cut(s) | 372 |
| AlwI | GGATC | 2 cut(s) | 78, 277 |
| AoxI | GGCC | 1 cut(s) | 461 |
| ApoI | RAATTY | 2 cut(s) | 129, 562 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 182 |
| AspA2I | CCTAGG | 2 cut(s) | 160, 529 |
| AspS9I | GGNCC | 2 cut(s) | 461, 526 |
| AsuC2I | CCSGG | 1 cut(s) | 287 |
| AsuII | TTCGAA | 1 cut(s) | 250 |
| AvaII | GGWCC | 1 cut(s) | 526 |
| AvrII | CCTAGG | 2 cut(s) | 160, 529 |
| BaeGI | GKGCMC | 1 cut(s) | 160 |
| BccI | CCATC | 1 cut(s) | 581 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 356, 390 |
| BcnI | CCSGG | 1 cut(s) | 287 |
| BcoDI | GTCTC | 1 cut(s) | 372 |
| BfaI | CTAG | 4 cut(s) | 57, 161, 306, 530 |
| BglII | AGATCT | 1 cut(s) | 145 |
| BlnI | CCTAGG | 2 cut(s) | 160, 529 |
| Bme1390I | CCNGG | 1 cut(s) | 287 |
| Bme18I | GGWCC | 1 cut(s) | 526 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 526 |
| BmrFI | CCNGG | 1 cut(s) | 287 |
| BmrI | ACTGGG | 1 cut(s) | 330 |
| BmsI | GCATC | 3 cut(s) | 160, 265, 490 |
| BmuI | ACTGGG | 1 cut(s) | 330 |
| Bpu14I | TTCGAA | 1 cut(s) | 250 |
| BpuEI | CTTGAG | 3 cut(s) | 208, 322, 403 |
| BpuMI | CCSGG | 1 cut(s) | 287 |
| BsaBI | GATNNNNATC | 2 cut(s) | 150, 437 |
| BsaJI | CCNNGG | 5 cut(s) | 160, 286, 404, 529, 538 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 487, 558 |
| Bse118I | RCCGGY | 1 cut(s) | 604 |
| Bse1I | ACTGG | 2 cut(s) | 325, 464 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 2 cut(s) | 150, 437 |
| BseDI | CCNNGG | 5 cut(s) | 160, 286, 404, 529, 538 |
| BseGI | GGATG | 1 cut(s) | 592 |
| BseJI | GATNNNNATC | 2 cut(s) | 150, 437 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 487, 558 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseMII | CTCAG | 1 cut(s) | 270 |
| BseNI | ACTGG | 2 cut(s) | 325, 464 |
| BseSI | GKGCMC | 1 cut(s) | 160 |
| BseYI | CCCAGC | 1 cut(s) | 203 |
| BshFI | GGCC | 1 cut(s) | 463 |
| BsiSI | CCGG | 2 cut(s) | 286, 605 |
| BslFI | GGGAC | 2 cut(s) | 222, 530 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 487, 558 |
| BsmAI | GTCTC | 1 cut(s) | 372 |
| BsmFI | GGGAC | 2 cut(s) | 222, 530 |
| BsnI | GGCC | 1 cut(s) | 463 |
| Bsp119I | TTCGAA | 1 cut(s) | 250 |
| Bsp1286I | GDGCHC | 1 cut(s) | 160 |
| Bsp143I | GATC | 7 cut(s) | 70, 145, 238, 282, 355, 388, 453 |
| BspACI | CCGC | 3 cut(s) | 313, 473, 487 |
| BspANI | GGCC | 1 cut(s) | 463 |
| BspCNI | CTCAG | 1 cut(s) | 271 |
| BspPI | GGATC | 2 cut(s) | 78, 277 |
| BspT104I | TTCGAA | 1 cut(s) | 250 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrFI | RCCGGY | 1 cut(s) | 604 |
| BsrI | ACTGG | 2 cut(s) | 325, 464 |
| BssAI | RCCGGY | 1 cut(s) | 604 |
| BssECI | CCNNGG | 5 cut(s) | 160, 286, 404, 529, 538 |
| BssMI | GATC | 7 cut(s) | 70, 145, 238, 282, 355, 388, 453 |
| BssT1I | CCWWGG | 4 cut(s) | 160, 404, 529, 538 |
| BstBI | TTCGAA | 1 cut(s) | 250 |
| BstC8I | GCNNGC | 1 cut(s) | 606 |
| BstDEI | CTNAG | 2 cut(s) | 17, 279 |
| BstF5I | GGATG | 1 cut(s) | 592 |
| BstKTI | GATC | 7 cut(s) | 73, 148, 241, 285, 358, 391, 456 |
| BstMAI | GTCTC | 1 cut(s) | 372 |
| BstMBI | GATC | 7 cut(s) | 70, 145, 238, 282, 355, 388, 453 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 27 |
| BstSCI | CCNGG | 1 cut(s) | 285 |
| BstSLI | GKGCMC | 1 cut(s) | 160 |
| BstX2I | RGATCY | 3 cut(s) | 70, 145, 282 |
| BstYI | RGATCY | 3 cut(s) | 70, 145, 282 |
| BsuRI | GGCC | 1 cut(s) | 463 |
| BtgZI | GCGATG | 1 cut(s) | 61 |
| BtsCI | GGATG | 1 cut(s) | 592 |
| BtsIMutI | CAGTG | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 1 cut(s) | 606 |
| Cfr10I | RCCGGY | 1 cut(s) | 604 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 526 |
| Csp6I | GTAC | 2 cut(s) | 511, 600 |
| CviAII | CATG | 4 cut(s) | 173, 245, 363, 555 |
| CviJI | RGCY | 6 cut(s) | 21, 91, 203, 333, 463, 593 |
| CviKI_1 | RGCY | 6 cut(s) | 21, 91, 203, 333, 463, 593 |
| CviQI | GTAC | 2 cut(s) | 511, 600 |
| DdeI | CTNAG | 2 cut(s) | 17, 279 |
| DpnI | GATC | 7 cut(s) | 72, 147, 240, 284, 357, 390, 455 |
| DpnII | GATC | 7 cut(s) | 70, 145, 238, 282, 355, 388, 453 |
| DraIII | CACNNNGTG | 1 cut(s) | 558 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 524 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 524 |
| EciI | GGCGGA | 1 cut(s) | 488 |
| Eco130I | CCWWGG | 4 cut(s) | 160, 404, 529, 538 |
| Eco47I | GGWCC | 1 cut(s) | 526 |
| EcoRI | GAATTC | 2 cut(s) | 129, 562 |
| EcoT14I | CCWWGG | 4 cut(s) | 160, 404, 529, 538 |
| ErhI | CCWWGG | 4 cut(s) | 160, 404, 529, 538 |
| FaeI | CATG | 4 cut(s) | 176, 248, 366, 558 |
| FaiI | YATR | 7 cut(s) | 8, 174, 246, 270, 330, 364, 556 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 170, 202 |
| FaqI | GGGAC | 2 cut(s) | 222, 530 |
| FatI | CATG | 4 cut(s) | 172, 244, 362, 554 |
| FauI | CCCGC | 1 cut(s) | 480 |
| FokI | GGATG | 1 cut(s) | 599 |
| FspBI | CTAG | 4 cut(s) | 57, 161, 306, 530 |
| GsaI | CCCAGC | 1 cut(s) | 207 |
| HaeIII | GGCC | 1 cut(s) | 463 |
| HapII | CCGG | 2 cut(s) | 286, 605 |
| Hin1II | CATG | 4 cut(s) | 176, 248, 366, 558 |
| HincII | GTYRAC | 1 cut(s) | 318 |
| HindII | GTYRAC | 1 cut(s) | 318 |
| HinfI | GANTC | 2 cut(s) | 395, 492 |
| HpaI | GTTAAC | 1 cut(s) | 318 |
| HpaII | CCGG | 2 cut(s) | 286, 605 |
| Hpy166II | GTNNAC | 3 cut(s) | 302, 318, 600 |
| Hpy188I | TCNGA | 1 cut(s) | 114 |
| Hpy188III | TCNNGA | 7 cut(s) | 134, 143, 187, 223, 339, 377, 392 |
| Hpy8I | GTNNAC | 3 cut(s) | 302, 318, 600 |
| HpyAV | CCTTC | 2 cut(s) | 61, 172 |
| HpyCH4V | TGCA | 3 cut(s) | 30, 42, 151 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 27 |
| HpyF3I | CTNAG | 2 cut(s) | 17, 279 |
| Hsp92II | CATG | 4 cut(s) | 176, 248, 366, 558 |
| KroI | GCCGGC | 1 cut(s) | 604 |
| KroNI | GCCGGC | 1 cut(s) | 606 |
| KspAI | GTTAAC | 1 cut(s) | 318 |
| Kzo9I | GATC | 7 cut(s) | 70, 145, 238, 282, 355, 388, 453 |
| LmnI | GCTCC | 1 cut(s) | 590 |
| LweI | GCATC | 3 cut(s) | 160, 265, 490 |
| MaeI | CTAG | 4 cut(s) | 57, 161, 306, 530 |
| MaeIII | GTNAC | 1 cut(s) | 399 |
| MalI | GATC | 7 cut(s) | 72, 147, 240, 284, 357, 390, 455 |
| MboI | GATC | 7 cut(s) | 70, 145, 238, 282, 355, 388, 453 |
| MboII | GAAGA | 3 cut(s) | 161, 233, 463 |
| MfeI | CAATTG | 1 cut(s) | 575 |
| MflI | RGATCY | 3 cut(s) | 70, 145, 282 |
| MhlI | GDGCHC | 1 cut(s) | 160 |
| MluCI | AATT | 5 cut(s) | 25, 96, 129, 562, 575 |
| MlyI | GAGTC | 1 cut(s) | 389 |
| MmeI | TCCRAC | 1 cut(s) | 564 |
| MnlI | CCTC | 2 cut(s) | 26, 187 |
| MreI | CGCCGGCG | 1 cut(s) | 604 |
| MroNI | GCCGGC | 1 cut(s) | 604 |
| MroXI | GAANNNNTTC | 1 cut(s) | 182 |
| MseI | TTAA | 2 cut(s) | 317, 426 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspI | CCGG | 2 cut(s) | 286, 605 |
| MspR9I | CCNGG | 1 cut(s) | 287 |
| MunI | CAATTG | 1 cut(s) | 575 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 27 |
| NaeI | GCCGGC | 1 cut(s) | 606 |
| NciI | CCSGG | 1 cut(s) | 287 |
| NdeII | GATC | 7 cut(s) | 70, 145, 238, 282, 355, 388, 453 |
| NgoMIV | GCCGGC | 1 cut(s) | 604 |
| NlaIII | CATG | 4 cut(s) | 176, 248, 366, 558 |
| NspV | TTCGAA | 1 cut(s) | 250 |
| PdiI | GCCGGC | 1 cut(s) | 606 |
| PdmI | GAANNNNTTC | 1 cut(s) | 182 |
| PfeI | GAWTC | 1 cut(s) | 492 |
| PflFI | GACNNNGTC | 1 cut(s) | 233 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 558 |
| PleI | GAGTC | 1 cut(s) | 389 |
| PpsI | GAGTC | 1 cut(s) | 389 |
| PspFI | CCCAGC | 1 cut(s) | 203 |
| PspPI | GGNCC | 2 cut(s) | 461, 526 |
| PsuI | RGATCY | 3 cut(s) | 70, 145, 282 |
| PsyI | GACNNNGTC | 1 cut(s) | 233 |
| RsaI | GTAC | 2 cut(s) | 512, 601 |
| RsaNI | GTAC | 2 cut(s) | 511, 600 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SaqAI | TTAA | 2 cut(s) | 317, 426 |
| Sau3AI | GATC | 7 cut(s) | 70, 145, 238, 282, 355, 388, 453 |
| Sau96I | GGNCC | 2 cut(s) | 461, 526 |
| SchI | GAGTC | 1 cut(s) | 389 |
| ScrFI | CCNGG | 1 cut(s) | 287 |
| SduI | GDGCHC | 1 cut(s) | 160 |
| SetI | ASST | 6 cut(s) | 23, 237, 307, 406, 535, 595 |
| SfaNI | GCATC | 3 cut(s) | 160, 265, 490 |
| SfuI | TTCGAA | 1 cut(s) | 250 |
| SgrAI | CRCCGGYG | 1 cut(s) | 604 |
| SinI | GGWCC | 1 cut(s) | 526 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 3 cut(s) | 187, 337, 382 |
| SmoI | CTYRAG | 3 cut(s) | 187, 337, 382 |
| Sse9I | AATT | 5 cut(s) | 25, 96, 129, 562, 575 |
| SsiI | CCGC | 3 cut(s) | 313, 473, 487 |
| SspMI | CTAG | 4 cut(s) | 57, 161, 306, 530 |
| StyD4I | CCNGG | 1 cut(s) | 285 |
| StyI | CCWWGG | 4 cut(s) | 160, 404, 529, 538 |
| TaqI | TCGA | 4 cut(s) | 237, 250, 296, 376 |
| TasI | AATT | 5 cut(s) | 25, 96, 129, 562, 575 |
| TfiI | GAWTC | 1 cut(s) | 492 |
| Tru1I | TTAA | 2 cut(s) | 317, 426 |
| Tru9I | TTAA | 2 cut(s) | 317, 426 |
| TscAI | CASTG | 1 cut(s) | 352 |
| TspDTI | ATGAA | 3 cut(s) | 161, 233, 351 |
| TspRI | CASTG | 1 cut(s) | 352 |
| Tth111I | GACNNNGTC | 1 cut(s) | 233 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 558 |
| VpaK11BI | GGWCC | 1 cut(s) | 526 |
| XapI | RAATTY | 2 cut(s) | 129, 562 |
| XmaJI | CCTAGG | 2 cut(s) | 160, 529 |
| XmnI | GAANNNNTTC | 1 cut(s) | 182 |
| XspI | CTAG | 4 cut(s) | 57, 161, 306, 530 |