ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SPOC_AIPP2 | PF23121 | 121 - 252 | 2.9e-41 | AIPP2, SPOC-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 665 |
| AccBSI | CCGCTC | 1 cut(s) | 226 |
| AccII | CGCG | 1 cut(s) | 342 |
| AciI | CCGC | 2 cut(s) | 224, 808 |
| AclWI | GGATC | 3 cut(s) | 373, 707, 720 |
| AcoI | YGGCCR | 1 cut(s) | 34 |
| AcsI | RAATTY | 1 cut(s) | 296 |
| AcuI | CTGAAG | 1 cut(s) | 123 |
| AcyI | GRCGYC | 1 cut(s) | 672 |
| AfaI | GTAC | 3 cut(s) | 496, 611, 624 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 388, 823 |
| AgsI | TTSAA | 2 cut(s) | 117, 727 |
| AjnI | CCWGG | 3 cut(s) | 238, 433, 580 |
| AluBI | AGCT | 4 cut(s) | 167, 251, 455, 769 |
| AluI | AGCT | 4 cut(s) | 167, 251, 455, 769 |
| Alw26I | GTCTC | 1 cut(s) | 629 |
| AlwI | GGATC | 3 cut(s) | 373, 707, 720 |
| AoxI | GGCC | 1 cut(s) | 34 |
| ApeKI | GCWGC | 3 cut(s) | 487, 703, 832 |
| ApoI | RAATTY | 1 cut(s) | 296 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 13, 263, 531, 737 |
| AspLEI | GCGC | 1 cut(s) | 344 |
| AspS9I | GGNCC | 1 cut(s) | 597 |
| AsuHPI | GGTGA | 1 cut(s) | 73 |
| AvaII | GGWCC | 1 cut(s) | 597 |
| BamHI | GGATCC | 1 cut(s) | 712 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 56, 88 |
| BbvI | GCAGC | 3 cut(s) | 474, 690, 819 |
| BccI | CCATC | 1 cut(s) | 407 |
| BceAI | ACGGC | 1 cut(s) | 21 |
| BciT130I | CCWGG | 3 cut(s) | 240, 435, 582 |
| BcoDI | GTCTC | 1 cut(s) | 629 |
| BfaI | CTAG | 2 cut(s) | 6, 458 |
| BglII | AGATCT | 1 cut(s) | 643 |
| BisI | GCNGC | 3 cut(s) | 488, 704, 833 |
| BlsI | GCNGC | 3 cut(s) | 489, 705, 834 |
| BmcAI | AGTACT | 1 cut(s) | 611 |
| Bme1390I | CCNGG | 3 cut(s) | 240, 435, 582 |
| Bme18I | GGWCC | 1 cut(s) | 597 |
| BmgT120I | GGNCC | 1 cut(s) | 597 |
| BmiI | GGNNCC | 1 cut(s) | 714 |
| BmrFI | CCNGG | 3 cut(s) | 240, 435, 582 |
| BmsI | GCATC | 6 cut(s) | 208, 343, 465, 715, 810, 819 |
| BpmI | CTGGAG | 1 cut(s) | 749 |
| BpuEI | CTTGAG | 1 cut(s) | 395 |
| BsaHI | GRCGYC | 1 cut(s) | 672 |
| BsaJI | CCNNGG | 1 cut(s) | 580 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 797, 827 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 388, 823 |
| Bse1I | ACTGG | 1 cut(s) | 94 |
| Bse3DI | GCAATG | 2 cut(s) | 285, 520 |
| BseBI | CCWGG | 3 cut(s) | 240, 435, 582 |
| BseDI | CCNNGG | 1 cut(s) | 580 |
| BseGI | GGATG | 2 cut(s) | 223, 834 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 388, 823 |
| BseMI | GCAATG | 2 cut(s) | 285, 520 |
| BseMII | CTCAG | 2 cut(s) | 114, 644 |
| BseNI | ACTGG | 1 cut(s) | 94 |
| BseRI | GAGGAG | 1 cut(s) | 670 |
| BseXI | GCAGC | 3 cut(s) | 474, 690, 819 |
| Bsh1236I | CGCG | 1 cut(s) | 342 |
| BshFI | GGCC | 1 cut(s) | 36 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 388, 823 |
| BsmAI | GTCTC | 1 cut(s) | 629 |
| BsmI | GAATGC | 1 cut(s) | 13 |
| BsnI | GGCC | 1 cut(s) | 36 |
| Bsp1407I | TGTACA | 1 cut(s) | 622 |
| Bsp143I | GATC | 3 cut(s) | 378, 643, 712 |
| BspACI | CCGC | 2 cut(s) | 224, 808 |
| BspANI | GGCC | 1 cut(s) | 36 |
| BspCNI | CTCAG | 2 cut(s) | 115, 645 |
| BspFNI | CGCG | 1 cut(s) | 342 |
| BspLI | GGNNCC | 1 cut(s) | 714 |
| BspPI | GGATC | 3 cut(s) | 373, 707, 720 |
| BsrBI | CCGCTC | 1 cut(s) | 226 |
| BsrDI | GCAATG | 2 cut(s) | 285, 520 |
| BsrGI | TGTACA | 1 cut(s) | 622 |
| BsrI | ACTGG | 1 cut(s) | 94 |
| BssECI | CCNNGG | 1 cut(s) | 580 |
| BssMI | GATC | 3 cut(s) | 378, 643, 712 |
| BssNI | GRCGYC | 1 cut(s) | 672 |
| Bst2UI | CCWGG | 3 cut(s) | 240, 435, 582 |
| Bst6I | CTCTTC | 1 cut(s) | 697 |
| BstACI | GRCGYC | 1 cut(s) | 672 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 829 |
| BstAUI | TGTACA | 1 cut(s) | 622 |
| BstDEI | CTNAG | 3 cut(s) | 123, 653, 696 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 386, 821 |
| BstF5I | GGATG | 2 cut(s) | 223, 834 |
| BstFNI | CGCG | 1 cut(s) | 342 |
| BstHHI | GCGC | 1 cut(s) | 344 |
| BstKTI | GATC | 3 cut(s) | 381, 646, 715 |
| BstMAI | GTCTC | 1 cut(s) | 629 |
| BstMBI | GATC | 3 cut(s) | 378, 643, 712 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 484, 829 |
| BstNI | CCWGG | 3 cut(s) | 240, 435, 582 |
| BstSCI | CCNGG | 3 cut(s) | 238, 433, 580 |
| BstUI | CGCG | 1 cut(s) | 342 |
| BstV1I | GCAGC | 3 cut(s) | 474, 690, 819 |
| BstX2I | RGATCY | 3 cut(s) | 378, 643, 712 |
| BstYI | RGATCY | 3 cut(s) | 378, 643, 712 |
| BsuRI | GGCC | 1 cut(s) | 36 |
| BtsCI | GGATG | 2 cut(s) | 223, 834 |
| BtsIMutI | CAGTG | 2 cut(s) | 99, 120 |
| CfoI | GCGC | 1 cut(s) | 344 |
| Cfr13I | GGNCC | 1 cut(s) | 597 |
| CseI | GACGC | 1 cut(s) | 661 |
| Csp6I | GTAC | 3 cut(s) | 495, 610, 623 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 833 |
| CviAII | CATG | 3 cut(s) | 32, 95, 847 |
| CviQI | GTAC | 3 cut(s) | 495, 610, 623 |
| DdeI | CTNAG | 3 cut(s) | 123, 653, 696 |
| DpnI | GATC | 3 cut(s) | 380, 645, 714 |
| DpnII | GATC | 3 cut(s) | 378, 643, 712 |
| DraI | TTTAAA | 1 cut(s) | 28 |
| EaeI | YGGCCR | 1 cut(s) | 34 |
| Eam1104I | CTCTTC | 1 cut(s) | 697 |
| EarI | CTCTTC | 1 cut(s) | 697 |
| Eco47I | GGWCC | 1 cut(s) | 597 |
| Eco57I | CTGAAG | 1 cut(s) | 123 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 386, 821 |
| EcoRII | CCWGG | 3 cut(s) | 238, 433, 580 |
| FaeI | CATG | 3 cut(s) | 35, 98, 850 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 251, 283 |
| FatI | CATG | 3 cut(s) | 31, 94, 846 |
| Fnu4HI | GCNGC | 3 cut(s) | 488, 704, 833 |
| FokI | GGATG | 2 cut(s) | 230, 841 |
| Fsp4HI | GCNGC | 3 cut(s) | 488, 704, 833 |
| FspBI | CTAG | 2 cut(s) | 6, 458 |
| GlaI | GCGC | 1 cut(s) | 343 |
| GluI | GCNGC | 3 cut(s) | 488, 704, 833 |
| GsuI | CTGGAG | 1 cut(s) | 749 |
| HaeIII | GGCC | 1 cut(s) | 36 |
| HgaI | GACGC | 1 cut(s) | 661 |
| HhaI | GCGC | 1 cut(s) | 344 |
| Hin1I | GRCGYC | 1 cut(s) | 672 |
| Hin1II | CATG | 3 cut(s) | 35, 98, 850 |
| Hin6I | GCGC | 1 cut(s) | 342 |
| HinP1I | GCGC | 1 cut(s) | 342 |
| HindIII | AAGCTT | 1 cut(s) | 249 |
| HinfI | GANTC | 6 cut(s) | 134, 187, 209, 392, 658, 779 |
| HphI | GGTGA | 1 cut(s) | 73 |
| Hpy166II | GTNNAC | 1 cut(s) | 83 |
| Hpy188I | TCNGA | 4 cut(s) | 258, 295, 537, 648 |
| Hpy188III | TCNNGA | 4 cut(s) | 6, 458, 710, 720 |
| Hpy8I | GTNNAC | 1 cut(s) | 83 |
| HpyAV | CCTTC | 4 cut(s) | 3, 58, 726, 793 |
| HpyCH4V | TGCA | 5 cut(s) | 201, 513, 566, 706, 823 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 484, 829 |
| HpyF3I | CTNAG | 3 cut(s) | 123, 653, 696 |
| Hsp92I | GRCGYC | 1 cut(s) | 672 |
| Hsp92II | CATG | 3 cut(s) | 35, 98, 850 |
| HspAI | GCGC | 1 cut(s) | 342 |
| Kzo9I | GATC | 3 cut(s) | 378, 643, 712 |
| LmnI | GCTCC | 1 cut(s) | 226 |
| Lsp1109I | GCAGC | 3 cut(s) | 474, 690, 819 |
| LweI | GCATC | 6 cut(s) | 208, 343, 465, 715, 810, 819 |
| MaeI | CTAG | 2 cut(s) | 6, 458 |
| MaeIII | GTNAC | 2 cut(s) | 67, 210 |
| MalI | GATC | 3 cut(s) | 380, 645, 714 |
| MbiI | CCGCTC | 1 cut(s) | 226 |
| MboI | GATC | 3 cut(s) | 378, 643, 712 |
| MboII | GAAGA | 4 cut(s) | 116, 422, 536, 684 |
| MflI | RGATCY | 3 cut(s) | 378, 643, 712 |
| MluCI | AATT | 5 cut(s) | 112, 296, 336, 404, 586 |
| MlyI | GAGTC | 4 cut(s) | 143, 218, 667, 773 |
| MmeI | TCCRAC | 1 cut(s) | 42 |
| MnlI | CCTC | 7 cut(s) | 301, 550, 588, 648, 693, 771, 821 |
| MroXI | GAANNNNTTC | 4 cut(s) | 13, 263, 531, 737 |
| MseI | TTAA | 1 cut(s) | 27 |
| MspR9I | CCNGG | 3 cut(s) | 240, 435, 582 |
| MssI | GTTTAAAC | 1 cut(s) | 28 |
| Mva1269I | GAATGC | 1 cut(s) | 13 |
| MvaI | CCWGG | 3 cut(s) | 240, 435, 582 |
| MvnI | CGCG | 1 cut(s) | 342 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 484, 829 |
| NdeII | GATC | 3 cut(s) | 378, 643, 712 |
| NlaIII | CATG | 3 cut(s) | 35, 98, 850 |
| NlaIV | GGNNCC | 1 cut(s) | 714 |
| NmuCI | GTSAC | 1 cut(s) | 210 |
| PctI | GAATGC | 1 cut(s) | 13 |
| PdmI | GAANNNNTTC | 4 cut(s) | 13, 263, 531, 737 |
| PfeI | GAWTC | 2 cut(s) | 187, 392 |
| PfoI | TCCNGGA | 1 cut(s) | 433 |
| PkrI | GCNGC | 3 cut(s) | 489, 705, 834 |
| PleI | GAGTC | 4 cut(s) | 142, 217, 666, 773 |
| PmeI | GTTTAAAC | 1 cut(s) | 28 |
| PpsI | GAGTC | 4 cut(s) | 142, 217, 666, 773 |
| PsiI | TTATAA | 1 cut(s) | 665 |
| Psp6I | CCWGG | 3 cut(s) | 238, 433, 580 |
| PspGI | CCWGG | 3 cut(s) | 238, 433, 580 |
| PspN4I | GGNNCC | 1 cut(s) | 714 |
| PspPI | GGNCC | 1 cut(s) | 597 |
| PsuI | RGATCY | 3 cut(s) | 378, 643, 712 |
| RsaI | GTAC | 3 cut(s) | 496, 611, 624 |
| RsaNI | GTAC | 3 cut(s) | 495, 610, 623 |
| SaqAI | TTAA | 1 cut(s) | 27 |
| SatI | GCNGC | 3 cut(s) | 488, 704, 833 |
| Sau3AI | GATC | 3 cut(s) | 378, 643, 712 |
| Sau96I | GGNCC | 1 cut(s) | 597 |
| ScaI | AGTACT | 1 cut(s) | 611 |
| SchI | GAGTC | 4 cut(s) | 143, 218, 667, 773 |
| ScrFI | CCNGG | 3 cut(s) | 240, 435, 582 |
| SetI | ASST | 9 cut(s) | 63, 69, 88, 169, 253, 400, 457, 599, 771 |
| SfaNI | GCATC | 6 cut(s) | 208, 343, 465, 715, 810, 819 |
| SinI | GGWCC | 1 cut(s) | 597 |
| SmlI | CTYRAG | 1 cut(s) | 374 |
| SmoI | CTYRAG | 1 cut(s) | 374 |
| Sse9I | AATT | 5 cut(s) | 112, 296, 336, 404, 586 |
| SsiI | CCGC | 2 cut(s) | 224, 808 |
| SspI | AATATT | 1 cut(s) | 531 |
| SspMI | CTAG | 2 cut(s) | 6, 458 |
| StyD4I | CCNGG | 3 cut(s) | 238, 433, 580 |
| TaqI | TCGA | 1 cut(s) | 177 |
| TasI | AATT | 5 cut(s) | 112, 296, 336, 404, 586 |
| TatI | WGTACW | 3 cut(s) | 494, 609, 622 |
| TfiI | GAWTC | 2 cut(s) | 187, 392 |
| Tru1I | TTAA | 1 cut(s) | 27 |
| Tru9I | TTAA | 1 cut(s) | 27 |
| TscAI | CASTG | 2 cut(s) | 106, 127 |
| TseFI | GTSAC | 1 cut(s) | 210 |
| TseI | GCWGC | 3 cut(s) | 487, 703, 832 |
| Tsp45I | GTSAC | 1 cut(s) | 210 |
| TspDTI | ATGAA | 2 cut(s) | 746, 812 |
| TspRI | CASTG | 2 cut(s) | 106, 127 |
| VpaK11BI | GGWCC | 1 cut(s) | 597 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 386, 821 |
| XapI | RAATTY | 1 cut(s) | 296 |
| XbaI | TCTAGA | 2 cut(s) | 5, 457 |
| XmnI | GAANNNNTTC | 4 cut(s) | 13, 263, 531, 737 |
| XspI | CTAG | 2 cut(s) | 6, 458 |
| ZrmI | AGTACT | 1 cut(s) | 611 |