ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 659 |
| AccII | CGCG | 1 cut(s) | 390 |
| AciI | CCGC | 2 cut(s) | 388, 787 |
| AclWI | GGATC | 2 cut(s) | 275, 496 |
| AcsI | RAATTY | 1 cut(s) | 669 |
| AfaI | GTAC | 3 cut(s) | 395, 700, 735 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 631, 632, 644 |
| AgsI | TTSAA | 4 cut(s) | 92, 139, 337, 772 |
| AjnI | CCWGG | 7 cut(s) | 186, 546, 558, 576, 606, 618, 630 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 656, 688 |
| AleI | CACNNNNGTG | 1 cut(s) | 323 |
| AluBI | AGCT | 7 cut(s) | 38, 449, 485, 587, 742, 751, 763 |
| AluI | AGCT | 7 cut(s) | 38, 449, 485, 587, 742, 751, 763 |
| AlwI | GGATC | 2 cut(s) | 275, 496 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 742 |
| AoxI | GGCC | 5 cut(s) | 527, 592, 622, 634, 703 |
| ApaI | GGGCCC | 3 cut(s) | 596, 626, 638 |
| ApeKI | GCWGC | 6 cut(s) | 29, 285, 542, 572, 602, 742 |
| ApoI | RAATTY | 1 cut(s) | 669 |
| AspS9I | GGNCC | 8 cut(s) | 190, 592, 593, 622, 623, 634, 635, 704 |
| AsuC2I | CCSGG | 1 cut(s) | 526 |
| AsuNHI | GCTAGC | 1 cut(s) | 445 |
| AvaII | GGWCC | 1 cut(s) | 190 |
| BaeGI | GKGCMC | 4 cut(s) | 596, 626, 638, 662 |
| BanI | GGYRCC | 1 cut(s) | 659 |
| BanII | GRGCYC | 4 cut(s) | 566, 596, 626, 638 |
| BbsI | GAAGAC | 1 cut(s) | 760 |
| BbvI | GCAGC | 6 cut(s) | 16, 272, 554, 584, 614, 729 |
| BccI | CCATC | 2 cut(s) | 107, 203 |
| BciT130I | CCWGG | 7 cut(s) | 188, 548, 560, 578, 608, 620, 632 |
| BcnI | CCSGG | 1 cut(s) | 526 |
| BfaI | CTAG | 2 cut(s) | 194, 446 |
| BisI | GCNGC | 8 cut(s) | 30, 286, 388, 543, 573, 603, 743, 788 |
| BlpI | GCTNAGC | 1 cut(s) | 486 |
| BlsI | GCNGC | 8 cut(s) | 31, 287, 389, 544, 574, 604, 744, 789 |
| Bme1390I | CCNGG | 8 cut(s) | 188, 526, 548, 560, 578, 608, 620, 632 |
| Bme18I | GGWCC | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 8 cut(s) | 190, 592, 593, 622, 623, 634, 635, 704 |
| BmiI | GGNNCC | 4 cut(s) | 594, 624, 636, 661 |
| BmrFI | CCNGG | 8 cut(s) | 188, 526, 548, 560, 578, 608, 620, 632 |
| BmsI | GCATC | 3 cut(s) | 16, 46, 693 |
| BmtI | GCTAGC | 1 cut(s) | 449 |
| BpiI | GAAGAC | 1 cut(s) | 760 |
| Bpu10I | CCTNAGC | 1 cut(s) | 588 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 486 |
| BpuEI | CTTGAG | 1 cut(s) | 550 |
| BpuMI | CCSGG | 1 cut(s) | 526 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 691, 721 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 631, 632, 644 |
| Bse118I | RCCGGY | 1 cut(s) | 701 |
| Bse1I | ACTGG | 1 cut(s) | 788 |
| Bse3DI | GCAATG | 1 cut(s) | 280 |
| BseBI | CCWGG | 7 cut(s) | 188, 548, 560, 578, 608, 620, 632 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 631, 632, 644 |
| BseMI | GCAATG | 1 cut(s) | 280 |
| BseMII | CTCAG | 3 cut(s) | 500, 602, 709 |
| BseNI | ACTGG | 1 cut(s) | 788 |
| BseSI | GKGCMC | 4 cut(s) | 596, 626, 638, 662 |
| BseXI | GCAGC | 6 cut(s) | 16, 272, 554, 584, 614, 729 |
| BseYI | CCCAGC | 1 cut(s) | 260 |
| Bsh1236I | CGCG | 1 cut(s) | 390 |
| BshFI | GGCC | 5 cut(s) | 529, 594, 624, 636, 705 |
| BshNI | GGYRCC | 1 cut(s) | 659 |
| BsiSI | CCGG | 2 cut(s) | 526, 702 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 631, 632, 644 |
| BsnI | GGCC | 5 cut(s) | 529, 594, 624, 636, 705 |
| Bsp120I | GGGCCC | 3 cut(s) | 592, 622, 634 |
| Bsp1286I | GDGCHC | 5 cut(s) | 566, 596, 626, 638, 662 |
| Bsp143I | GATC | 3 cut(s) | 267, 361, 501 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 486 |
| Bsp19I | CCATGG | 1 cut(s) | 126 |
| BspACI | CCGC | 2 cut(s) | 388, 787 |
| BspANI | GGCC | 5 cut(s) | 529, 594, 624, 636, 705 |
| BspCNI | CTCAG | 3 cut(s) | 499, 601, 708 |
| BspFNI | CGCG | 1 cut(s) | 390 |
| BspLI | GGNNCC | 4 cut(s) | 594, 624, 636, 661 |
| BspOI | GCTAGC | 1 cut(s) | 449 |
| BspPI | GGATC | 2 cut(s) | 275, 496 |
| BspT107I | GGYRCC | 1 cut(s) | 659 |
| BsrDI | GCAATG | 1 cut(s) | 280 |
| BsrFI | RCCGGY | 1 cut(s) | 701 |
| BsrI | ACTGG | 1 cut(s) | 788 |
| BssAI | RCCGGY | 1 cut(s) | 701 |
| BssMI | GATC | 3 cut(s) | 267, 361, 501 |
| BssT1I | CCWWGG | 4 cut(s) | 126, 536, 596, 638 |
| Bst2UI | CCWGG | 7 cut(s) | 188, 548, 560, 578, 608, 620, 632 |
| Bst4CI | ACNGT | 2 cut(s) | 179, 251 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 375 |
| BstC8I | GCNNGC | 2 cut(s) | 447, 483 |
| BstDEI | CTNAG | 4 cut(s) | 486, 506, 588, 695 |
| BstDSI | CCRYGG | 1 cut(s) | 126 |
| BstFNI | CGCG | 1 cut(s) | 390 |
| BstKTI | GATC | 3 cut(s) | 270, 364, 504 |
| BstMBI | GATC | 3 cut(s) | 267, 361, 501 |
| BstNI | CCWGG | 7 cut(s) | 188, 548, 560, 578, 608, 620, 632 |
| BstSCI | CCNGG | 8 cut(s) | 186, 524, 546, 558, 576, 606, 618, 630 |
| BstSLI | GKGCMC | 4 cut(s) | 596, 626, 638, 662 |
| BstUI | CGCG | 1 cut(s) | 390 |
| BstV1I | GCAGC | 6 cut(s) | 16, 272, 554, 584, 614, 729 |
| BstV2I | GAAGAC | 1 cut(s) | 760 |
| BsuRI | GGCC | 5 cut(s) | 529, 594, 624, 636, 705 |
| BtgI | CCRYGG | 1 cut(s) | 126 |
| BtsI | GCAGTG | 1 cut(s) | 415 |
| BtsIMutI | CAGTG | 1 cut(s) | 415 |
| Cac8I | GCNNGC | 2 cut(s) | 447, 483 |
| CaiI | CAGNNNCTG | 1 cut(s) | 742 |
| Cfr10I | RCCGGY | 1 cut(s) | 701 |
| Cfr13I | GGNCC | 8 cut(s) | 190, 592, 593, 622, 623, 634, 635, 704 |
| Csp6I | GTAC | 3 cut(s) | 394, 699, 734 |
| CviAII | CATG | 3 cut(s) | 71, 127, 680 |
| CviQI | GTAC | 3 cut(s) | 394, 699, 734 |
| DdeI | CTNAG | 4 cut(s) | 486, 506, 588, 695 |
| DpnI | GATC | 3 cut(s) | 269, 363, 503 |
| DpnII | GATC | 3 cut(s) | 267, 361, 501 |
| Eco130I | CCWWGG | 4 cut(s) | 126, 536, 596, 638 |
| Eco24I | GRGCYC | 4 cut(s) | 566, 596, 626, 638 |
| Eco47I | GGWCC | 1 cut(s) | 190 |
| EcoO109I | RGGNCCY | 3 cut(s) | 190, 592, 634 |
| EcoRII | CCWGG | 7 cut(s) | 186, 546, 558, 576, 606, 618, 630 |
| EcoT14I | CCWWGG | 4 cut(s) | 126, 536, 596, 638 |
| EcoT38I | GRGCYC | 4 cut(s) | 566, 596, 626, 638 |
| ErhI | CCWWGG | 4 cut(s) | 126, 536, 596, 638 |
| FaeI | CATG | 3 cut(s) | 74, 130, 683 |
| FaiI | YATR | 8 cut(s) | 48, 72, 128, 255, 257, 342, 456, 681 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 752, 784 |
| FatI | CATG | 3 cut(s) | 70, 126, 679 |
| FauNDI | CATATG | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 8 cut(s) | 30, 286, 388, 543, 573, 603, 743, 788 |
| FriOI | GRGCYC | 4 cut(s) | 566, 596, 626, 638 |
| Fsp4HI | GCNGC | 8 cut(s) | 30, 286, 388, 543, 573, 603, 743, 788 |
| FspBI | CTAG | 2 cut(s) | 194, 446 |
| GluI | GCNGC | 8 cut(s) | 30, 286, 388, 543, 573, 603, 743, 788 |
| GsaI | CCCAGC | 1 cut(s) | 264 |
| HaeIII | GGCC | 5 cut(s) | 529, 594, 624, 636, 705 |
| HapII | CCGG | 2 cut(s) | 526, 702 |
| Hin1II | CATG | 3 cut(s) | 74, 130, 683 |
| HincII | GTYRAC | 2 cut(s) | 175, 781 |
| HindII | GTYRAC | 2 cut(s) | 175, 781 |
| HinfI | GANTC | 3 cut(s) | 230, 652, 691 |
| HpaII | CCGG | 2 cut(s) | 526, 702 |
| Hpy166II | GTNNAC | 3 cut(s) | 175, 328, 781 |
| Hpy188III | TCNNGA | 4 cut(s) | 410, 465, 567, 688 |
| Hpy8I | GTNNAC | 3 cut(s) | 175, 328, 781 |
| HpyAV | CCTTC | 2 cut(s) | 193, 638 |
| HpyCH4III | ACNGT | 2 cut(s) | 179, 251 |
| HpyCH4IV | ACGT | 1 cut(s) | 406 |
| HpyCH4V | TGCA | 4 cut(s) | 59, 288, 369, 420 |
| HpyF3I | CTNAG | 4 cut(s) | 486, 506, 588, 695 |
| HpySE526I | ACGT | 1 cut(s) | 406 |
| Hsp92II | CATG | 3 cut(s) | 74, 130, 683 |
| Kzo9I | GATC | 3 cut(s) | 267, 361, 501 |
| Lsp1109I | GCAGC | 6 cut(s) | 16, 272, 554, 584, 614, 729 |
| LweI | GCATC | 3 cut(s) | 16, 46, 693 |
| MaeI | CTAG | 2 cut(s) | 194, 446 |
| MaeII | ACGT | 1 cut(s) | 406 |
| MaeIII | GTNAC | 1 cut(s) | 407 |
| MalI | GATC | 3 cut(s) | 269, 363, 503 |
| MboI | GATC | 3 cut(s) | 267, 361, 501 |
| MboII | GAAGA | 1 cut(s) | 760 |
| MfeI | CAATTG | 1 cut(s) | 772 |
| MhlI | GDGCHC | 5 cut(s) | 566, 596, 626, 638, 662 |
| MluCI | AATT | 5 cut(s) | 18, 49, 669, 715, 772 |
| MlyI | GAGTC | 1 cut(s) | 646 |
| MnlI | CCTC | 6 cut(s) | 67, 124, 220, 258, 382, 717 |
| MslI | CAYNNNNRTG | 1 cut(s) | 323 |
| MspI | CCGG | 2 cut(s) | 526, 702 |
| MspR9I | CCNGG | 8 cut(s) | 188, 526, 548, 560, 578, 608, 620, 632 |
| MunI | CAATTG | 1 cut(s) | 772 |
| MvaI | CCWGG | 7 cut(s) | 188, 548, 560, 578, 608, 620, 632 |
| MvnI | CGCG | 1 cut(s) | 390 |
| NciI | CCSGG | 1 cut(s) | 526 |
| NcoI | CCATGG | 1 cut(s) | 126 |
| NdeI | CATATG | 1 cut(s) | 255 |
| NdeII | GATC | 3 cut(s) | 267, 361, 501 |
| NheI | GCTAGC | 1 cut(s) | 445 |
| NlaIII | CATG | 3 cut(s) | 74, 130, 683 |
| NlaIV | GGNNCC | 4 cut(s) | 594, 624, 636, 661 |
| NmuCI | GTSAC | 1 cut(s) | 407 |
| OliI | CACNNNNGTG | 1 cut(s) | 323 |
| PasI | CCCWGGG | 2 cut(s) | 559, 619 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 387 |
| PfeI | GAWTC | 2 cut(s) | 230, 691 |
| PflFI | GACNNNGTC | 1 cut(s) | 170 |
| PfoI | TCCNGGA | 1 cut(s) | 186 |
| PkrI | GCNGC | 8 cut(s) | 31, 287, 389, 544, 574, 604, 744, 789 |
| PleI | GAGTC | 1 cut(s) | 646 |
| PpsI | GAGTC | 1 cut(s) | 646 |
| PpuMI | RGGWCCY | 1 cut(s) | 190 |
| Psp5II | RGGWCCY | 1 cut(s) | 190 |
| Psp6I | CCWGG | 7 cut(s) | 186, 546, 558, 576, 606, 618, 630 |
| PspFI | CCCAGC | 1 cut(s) | 260 |
| PspGI | CCWGG | 7 cut(s) | 186, 546, 558, 576, 606, 618, 630 |
| PspN4I | GGNNCC | 4 cut(s) | 594, 624, 636, 661 |
| PspOMI | GGGCCC | 3 cut(s) | 592, 622, 634 |
| PspPI | GGNCC | 8 cut(s) | 190, 592, 593, 622, 623, 634, 635, 704 |
| PspPPI | RGGWCCY | 1 cut(s) | 190 |
| PstNI | CAGNNNCTG | 1 cut(s) | 742 |
| PsyI | GACNNNGTC | 1 cut(s) | 170 |
| RsaI | GTAC | 3 cut(s) | 395, 700, 735 |
| RsaNI | GTAC | 3 cut(s) | 394, 699, 734 |
| RseI | CAYNNNNRTG | 1 cut(s) | 323 |
| SatI | GCNGC | 8 cut(s) | 30, 286, 388, 543, 573, 603, 743, 788 |
| Sau3AI | GATC | 3 cut(s) | 267, 361, 501 |
| Sau96I | GGNCC | 8 cut(s) | 190, 592, 593, 622, 623, 634, 635, 704 |
| SchI | GAGTC | 1 cut(s) | 646 |
| ScrFI | CCNGG | 8 cut(s) | 188, 526, 548, 560, 578, 608, 620, 632 |
| SduI | GDGCHC | 5 cut(s) | 566, 596, 626, 638, 662 |
| SfaNI | GCATC | 3 cut(s) | 16, 46, 693 |
| SinI | GGWCC | 1 cut(s) | 190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 323 |
| SmlI | CTYRAG | 1 cut(s) | 565 |
| SmoI | CTYRAG | 1 cut(s) | 565 |
| Sse9I | AATT | 5 cut(s) | 18, 49, 669, 715, 772 |
| SsiI | CCGC | 2 cut(s) | 388, 787 |
| SspMI | CTAG | 2 cut(s) | 194, 446 |
| StyD4I | CCNGG | 8 cut(s) | 186, 524, 546, 558, 576, 606, 618, 630 |
| StyI | CCWWGG | 4 cut(s) | 126, 536, 596, 638 |
| TaaI | ACNGT | 2 cut(s) | 179, 251 |
| TaiI | ACGT | 1 cut(s) | 409 |
| TasI | AATT | 5 cut(s) | 18, 49, 669, 715, 772 |
| TatI | WGTACW | 1 cut(s) | 733 |
| TauI | GCSGC | 2 cut(s) | 390, 790 |
| TfiI | GAWTC | 2 cut(s) | 230, 691 |
| TscAI | CASTG | 1 cut(s) | 422 |
| TseFI | GTSAC | 1 cut(s) | 407 |
| TseI | GCWGC | 6 cut(s) | 29, 285, 542, 572, 602, 742 |
| Tsp45I | GTSAC | 1 cut(s) | 407 |
| TspDTI | ATGAA | 1 cut(s) | 713 |
| TspRI | CASTG | 1 cut(s) | 422 |
| Tth111I | GACNNNGTC | 1 cut(s) | 170 |
| VpaK11BI | GGWCC | 1 cut(s) | 190 |
| XapI | RAATTY | 1 cut(s) | 669 |
| XspI | CTAG | 2 cut(s) | 194, 446 |