ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 91, 400, 777 |
| AcsI | RAATTY | 2 cut(s) | 575, 747 |
| AfaI | GTAC | 2 cut(s) | 356, 707 |
| AflIII | ACRYGT | 2 cut(s) | 357, 680 |
| AgsI | TTSAA | 4 cut(s) | 489, 552, 746, 752 |
| AjiI | CACGTC | 1 cut(s) | 568 |
| AjnI | CCWGG | 1 cut(s) | 308 |
| AluBI | AGCT | 7 cut(s) | 197, 216, 383, 516, 533, 606, 702 |
| AluI | AGCT | 7 cut(s) | 197, 216, 383, 516, 533, 606, 702 |
| Alw26I | GTCTC | 3 cut(s) | 163, 427, 730 |
| AlwI | GGATC | 3 cut(s) | 91, 400, 777 |
| AoxI | GGCC | 1 cut(s) | 209 |
| ApeKI | GCWGC | 1 cut(s) | 695 |
| ApoI | RAATTY | 2 cut(s) | 575, 747 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 682 |
| AspLEI | GCGC | 1 cut(s) | 665 |
| AspS9I | GGNCC | 3 cut(s) | 306, 474, 556 |
| AsuC2I | CCSGG | 1 cut(s) | 168 |
| AsuHPI | GGTGA | 2 cut(s) | 156, 434 |
| AvaII | GGWCC | 3 cut(s) | 306, 474, 556 |
| BbvI | GCAGC | 1 cut(s) | 682 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 814 |
| BciT130I | CCWGG | 1 cut(s) | 310 |
| BcnI | CCSGG | 1 cut(s) | 168 |
| BcoDI | GTCTC | 3 cut(s) | 163, 427, 730 |
| BfaI | CTAG | 6 cut(s) | 174, 543, 646, 703, 799, 817 |
| BisI | GCNGC | 1 cut(s) | 696 |
| BlsI | GCNGC | 1 cut(s) | 697 |
| BmcAI | AGTACT | 1 cut(s) | 707 |
| Bme1390I | CCNGG | 2 cut(s) | 168, 310 |
| Bme18I | GGWCC | 3 cut(s) | 306, 474, 556 |
| BmgBI | CACGTC | 1 cut(s) | 568 |
| BmgT120I | GGNCC | 3 cut(s) | 306, 474, 556 |
| BmiI | GGNNCC | 1 cut(s) | 557 |
| BmrFI | CCNGG | 2 cut(s) | 168, 310 |
| BmrI | ACTGGG | 1 cut(s) | 234 |
| BmsI | GCATC | 1 cut(s) | 665 |
| BmuI | ACTGGG | 1 cut(s) | 234 |
| BpmI | CTGGAG | 1 cut(s) | 238 |
| BpuMI | CCSGG | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 1 cut(s) | 417 |
| Bse1I | ACTGG | 2 cut(s) | 229, 338 |
| Bse3DI | GCAATG | 1 cut(s) | 411 |
| BseBI | CCWGG | 1 cut(s) | 310 |
| BseDI | CCNNGG | 1 cut(s) | 417 |
| BseGI | GGATG | 1 cut(s) | 251 |
| BseMI | GCAATG | 1 cut(s) | 411 |
| BseMII | CTCAG | 2 cut(s) | 44, 120 |
| BseNI | ACTGG | 2 cut(s) | 229, 338 |
| BseXI | GCAGC | 1 cut(s) | 682 |
| BsgI | GTGCAG | 1 cut(s) | 797 |
| BshFI | GGCC | 1 cut(s) | 211 |
| BsiSI | CCGG | 1 cut(s) | 167 |
| BsmAI | GTCTC | 3 cut(s) | 163, 427, 730 |
| BsmBI | CGTCTC | 1 cut(s) | 163 |
| BsnI | GGCC | 1 cut(s) | 211 |
| Bsp143I | GATC | 8 cut(s) | 83, 88, 109, 368, 392, 539, 726, 782 |
| BspANI | GGCC | 1 cut(s) | 211 |
| BspCNI | CTCAG | 2 cut(s) | 43, 119 |
| BspLI | GGNNCC | 1 cut(s) | 557 |
| BspPI | GGATC | 3 cut(s) | 91, 400, 777 |
| BspQI | GCTCTTC | 1 cut(s) | 718 |
| BsrDI | GCAATG | 1 cut(s) | 411 |
| BsrI | ACTGG | 2 cut(s) | 229, 338 |
| BssECI | CCNNGG | 1 cut(s) | 417 |
| BssMI | GATC | 8 cut(s) | 83, 88, 109, 368, 392, 539, 726, 782 |
| BssT1I | CCWWGG | 1 cut(s) | 417 |
| Bst2UI | CCWGG | 1 cut(s) | 310 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 269 |
| Bst6I | CTCTTC | 3 cut(s) | 166, 718, 728 |
| BstC8I | GCNNGC | 1 cut(s) | 700 |
| BstDEI | CTNAG | 2 cut(s) | 30, 106 |
| BstF5I | GGATG | 1 cut(s) | 251 |
| BstHHI | GCGC | 1 cut(s) | 665 |
| BstKTI | GATC | 8 cut(s) | 86, 91, 112, 371, 395, 542, 729, 785 |
| BstMAI | GTCTC | 3 cut(s) | 163, 427, 730 |
| BstMBI | GATC | 8 cut(s) | 83, 88, 109, 368, 392, 539, 726, 782 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 662, 708 |
| BstNI | CCWGG | 1 cut(s) | 310 |
| BstNSI | RCATGY | 2 cut(s) | 361, 684 |
| BstSCI | CCNGG | 2 cut(s) | 166, 308 |
| BstV1I | GCAGC | 1 cut(s) | 682 |
| BstX2I | RGATCY | 2 cut(s) | 83, 392 |
| BstYI | RGATCY | 2 cut(s) | 83, 392 |
| BsuRI | GGCC | 1 cut(s) | 211 |
| BtrI | CACGTC | 1 cut(s) | 568 |
| BtsCI | GGATG | 1 cut(s) | 251 |
| Cac8I | GCNNGC | 1 cut(s) | 700 |
| CfoI | GCGC | 1 cut(s) | 665 |
| Cfr13I | GGNCC | 3 cut(s) | 306, 474, 556 |
| Csp6I | GTAC | 2 cut(s) | 355, 706 |
| CviAII | CATG | 4 cut(s) | 358, 622, 681, 771 |
| CviQI | GTAC | 2 cut(s) | 355, 706 |
| DdeI | CTNAG | 2 cut(s) | 30, 106 |
| DpnI | GATC | 8 cut(s) | 85, 90, 111, 370, 394, 541, 728, 784 |
| DpnII | GATC | 8 cut(s) | 83, 88, 109, 368, 392, 539, 726, 782 |
| Eam1104I | CTCTTC | 3 cut(s) | 166, 718, 728 |
| EarI | CTCTTC | 3 cut(s) | 166, 718, 728 |
| Eco130I | CCWWGG | 1 cut(s) | 417 |
| Eco47I | GGWCC | 3 cut(s) | 306, 474, 556 |
| EcoRI | GAATTC | 1 cut(s) | 575 |
| EcoRII | CCWGG | 1 cut(s) | 308 |
| EcoT14I | CCWWGG | 1 cut(s) | 417 |
| ErhI | CCWWGG | 1 cut(s) | 417 |
| Esp3I | CGTCTC | 1 cut(s) | 163 |
| FaeI | CATG | 4 cut(s) | 361, 625, 684, 774 |
| FatI | CATG | 4 cut(s) | 357, 621, 680, 770 |
| Fnu4HI | GCNGC | 1 cut(s) | 696 |
| FokI | GGATG | 1 cut(s) | 258 |
| Fsp4HI | GCNGC | 1 cut(s) | 696 |
| FspBI | CTAG | 6 cut(s) | 174, 543, 646, 703, 799, 817 |
| GlaI | GCGC | 1 cut(s) | 664 |
| GluI | GCNGC | 1 cut(s) | 696 |
| GsuI | CTGGAG | 1 cut(s) | 238 |
| HaeIII | GGCC | 1 cut(s) | 211 |
| HapII | CCGG | 1 cut(s) | 167 |
| HhaI | GCGC | 1 cut(s) | 665 |
| Hin1II | CATG | 4 cut(s) | 361, 625, 684, 774 |
| Hin6I | GCGC | 1 cut(s) | 663 |
| HinP1I | GCGC | 1 cut(s) | 663 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HindIII | AAGCTT | 2 cut(s) | 381, 514 |
| HinfI | GANTC | 7 cut(s) | 98, 408, 446, 479, 672, 742, 831 |
| HpaII | CCGG | 1 cut(s) | 167 |
| HphI | GGTGA | 2 cut(s) | 156, 434 |
| Hpy166II | GTNNAC | 3 cut(s) | 23, 141, 363 |
| Hpy188I | TCNGA | 7 cut(s) | 88, 109, 259, 451, 478, 581, 677 |
| Hpy188III | TCNNGA | 2 cut(s) | 486, 730 |
| Hpy8I | GTNNAC | 3 cut(s) | 23, 141, 363 |
| HpyAV | CCTTC | 3 cut(s) | 23, 201, 494 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 269 |
| HpyCH4IV | ACGT | 3 cut(s) | 156, 365, 567 |
| HpyCH4V | TGCA | 6 cut(s) | 43, 55, 528, 698, 767, 814 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 662, 708 |
| HpyF3I | CTNAG | 2 cut(s) | 30, 106 |
| HpySE526I | ACGT | 3 cut(s) | 156, 365, 567 |
| Hsp92II | CATG | 4 cut(s) | 361, 625, 684, 774 |
| HspAI | GCGC | 1 cut(s) | 663 |
| Kzo9I | GATC | 8 cut(s) | 83, 88, 109, 368, 392, 539, 726, 782 |
| LguI | GCTCTTC | 1 cut(s) | 718 |
| Lsp1109I | GCAGC | 1 cut(s) | 682 |
| LweI | GCATC | 1 cut(s) | 665 |
| MaeI | CTAG | 6 cut(s) | 174, 543, 646, 703, 799, 817 |
| MaeII | ACGT | 3 cut(s) | 156, 365, 567 |
| MaeIII | GTNAC | 1 cut(s) | 627 |
| MalI | GATC | 8 cut(s) | 85, 90, 111, 370, 394, 541, 728, 784 |
| MboI | GATC | 8 cut(s) | 83, 88, 109, 368, 392, 539, 726, 782 |
| MboII | GAAGA | 4 cut(s) | 153, 705, 745, 815 |
| MfeI | CAATTG | 1 cut(s) | 588 |
| MflI | RGATCY | 2 cut(s) | 83, 392 |
| MluCI | AATT | 4 cut(s) | 38, 575, 588, 747 |
| MlyI | GAGTC | 1 cut(s) | 473 |
| MmeI | TCCRAC | 3 cut(s) | 15, 84, 501 |
| MnlI | CCTC | 7 cut(s) | 39, 115, 213, 236, 586, 767, 796 |
| MroXI | GAANNNNTTC | 1 cut(s) | 682 |
| MseI | TTAA | 1 cut(s) | 439 |
| MspI | CCGG | 1 cut(s) | 167 |
| MspR9I | CCNGG | 2 cut(s) | 168, 310 |
| MunI | CAATTG | 1 cut(s) | 588 |
| MvaI | CCWGG | 1 cut(s) | 310 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 662, 708 |
| NciI | CCSGG | 1 cut(s) | 168 |
| NdeII | GATC | 8 cut(s) | 83, 88, 109, 368, 392, 539, 726, 782 |
| NlaIII | CATG | 4 cut(s) | 361, 625, 684, 774 |
| NlaIV | GGNNCC | 1 cut(s) | 557 |
| NmeAIII | GCCGAG | 1 cut(s) | 691 |
| NmuCI | GTSAC | 1 cut(s) | 627 |
| NspI | RCATGY | 2 cut(s) | 361, 684 |
| PciI | ACATGT | 2 cut(s) | 357, 680 |
| PciSI | GCTCTTC | 1 cut(s) | 718 |
| PdmI | GAANNNNTTC | 1 cut(s) | 682 |
| PfeI | GAWTC | 6 cut(s) | 98, 408, 446, 672, 742, 831 |
| PfoI | TCCNGGA | 1 cut(s) | 308 |
| PkrI | GCNGC | 1 cut(s) | 697 |
| PleI | GAGTC | 1 cut(s) | 473 |
| PpsI | GAGTC | 1 cut(s) | 473 |
| PscI | ACATGT | 2 cut(s) | 357, 680 |
| Psp6I | CCWGG | 1 cut(s) | 308 |
| PspGI | CCWGG | 1 cut(s) | 308 |
| PspN4I | GGNNCC | 1 cut(s) | 557 |
| PspPI | GGNCC | 3 cut(s) | 306, 474, 556 |
| PsuI | RGATCY | 2 cut(s) | 83, 392 |
| RsaI | GTAC | 2 cut(s) | 356, 707 |
| RsaNI | GTAC | 2 cut(s) | 355, 706 |
| SapI | GCTCTTC | 1 cut(s) | 718 |
| SaqAI | TTAA | 1 cut(s) | 439 |
| SatI | GCNGC | 1 cut(s) | 696 |
| Sau3AI | GATC | 8 cut(s) | 83, 88, 109, 368, 392, 539, 726, 782 |
| Sau96I | GGNCC | 3 cut(s) | 306, 474, 556 |
| ScaI | AGTACT | 1 cut(s) | 707 |
| SchI | GAGTC | 1 cut(s) | 473 |
| ScrFI | CCNGG | 2 cut(s) | 168, 310 |
| SfaNI | GCATC | 1 cut(s) | 665 |
| SinI | GGWCC | 3 cut(s) | 306, 474, 556 |
| Sse9I | AATT | 4 cut(s) | 38, 575, 588, 747 |
| SspMI | CTAG | 6 cut(s) | 174, 543, 646, 703, 799, 817 |
| StyD4I | CCNGG | 2 cut(s) | 166, 308 |
| StyI | CCWWGG | 1 cut(s) | 417 |
| TaaI | ACNGT | 2 cut(s) | 145, 269 |
| TaiI | ACGT | 3 cut(s) | 159, 368, 570 |
| TaqI | TCGA | 2 cut(s) | 101, 731 |
| TasI | AATT | 4 cut(s) | 38, 575, 588, 747 |
| TatI | WGTACW | 1 cut(s) | 705 |
| TfiI | GAWTC | 6 cut(s) | 98, 408, 446, 672, 742, 831 |
| Tru1I | TTAA | 1 cut(s) | 439 |
| Tru9I | TTAA | 1 cut(s) | 439 |
| TseFI | GTSAC | 1 cut(s) | 627 |
| TseI | GCWGC | 1 cut(s) | 695 |
| Tsp45I | GTSAC | 1 cut(s) | 627 |
| TspDTI | ATGAA | 2 cut(s) | 400, 513 |
| TspGWI | ACGGA | 1 cut(s) | 255 |
| VpaK11BI | GGWCC | 3 cut(s) | 306, 474, 556 |
| XapI | RAATTY | 2 cut(s) | 575, 747 |
| XceI | RCATGY | 2 cut(s) | 361, 684 |
| XmnI | GAANNNNTTC | 1 cut(s) | 682 |
| XspI | CTAG | 6 cut(s) | 174, 543, 646, 703, 799, 817 |
| ZrmI | AGTACT | 1 cut(s) | 707 |