Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 71 |
| Acc36I | ACCTGC | 1 cut(s) | 243 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 290 |
| AccII | CGCG | 1 cut(s) | 27 |
| AciI | CCGC | 3 cut(s) | 27, 238, 352 |
| AcoI | YGGCCR | 1 cut(s) | 298 |
| AcuI | CTGAAG | 1 cut(s) | 207 |
| AcyI | GRCGYC | 1 cut(s) | 270 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 188, 290 |
| AflII | CTTAAG | 1 cut(s) | 86 |
| AhlI | ACTAGT | 1 cut(s) | 338 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 290 |
| AoxI | GGCC | 3 cut(s) | 54, 292, 298 |
| ApeKI | GCWGC | 1 cut(s) | 30 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 48 |
| AspS9I | GGNCC | 2 cut(s) | 55, 281 |
| AsuHPI | GGTGA | 1 cut(s) | 246 |
| AvaII | GGWCC | 1 cut(s) | 281 |
| BbsI | GAAGAC | 1 cut(s) | 213 |
| BbvI | GCAGC | 1 cut(s) | 42 |
| BceAI | ACGGC | 1 cut(s) | 146 |
| BcuI | ACTAGT | 1 cut(s) | 338 |
| BfaI | CTAG | 2 cut(s) | 339, 358 |
| BfrI | CTTAAG | 1 cut(s) | 86 |
| BfuAI | ACCTGC | 1 cut(s) | 243 |
| BisI | GCNGC | 2 cut(s) | 28, 31 |
| BlsI | GCNGC | 2 cut(s) | 29, 32 |
| Bme18I | GGWCC | 1 cut(s) | 281 |
| BmgT120I | GGNCC | 2 cut(s) | 55, 281 |
| BmsI | GCATC | 1 cut(s) | 203 |
| BpiI | GAAGAC | 1 cut(s) | 213 |
| Bpu10I | CCTNAGC | 1 cut(s) | 101 |
| BsaHI | GRCGYC | 1 cut(s) | 270 |
| BsaJI | CCNNGG | 1 cut(s) | 295 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 192, 222 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 188, 290 |
| Bse118I | RCCGGY | 1 cut(s) | 300 |
| Bse1I | ACTGG | 1 cut(s) | 284 |
| BseDI | CCNNGG | 1 cut(s) | 295 |
| BseGI | GGATG | 1 cut(s) | 122 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 188, 290 |
| BseNI | ACTGG | 1 cut(s) | 284 |
| BseXI | GCAGC | 1 cut(s) | 42 |
| Bsh1236I | CGCG | 1 cut(s) | 27 |
| BshFI | GGCC | 3 cut(s) | 56, 294, 300 |
| BsiSI | CCGG | 1 cut(s) | 301 |
| BslFI | GGGAC | 1 cut(s) | 260 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 188, 290 |
| BsmFI | GGGAC | 1 cut(s) | 260 |
| BsmI | GAATGC | 1 cut(s) | 350 |
| BsnI | GGCC | 3 cut(s) | 56, 294, 300 |
| BspACI | CCGC | 3 cut(s) | 27, 238, 352 |
| BspANI | GGCC | 3 cut(s) | 56, 294, 300 |
| BspFNI | CGCG | 1 cut(s) | 27 |
| BspHI | TCATGA | 2 cut(s) | 61, 163 |
| BspMI | ACCTGC | 1 cut(s) | 243 |
| BspTI | CTTAAG | 1 cut(s) | 86 |
| BsrFI | RCCGGY | 1 cut(s) | 300 |
| BsrI | ACTGG | 1 cut(s) | 284 |
| BssAI | RCCGGY | 1 cut(s) | 300 |
| BssECI | CCNNGG | 1 cut(s) | 295 |
| BssNI | GRCGYC | 1 cut(s) | 270 |
| BssT1I | CCWWGG | 1 cut(s) | 295 |
| Bst4CI | ACNGT | 2 cut(s) | 23, 191 |
| BstACI | GRCGYC | 1 cut(s) | 270 |
| BstAFI | CTTAAG | 1 cut(s) | 86 |
| BstC8I | GCNNGC | 1 cut(s) | 292 |
| BstDEI | CTNAG | 1 cut(s) | 101 |
| BstF5I | GGATG | 1 cut(s) | 122 |
| BstFNI | CGCG | 1 cut(s) | 27 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 324 |
| BstUI | CGCG | 1 cut(s) | 27 |
| BstV1I | GCAGC | 1 cut(s) | 42 |
| BstV2I | GAAGAC | 1 cut(s) | 213 |
| BsuRI | GGCC | 3 cut(s) | 56, 294, 300 |
| BtsCI | GGATG | 1 cut(s) | 122 |
| BveI | ACCTGC | 1 cut(s) | 243 |
| Cac8I | GCNNGC | 1 cut(s) | 292 |
| CaiI | CAGNNNCTG | 1 cut(s) | 290 |
| CciI | TCATGA | 2 cut(s) | 61, 163 |
| Cfr10I | RCCGGY | 1 cut(s) | 300 |
| Cfr13I | GGNCC | 2 cut(s) | 55, 281 |
| CseI | GACGC | 1 cut(s) | 278 |
| CviAII | CATG | 2 cut(s) | 62, 164 |
| CviJI | RGCY | 5 cut(s) | 56, 133, 294, 300, 327 |
| CviKI_1 | RGCY | 5 cut(s) | 56, 133, 294, 300, 327 |
| DdeI | CTNAG | 1 cut(s) | 101 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 71 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 71 |
| EaeI | YGGCCR | 1 cut(s) | 298 |
| Eco130I | CCWWGG | 1 cut(s) | 295 |
| Eco47I | GGWCC | 1 cut(s) | 281 |
| Eco57I | CTGAAG | 1 cut(s) | 207 |
| EcoO109I | RGGNCCY | 1 cut(s) | 55 |
| EcoT14I | CCWWGG | 1 cut(s) | 295 |
| ErhI | CCWWGG | 1 cut(s) | 295 |
| FaeI | CATG | 2 cut(s) | 65, 167 |
| FaiI | YATR | 4 cut(s) | 63, 165, 172, 324 |
| FaqI | GGGAC | 1 cut(s) | 260 |
| FatI | CATG | 2 cut(s) | 61, 163 |
| Fnu4HI | GCNGC | 2 cut(s) | 28, 31 |
| FokI | GGATG | 1 cut(s) | 109 |
| Fsp4HI | GCNGC | 2 cut(s) | 28, 31 |
| FspBI | CTAG | 2 cut(s) | 339, 358 |
| GluI | GCNGC | 2 cut(s) | 28, 31 |
| HaeIII | GGCC | 3 cut(s) | 56, 294, 300 |
| HapII | CCGG | 1 cut(s) | 301 |
| HgaI | GACGC | 1 cut(s) | 278 |
| Hin1I | GRCGYC | 1 cut(s) | 270 |
| Hin1II | CATG | 2 cut(s) | 65, 167 |
| HinfI | GANTC | 1 cut(s) | 44 |
| HpaII | CCGG | 1 cut(s) | 301 |
| HphI | GGTGA | 1 cut(s) | 246 |
| Hpy188I | TCNGA | 1 cut(s) | 226 |
| Hpy188III | TCNNGA | 4 cut(s) | 62, 118, 164, 198 |
| HpyAV | CCTTC | 1 cut(s) | 68 |
| HpyCH4III | ACNGT | 2 cut(s) | 23, 191 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 1 cut(s) | 194 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 324 |
| HpyF3I | CTNAG | 1 cut(s) | 101 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92I | GRCGYC | 1 cut(s) | 270 |
| Hsp92II | CATG | 2 cut(s) | 65, 167 |
| Lsp1109I | GCAGC | 1 cut(s) | 42 |
| LweI | GCATC | 1 cut(s) | 203 |
| MaeI | CTAG | 2 cut(s) | 339, 358 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MaeIII | GTNAC | 2 cut(s) | 185, 334 |
| MboII | GAAGA | 1 cut(s) | 213 |
| MluCI | AATT | 1 cut(s) | 259 |
| MnlI | CCTC | 2 cut(s) | 160, 194 |
| MroXI | GAANNNNTTC | 1 cut(s) | 48 |
| MseI | TTAA | 3 cut(s) | 87, 144, 242 |
| MspCI | CTTAAG | 1 cut(s) | 86 |
| MspI | CCGG | 1 cut(s) | 301 |
| Mva1269I | GAATGC | 1 cut(s) | 350 |
| MvnI | CGCG | 1 cut(s) | 27 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 324 |
| NlaIII | CATG | 2 cut(s) | 65, 167 |
| NmeAIII | GCCGAG | 1 cut(s) | 298 |
| NmuCI | GTSAC | 2 cut(s) | 185, 334 |
| PagI | TCATGA | 2 cut(s) | 61, 163 |
| PctI | GAATGC | 1 cut(s) | 350 |
| PdmI | GAANNNNTTC | 1 cut(s) | 48 |
| PfeI | GAWTC | 1 cut(s) | 44 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 290 |
| PkrI | GCNGC | 2 cut(s) | 29, 32 |
| PspPI | GGNCC | 2 cut(s) | 55, 281 |
| PstNI | CAGNNNCTG | 1 cut(s) | 290 |
| SaqAI | TTAA | 3 cut(s) | 87, 144, 242 |
| SatI | GCNGC | 2 cut(s) | 28, 31 |
| Sau96I | GGNCC | 2 cut(s) | 55, 281 |
| SetI | ASST | 5 cut(s) | 9, 69, 93, 237, 359 |
| SfaNI | GCATC | 1 cut(s) | 203 |
| SinI | GGWCC | 1 cut(s) | 281 |
| SmlI | CTYRAG | 1 cut(s) | 86 |
| SmoI | CTYRAG | 1 cut(s) | 86 |
| SpeI | ACTAGT | 1 cut(s) | 338 |
| Sse9I | AATT | 1 cut(s) | 259 |
| SsiI | CCGC | 3 cut(s) | 27, 238, 352 |
| SspMI | CTAG | 2 cut(s) | 339, 358 |
| StyI | CCWWGG | 1 cut(s) | 295 |
| TaaI | ACNGT | 2 cut(s) | 23, 191 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TasI | AATT | 1 cut(s) | 259 |
| TauI | GCSGC | 1 cut(s) | 30 |
| TfiI | GAWTC | 1 cut(s) | 44 |
| Tru1I | TTAA | 3 cut(s) | 87, 144, 242 |
| Tru9I | TTAA | 3 cut(s) | 87, 144, 242 |
| TseFI | GTSAC | 2 cut(s) | 185, 334 |
| TseI | GCWGC | 1 cut(s) | 30 |
| Tsp45I | GTSAC | 2 cut(s) | 185, 334 |
| TspDTI | ATGAA | 5 cut(s) | 17, 50, 128, 152, 253 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 290 |
| Vha464I | CTTAAG | 1 cut(s) | 86 |
| VpaK11BI | GGWCC | 1 cut(s) | 281 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 88 |
| XmnI | GAANNNNTTC | 1 cut(s) | 48 |
| XspI | CTAG | 2 cut(s) | 339, 358 |