ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 166, 281, 424 |
| AcsI | RAATTY | 1 cut(s) | 26 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 190 |
| AflIII | ACRYGT | 1 cut(s) | 303 |
| AgsI | TTSAA | 3 cut(s) | 300, 362, 440 |
| AjnI | CCWGG | 1 cut(s) | 460 |
| AluBI | AGCT | 2 cut(s) | 119, 137 |
| AluI | AGCT | 2 cut(s) | 119, 137 |
| Alw21I | GWGCWC | 1 cut(s) | 403 |
| Alw26I | GTCTC | 2 cut(s) | 111, 462 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 467 |
| AoxI | GGCC | 1 cut(s) | 464 |
| ApeKI | GCWGC | 1 cut(s) | 194 |
| ApoI | RAATTY | 1 cut(s) | 26 |
| AspS9I | GGNCC | 2 cut(s) | 345, 464 |
| AsuHPI | GGTGA | 1 cut(s) | 173 |
| AvaII | GGWCC | 1 cut(s) | 345 |
| Bbv12I | GWGCWC | 1 cut(s) | 403 |
| BbvI | GCAGC | 1 cut(s) | 206 |
| BccI | CCATC | 3 cut(s) | 260, 265, 464 |
| BciT130I | CCWGG | 1 cut(s) | 462 |
| BciVI | GTATCC | 1 cut(s) | 456 |
| BcoDI | GTCTC | 2 cut(s) | 111, 462 |
| BfuI | GTATCC | 1 cut(s) | 456 |
| BisI | GCNGC | 2 cut(s) | 195, 425 |
| BlsI | GCNGC | 2 cut(s) | 196, 426 |
| Bme1390I | CCNGG | 1 cut(s) | 462 |
| Bme18I | GGWCC | 1 cut(s) | 345 |
| BmgT120I | GGNCC | 2 cut(s) | 345, 464 |
| BmiI | GGNNCC | 1 cut(s) | 347 |
| BmrFI | CCNGG | 1 cut(s) | 462 |
| BpmI | CTGGAG | 1 cut(s) | 444 |
| Bpu10I | CCTNAGC | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 2 cut(s) | 321, 461 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 442, 472 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 190 |
| Bse1I | ACTGG | 1 cut(s) | 178 |
| Bse3DI | GCAATG | 1 cut(s) | 387 |
| BseBI | CCWGG | 1 cut(s) | 462 |
| BseDI | CCNNGG | 2 cut(s) | 321, 461 |
| BseGI | GGATG | 4 cut(s) | 86, 265, 276, 331 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 190 |
| BseMI | GCAATG | 1 cut(s) | 387 |
| BseMII | CTCAG | 2 cut(s) | 122, 402 |
| BseNI | ACTGG | 1 cut(s) | 178 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BseXI | GCAGC | 1 cut(s) | 206 |
| BshFI | GGCC | 1 cut(s) | 466 |
| BsiHKAI | GWGCWC | 1 cut(s) | 403 |
| BsiSI | CCGG | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 190 |
| BsmAI | GTCTC | 2 cut(s) | 111, 462 |
| BsnI | GGCC | 1 cut(s) | 466 |
| Bsp1286I | GDGCHC | 1 cut(s) | 403 |
| BspACI | CCGC | 3 cut(s) | 166, 281, 424 |
| BspANI | GGCC | 1 cut(s) | 466 |
| BspCNI | CTCAG | 2 cut(s) | 121, 403 |
| BspHI | TCATGA | 1 cut(s) | 33 |
| BspLI | GGNNCC | 1 cut(s) | 347 |
| BsrDI | GCAATG | 1 cut(s) | 387 |
| BsrI | ACTGG | 1 cut(s) | 178 |
| BssECI | CCNNGG | 2 cut(s) | 321, 461 |
| BssT1I | CCWWGG | 1 cut(s) | 321 |
| Bst2UI | CCWGG | 1 cut(s) | 462 |
| Bst6I | CTCTTC | 2 cut(s) | 200, 411 |
| BstC8I | GCNNGC | 3 cut(s) | 279, 429, 476 |
| BstDEI | CTNAG | 4 cut(s) | 108, 138, 223, 411 |
| BstEII | GGTNACC | 1 cut(s) | 161 |
| BstF5I | GGATG | 4 cut(s) | 86, 265, 276, 331 |
| BstMAI | GTCTC | 2 cut(s) | 111, 462 |
| BstNI | CCWGG | 1 cut(s) | 462 |
| BstNSI | RCATGY | 2 cut(s) | 307, 478 |
| BstPI | GGTNACC | 1 cut(s) | 161 |
| BstSCI | CCNGG | 1 cut(s) | 460 |
| BstV1I | GCAGC | 1 cut(s) | 206 |
| BsuI | GTATCC | 1 cut(s) | 456 |
| BsuRI | GGCC | 1 cut(s) | 466 |
| BtsCI | GGATG | 4 cut(s) | 86, 265, 276, 331 |
| BtsI | GCAGTG | 1 cut(s) | 309 |
| BtsIMutI | CAGTG | 1 cut(s) | 309 |
| Cac8I | GCNNGC | 3 cut(s) | 279, 429, 476 |
| CaiI | CAGNNNCTG | 1 cut(s) | 467 |
| CciI | TCATGA | 1 cut(s) | 33 |
| Cfr13I | GGNCC | 2 cut(s) | 345, 464 |
| CviAII | CATG | 5 cut(s) | 34, 62, 147, 304, 475 |
| CviJI | RGCY | 5 cut(s) | 119, 137, 228, 431, 466 |
| CviKI_1 | RGCY | 5 cut(s) | 119, 137, 228, 431, 466 |
| DdeI | CTNAG | 4 cut(s) | 108, 138, 223, 411 |
| Eam1104I | CTCTTC | 2 cut(s) | 200, 411 |
| EarI | CTCTTC | 2 cut(s) | 200, 411 |
| Eco130I | CCWWGG | 1 cut(s) | 321 |
| Eco47I | GGWCC | 1 cut(s) | 345 |
| Eco91I | GGTNACC | 1 cut(s) | 161 |
| EcoO109I | RGGNCCY | 2 cut(s) | 345, 464 |
| EcoO65I | GGTNACC | 1 cut(s) | 161 |
| EcoRII | CCWGG | 1 cut(s) | 460 |
| EcoT14I | CCWWGG | 1 cut(s) | 321 |
| ErhI | CCWWGG | 1 cut(s) | 321 |
| FaeI | CATG | 5 cut(s) | 37, 65, 150, 307, 478 |
| FaiI | YATR | 7 cut(s) | 35, 58, 63, 148, 186, 305, 476 |
| FatI | CATG | 5 cut(s) | 33, 61, 146, 303, 474 |
| Fnu4HI | GCNGC | 2 cut(s) | 195, 425 |
| FokI | GGATG | 4 cut(s) | 73, 272, 283, 338 |
| Fsp4HI | GCNGC | 2 cut(s) | 195, 425 |
| GluI | GCNGC | 2 cut(s) | 195, 425 |
| GsuI | CTGGAG | 1 cut(s) | 444 |
| HaeIII | GGCC | 1 cut(s) | 466 |
| HapII | CCGG | 1 cut(s) | 53 |
| Hin1II | CATG | 5 cut(s) | 37, 65, 150, 307, 478 |
| HindIII | AAGCTT | 1 cut(s) | 117 |
| HinfI | GANTC | 1 cut(s) | 385 |
| HpaII | CCGG | 1 cut(s) | 53 |
| HphI | GGTGA | 1 cut(s) | 173 |
| Hpy166II | GTNNAC | 1 cut(s) | 309 |
| Hpy188I | TCNGA | 3 cut(s) | 14, 412, 450 |
| Hpy188III | TCNNGA | 2 cut(s) | 34, 110 |
| Hpy8I | GTNNAC | 1 cut(s) | 309 |
| HpyAV | CCTTC | 1 cut(s) | 184 |
| HpyCH4V | TGCA | 2 cut(s) | 154, 380 |
| HpyF3I | CTNAG | 4 cut(s) | 108, 138, 223, 411 |
| Hsp92II | CATG | 5 cut(s) | 37, 65, 150, 307, 478 |
| LmnI | GCTCC | 1 cut(s) | 274 |
| LpnPI | CCDG | 7 cut(s) | 66, 95, 159, 263, 413, 447, 474 |
| Lsp1109I | GCAGC | 1 cut(s) | 206 |
| MaeIII | GTNAC | 3 cut(s) | 142, 161, 283 |
| MboII | GAAGA | 3 cut(s) | 125, 217, 428 |
| MhlI | GDGCHC | 1 cut(s) | 403 |
| MluCI | AATT | 2 cut(s) | 26, 357 |
| MmeI | TCCRAC | 1 cut(s) | 473 |
| MnlI | CCTC | 9 cut(s) | 8, 58, 151, 201, 235, 250, 325, 406, 412 |
| MseI | TTAA | 1 cut(s) | 47 |
| MspI | CCGG | 1 cut(s) | 53 |
| MspR9I | CCNGG | 1 cut(s) | 462 |
| MvaI | CCWGG | 1 cut(s) | 462 |
| NlaIII | CATG | 5 cut(s) | 37, 65, 150, 307, 478 |
| NlaIV | GGNNCC | 1 cut(s) | 347 |
| NmuCI | GTSAC | 2 cut(s) | 142, 161 |
| NspI | RCATGY | 2 cut(s) | 307, 478 |
| PaeI | GCATGC | 1 cut(s) | 478 |
| PagI | TCATGA | 1 cut(s) | 33 |
| PciI | ACATGT | 1 cut(s) | 303 |
| PfeI | GAWTC | 1 cut(s) | 385 |
| PflFI | GACNNNGTC | 1 cut(s) | 454 |
| PkrI | GCNGC | 2 cut(s) | 196, 426 |
| PpuMI | RGGWCCY | 1 cut(s) | 345 |
| PscI | ACATGT | 1 cut(s) | 303 |
| Psp5II | RGGWCCY | 1 cut(s) | 345 |
| Psp6I | CCWGG | 1 cut(s) | 460 |
| PspEI | GGTNACC | 1 cut(s) | 161 |
| PspGI | CCWGG | 1 cut(s) | 460 |
| PspN4I | GGNNCC | 1 cut(s) | 347 |
| PspPI | GGNCC | 2 cut(s) | 345, 464 |
| PspPPI | RGGWCCY | 1 cut(s) | 345 |
| PstNI | CAGNNNCTG | 1 cut(s) | 467 |
| PsyI | GACNNNGTC | 1 cut(s) | 454 |
| SaqAI | TTAA | 1 cut(s) | 47 |
| SatI | GCNGC | 2 cut(s) | 195, 425 |
| Sau96I | GGNCC | 2 cut(s) | 345, 464 |
| ScrFI | CCNGG | 1 cut(s) | 462 |
| SduI | GDGCHC | 1 cut(s) | 403 |
| SetI | ASST | 7 cut(s) | 12, 121, 139, 144, 367, 395, 423 |
| SinI | GGWCC | 1 cut(s) | 345 |
| SphI | GCATGC | 1 cut(s) | 478 |
| Sse9I | AATT | 2 cut(s) | 26, 357 |
| SsiI | CCGC | 3 cut(s) | 166, 281, 424 |
| SspI | AATATT | 1 cut(s) | 407 |
| StyD4I | CCNGG | 1 cut(s) | 460 |
| StyI | CCWWGG | 1 cut(s) | 321 |
| TasI | AATT | 2 cut(s) | 26, 357 |
| TauI | GCSGC | 1 cut(s) | 427 |
| TfiI | GAWTC | 1 cut(s) | 385 |
| Tru1I | TTAA | 1 cut(s) | 47 |
| Tru9I | TTAA | 1 cut(s) | 47 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseFI | GTSAC | 2 cut(s) | 142, 161 |
| TseI | GCWGC | 1 cut(s) | 194 |
| Tsp45I | GTSAC | 2 cut(s) | 142, 161 |
| TspDTI | ATGAA | 3 cut(s) | 50, 54, 398 |
| TspRI | CASTG | 1 cut(s) | 316 |
| Tth111I | GACNNNGTC | 1 cut(s) | 454 |
| VpaK11BI | GGWCC | 1 cut(s) | 345 |
| XapI | RAATTY | 1 cut(s) | 26 |
| XceI | RCATGY | 2 cut(s) | 307, 478 |