ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 118, 301, 473 |
| AfaI | GTAC | 4 cut(s) | 292, 340, 353, 433 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 148, 373 |
| AflIII | ACRYGT | 2 cut(s) | 260, 496 |
| AgsI | TTSAA | 2 cut(s) | 449, 472 |
| AjnI | CCWGG | 2 cut(s) | 34, 527 |
| AleI | CACNNNNGTG | 2 cut(s) | 49, 142 |
| AoxI | GGCC | 1 cut(s) | 281 |
| ApeKI | GCWGC | 1 cut(s) | 421 |
| ApoI | RAATTY | 3 cut(s) | 118, 301, 473 |
| AspS9I | GGNCC | 5 cut(s) | 88, 94, 200, 281, 601 |
| AsuC2I | CCSGG | 1 cut(s) | 92 |
| AsuHPI | GGTGA | 1 cut(s) | 452 |
| AvaII | GGWCC | 4 cut(s) | 88, 94, 200, 601 |
| BbvI | GCAGC | 1 cut(s) | 408 |
| BccI | CCATC | 3 cut(s) | 191, 471, 503 |
| BciT130I | CCWGG | 2 cut(s) | 36, 529 |
| BcnI | CCSGG | 1 cut(s) | 92 |
| BfaI | CTAG | 2 cut(s) | 372, 393 |
| BfmI | CTRYAG | 1 cut(s) | 422 |
| BglII | AGATCT | 1 cut(s) | 171 |
| BisI | GCNGC | 1 cut(s) | 422 |
| BlsI | GCNGC | 1 cut(s) | 423 |
| Bme1390I | CCNGG | 3 cut(s) | 36, 92, 529 |
| Bme18I | GGWCC | 4 cut(s) | 88, 94, 200, 601 |
| BmgT120I | GGNCC | 5 cut(s) | 88, 94, 200, 281, 601 |
| BmiI | GGNNCC | 2 cut(s) | 89, 95 |
| BmrFI | CCNGG | 3 cut(s) | 36, 92, 529 |
| BmrI | ACTGGG | 1 cut(s) | 93 |
| BmsI | GCATC | 1 cut(s) | 13 |
| BmuI | ACTGGG | 1 cut(s) | 93 |
| BpmI | CTGGAG | 1 cut(s) | 57 |
| BpuMI | CCSGG | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 1 cut(s) | 143 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 148, 373 |
| Bse1I | ACTGG | 1 cut(s) | 88 |
| BseBI | CCWGG | 2 cut(s) | 36, 529 |
| BseDI | CCNNGG | 1 cut(s) | 143 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 148, 373 |
| BseMII | CTCAG | 1 cut(s) | 356 |
| BseNI | ACTGG | 1 cut(s) | 88 |
| BseXI | GCAGC | 1 cut(s) | 408 |
| BshFI | GGCC | 1 cut(s) | 283 |
| BsiSI | CCGG | 1 cut(s) | 91 |
| BslFI | GGGAC | 2 cut(s) | 101, 107 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 148, 373 |
| BsmFI | GGGAC | 2 cut(s) | 101, 107 |
| BsnI | GGCC | 1 cut(s) | 283 |
| Bsp1407I | TGTACA | 1 cut(s) | 431 |
| Bsp143I | GATC | 2 cut(s) | 171, 403 |
| BspANI | GGCC | 1 cut(s) | 283 |
| BspCNI | CTCAG | 1 cut(s) | 355 |
| BspLI | GGNNCC | 2 cut(s) | 89, 95 |
| BspMAI | CTGCAG | 1 cut(s) | 426 |
| BsrGI | TGTACA | 1 cut(s) | 431 |
| BsrI | ACTGG | 1 cut(s) | 88 |
| BssECI | CCNNGG | 1 cut(s) | 143 |
| BssMI | GATC | 2 cut(s) | 171, 403 |
| Bst2UI | CCWGG | 2 cut(s) | 36, 529 |
| Bst4CI | ACNGT | 2 cut(s) | 98, 605 |
| BstAUI | TGTACA | 1 cut(s) | 431 |
| BstC8I | GCNNGC | 1 cut(s) | 426 |
| BstDEI | CTNAG | 2 cut(s) | 342, 400 |
| BstDSI | CCRYGG | 1 cut(s) | 143 |
| BstKTI | GATC | 2 cut(s) | 174, 406 |
| BstMBI | GATC | 2 cut(s) | 171, 403 |
| BstNI | CCWGG | 2 cut(s) | 36, 529 |
| BstNSI | RCATGY | 1 cut(s) | 500 |
| BstSCI | CCNGG | 3 cut(s) | 34, 90, 527 |
| BstSFI | CTRYAG | 1 cut(s) | 422 |
| BstV1I | GCAGC | 1 cut(s) | 408 |
| BstX2I | RGATCY | 1 cut(s) | 171 |
| BstYI | RGATCY | 1 cut(s) | 171 |
| BsuRI | GGCC | 1 cut(s) | 283 |
| BtgI | CCRYGG | 1 cut(s) | 143 |
| BtsI | GCAGTG | 1 cut(s) | 190 |
| BtsIMutI | CAGTG | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 1 cut(s) | 426 |
| Cfr13I | GGNCC | 5 cut(s) | 88, 94, 200, 281, 601 |
| Csp6I | GTAC | 4 cut(s) | 291, 339, 352, 432 |
| CviAII | CATG | 7 cut(s) | 102, 348, 368, 407, 456, 497, 580 |
| CviJI | RGCY | 3 cut(s) | 283, 366, 527 |
| CviKI_1 | RGCY | 3 cut(s) | 283, 366, 527 |
| CviQI | GTAC | 4 cut(s) | 291, 339, 352, 432 |
| DdeI | CTNAG | 2 cut(s) | 342, 400 |
| DpnI | GATC | 2 cut(s) | 173, 405 |
| DpnII | GATC | 2 cut(s) | 171, 403 |
| Eco47I | GGWCC | 4 cut(s) | 88, 94, 200, 601 |
| EcoRI | GAATTC | 1 cut(s) | 301 |
| EcoRII | CCWGG | 2 cut(s) | 34, 527 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 585 |
| FaeI | CATG | 7 cut(s) | 105, 351, 371, 410, 459, 500, 583 |
| FaqI | GGGAC | 2 cut(s) | 101, 107 |
| FatI | CATG | 7 cut(s) | 101, 347, 367, 406, 455, 496, 579 |
| Fnu4HI | GCNGC | 1 cut(s) | 422 |
| Fsp4HI | GCNGC | 1 cut(s) | 422 |
| FspBI | CTAG | 2 cut(s) | 372, 393 |
| GluI | GCNGC | 1 cut(s) | 422 |
| GsuI | CTGGAG | 1 cut(s) | 57 |
| HaeIII | GGCC | 1 cut(s) | 283 |
| HapII | CCGG | 1 cut(s) | 91 |
| Hin1II | CATG | 7 cut(s) | 105, 351, 371, 410, 459, 500, 583 |
| HinfI | GANTC | 3 cut(s) | 63, 134, 382 |
| HpaII | CCGG | 1 cut(s) | 91 |
| HphI | GGTGA | 1 cut(s) | 452 |
| Hpy166II | GTNNAC | 3 cut(s) | 291, 339, 432 |
| Hpy188I | TCNGA | 2 cut(s) | 307, 381 |
| Hpy188III | TCNNGA | 2 cut(s) | 131, 521 |
| Hpy8I | GTNNAC | 3 cut(s) | 291, 339, 432 |
| HpyCH4III | ACNGT | 2 cut(s) | 98, 605 |
| HpyCH4IV | ACGT | 1 cut(s) | 260 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 77, 319, 424, 493, 583 |
| HpyF3I | CTNAG | 2 cut(s) | 342, 400 |
| HpySE526I | ACGT | 1 cut(s) | 260 |
| Hsp92II | CATG | 7 cut(s) | 105, 351, 371, 410, 459, 500, 583 |
| Kzo9I | GATC | 2 cut(s) | 171, 403 |
| LmnI | GCTCC | 1 cut(s) | 415 |
| Lsp1109I | GCAGC | 1 cut(s) | 408 |
| LweI | GCATC | 1 cut(s) | 13 |
| MaeI | CTAG | 2 cut(s) | 372, 393 |
| MaeII | ACGT | 1 cut(s) | 260 |
| MaeIII | GTNAC | 5 cut(s) | 111, 236, 458, 541, 565 |
| MalI | GATC | 2 cut(s) | 173, 405 |
| MboI | GATC | 2 cut(s) | 171, 403 |
| MboII | GAAGA | 2 cut(s) | 202, 377 |
| MflI | RGATCY | 1 cut(s) | 171 |
| MluCI | AATT | 6 cut(s) | 118, 204, 301, 435, 444, 473 |
| MnlI | CCTC | 3 cut(s) | 221, 399, 472 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 585 |
| MseI | TTAA | 3 cut(s) | 56, 165, 176 |
| MslI | CAYNNNNRTG | 2 cut(s) | 49, 142 |
| MspI | CCGG | 1 cut(s) | 91 |
| MspR9I | CCNGG | 3 cut(s) | 36, 92, 529 |
| MvaI | CCWGG | 2 cut(s) | 36, 529 |
| NciI | CCSGG | 1 cut(s) | 92 |
| NdeII | GATC | 2 cut(s) | 171, 403 |
| NlaIII | CATG | 7 cut(s) | 105, 351, 371, 410, 459, 500, 583 |
| NlaIV | GGNNCC | 2 cut(s) | 89, 95 |
| NmuCI | GTSAC | 2 cut(s) | 236, 458 |
| NsiI | ATGCAT | 2 cut(s) | 6, 585 |
| NspI | RCATGY | 1 cut(s) | 500 |
| OliI | CACNNNNGTG | 2 cut(s) | 49, 142 |
| PciI | ACATGT | 1 cut(s) | 496 |
| PfeI | GAWTC | 3 cut(s) | 63, 134, 382 |
| PfoI | TCCNGGA | 1 cut(s) | 34 |
| PkrI | GCNGC | 1 cut(s) | 423 |
| PscI | ACATGT | 1 cut(s) | 496 |
| Psp6I | CCWGG | 2 cut(s) | 34, 527 |
| PspGI | CCWGG | 2 cut(s) | 34, 527 |
| PspN4I | GGNNCC | 2 cut(s) | 89, 95 |
| PspPI | GGNCC | 5 cut(s) | 88, 94, 200, 281, 601 |
| PstI | CTGCAG | 1 cut(s) | 426 |
| PsuI | RGATCY | 1 cut(s) | 171 |
| RsaI | GTAC | 4 cut(s) | 292, 340, 353, 433 |
| RsaNI | GTAC | 4 cut(s) | 291, 339, 352, 432 |
| RseI | CAYNNNNRTG | 2 cut(s) | 49, 142 |
| SaqAI | TTAA | 3 cut(s) | 56, 165, 176 |
| SatI | GCNGC | 1 cut(s) | 422 |
| Sau3AI | GATC | 2 cut(s) | 171, 403 |
| Sau96I | GGNCC | 5 cut(s) | 88, 94, 200, 281, 601 |
| ScrFI | CCNGG | 3 cut(s) | 36, 92, 529 |
| SetI | ASST | 2 cut(s) | 263, 333 |
| SfaNI | GCATC | 1 cut(s) | 13 |
| SfcI | CTRYAG | 1 cut(s) | 422 |
| SinI | GGWCC | 4 cut(s) | 88, 94, 200, 601 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 49, 142 |
| Sse9I | AATT | 6 cut(s) | 118, 204, 301, 435, 444, 473 |
| SspMI | CTAG | 2 cut(s) | 372, 393 |
| StyD4I | CCNGG | 3 cut(s) | 34, 90, 527 |
| TaaI | ACNGT | 2 cut(s) | 98, 605 |
| TaiI | ACGT | 1 cut(s) | 263 |
| TaqI | TCGA | 1 cut(s) | 554 |
| TasI | AATT | 6 cut(s) | 118, 204, 301, 435, 444, 473 |
| TatI | WGTACW | 3 cut(s) | 290, 338, 431 |
| TfiI | GAWTC | 3 cut(s) | 63, 134, 382 |
| Tru1I | TTAA | 3 cut(s) | 56, 165, 176 |
| Tru9I | TTAA | 3 cut(s) | 56, 165, 176 |
| TscAI | CASTG | 1 cut(s) | 190 |
| TseFI | GTSAC | 2 cut(s) | 236, 458 |
| TseI | GCWGC | 1 cut(s) | 421 |
| Tsp45I | GTSAC | 2 cut(s) | 236, 458 |
| TspDTI | ATGAA | 1 cut(s) | 90 |
| TspGWI | ACGGA | 1 cut(s) | 130 |
| TspRI | CASTG | 1 cut(s) | 190 |
| VpaK11BI | GGWCC | 4 cut(s) | 88, 94, 200, 601 |
| XapI | RAATTY | 3 cut(s) | 118, 301, 473 |
| XceI | RCATGY | 1 cut(s) | 500 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 291 |
| XspI | CTAG | 2 cut(s) | 372, 393 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 585 |