Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 165, 258 |
| AciI | CCGC | 1 cut(s) | 197 |
| AclWI | GGATC | 1 cut(s) | 159 |
| AdeI | CACNNNGTG | 1 cut(s) | 293 |
| AfaI | GTAC | 1 cut(s) | 247 |
| AgsI | TTSAA | 2 cut(s) | 136, 533 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 1 cut(s) | 364 |
| AluI | AGCT | 1 cut(s) | 364 |
| Alw21I | GWGCWC | 1 cut(s) | 289 |
| Alw26I | GTCTC | 1 cut(s) | 256 |
| Alw44I | GTGCAC | 1 cut(s) | 285 |
| AlwI | GGATC | 1 cut(s) | 159 |
| ApaLI | GTGCAC | 1 cut(s) | 285 |
| ApeKI | GCWGC | 1 cut(s) | 361 |
| AspLEI | GCGC | 2 cut(s) | 166, 259 |
| AsuHPI | GGTGA | 3 cut(s) | 305, 415, 521 |
| AxyI | CCTNAGG | 1 cut(s) | 399 |
| BaeGI | GKGCMC | 1 cut(s) | 289 |
| Bbv12I | GWGCWC | 1 cut(s) | 289 |
| BbvCI | CCTCAGC | 1 cut(s) | 59 |
| BbvI | GCAGC | 1 cut(s) | 373 |
| BceAI | ACGGC | 1 cut(s) | 283 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 350, 384 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BclI | TGATCA | 1 cut(s) | 69 |
| BcoDI | GTCTC | 1 cut(s) | 256 |
| BfaI | CTAG | 2 cut(s) | 155, 524 |
| BisI | GCNGC | 1 cut(s) | 362 |
| BlsI | GCNGC | 1 cut(s) | 363 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmsI | GCATC | 2 cut(s) | 268, 484 |
| Bpu10I | CCTNAGC | 1 cut(s) | 59 |
| BsaBI | GATNNNNATC | 1 cut(s) | 231 |
| BsaJI | CCNNGG | 1 cut(s) | 299 |
| Bse21I | CCTNAGG | 1 cut(s) | 399 |
| Bse8I | GATNNNNATC | 1 cut(s) | 231 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseDI | CCNNGG | 1 cut(s) | 299 |
| BseGI | GGATG | 2 cut(s) | 10, 232 |
| BseJI | GATNNNNATC | 1 cut(s) | 231 |
| BseMII | CTCAG | 2 cut(s) | 50, 101 |
| BseSI | GKGCMC | 1 cut(s) | 289 |
| BseXI | GCAGC | 1 cut(s) | 373 |
| BsiHKAI | GWGCWC | 1 cut(s) | 289 |
| BsmAI | GTCTC | 1 cut(s) | 256 |
| Bsp1286I | GDGCHC | 1 cut(s) | 289 |
| Bsp143I | GATC | 6 cut(s) | 69, 151, 232, 343, 511, 520 |
| BspACI | CCGC | 1 cut(s) | 197 |
| BspCNI | CTCAG | 2 cut(s) | 51, 100 |
| BspPI | GGATC | 1 cut(s) | 159 |
| BssECI | CCNNGG | 1 cut(s) | 299 |
| BssMI | GATC | 6 cut(s) | 69, 151, 232, 343, 511, 520 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 1 cut(s) | 250 |
| Bst6I | CTCTTC | 1 cut(s) | 399 |
| BstDEI | CTNAG | 3 cut(s) | 59, 87, 399 |
| BstDSI | CCRYGG | 1 cut(s) | 299 |
| BstF5I | GGATG | 2 cut(s) | 10, 232 |
| BstHHI | GCGC | 2 cut(s) | 166, 259 |
| BstKTI | GATC | 6 cut(s) | 72, 154, 235, 346, 514, 523 |
| BstMAI | GTCTC | 1 cut(s) | 256 |
| BstMBI | GATC | 6 cut(s) | 69, 151, 232, 343, 511, 520 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstSLI | GKGCMC | 1 cut(s) | 289 |
| BstV1I | GCAGC | 1 cut(s) | 373 |
| BstX2I | RGATCY | 1 cut(s) | 151 |
| BstYI | RGATCY | 1 cut(s) | 151 |
| Bsu36I | CCTNAGG | 1 cut(s) | 399 |
| BtgI | CCRYGG | 1 cut(s) | 299 |
| BtsCI | GGATG | 2 cut(s) | 10, 232 |
| CfoI | GCGC | 2 cut(s) | 166, 259 |
| CsiI | ACCWGGT | 1 cut(s) | 289 |
| Csp6I | GTAC | 1 cut(s) | 246 |
| CviAII | CATG | 2 cut(s) | 239, 329 |
| CviJI | RGCY | 6 cut(s) | 85, 204, 298, 364, 380, 414 |
| CviKI_1 | RGCY | 6 cut(s) | 85, 204, 298, 364, 380, 414 |
| CviQI | GTAC | 1 cut(s) | 246 |
| DdeI | CTNAG | 3 cut(s) | 59, 87, 399 |
| DpnI | GATC | 6 cut(s) | 71, 153, 234, 345, 513, 522 |
| DpnII | GATC | 6 cut(s) | 69, 151, 232, 343, 511, 520 |
| DraIII | CACNNNGTG | 1 cut(s) | 293 |
| Eam1104I | CTCTTC | 1 cut(s) | 399 |
| EarI | CTCTTC | 1 cut(s) | 399 |
| Eco81I | CCTNAGG | 1 cut(s) | 399 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT22I | ATGCAT | 1 cut(s) | 499 |
| FaeI | CATG | 2 cut(s) | 242, 332 |
| FaiI | YATR | 5 cut(s) | 240, 324, 330, 431, 507 |
| FatI | CATG | 2 cut(s) | 238, 328 |
| FauI | CCCGC | 1 cut(s) | 190 |
| FbaI | TGATCA | 1 cut(s) | 69 |
| Fnu4HI | GCNGC | 1 cut(s) | 362 |
| FokI | GGATG | 2 cut(s) | 17, 239 |
| Fsp4HI | GCNGC | 1 cut(s) | 362 |
| FspBI | CTAG | 2 cut(s) | 155, 524 |
| FspI | TGCGCA | 2 cut(s) | 165, 258 |
| GlaI | GCGC | 2 cut(s) | 165, 258 |
| GluI | GCNGC | 1 cut(s) | 362 |
| HhaI | GCGC | 2 cut(s) | 166, 259 |
| Hin1II | CATG | 2 cut(s) | 242, 332 |
| Hin6I | GCGC | 2 cut(s) | 164, 257 |
| HinP1I | GCGC | 2 cut(s) | 164, 257 |
| HinfI | GANTC | 4 cut(s) | 30, 79, 353, 389 |
| HphI | GGTGA | 3 cut(s) | 305, 415, 521 |
| Hpy166II | GTNNAC | 1 cut(s) | 287 |
| Hpy188I | TCNGA | 1 cut(s) | 90 |
| Hpy188III | TCNNGA | 3 cut(s) | 217, 371, 524 |
| Hpy8I | GTNNAC | 1 cut(s) | 287 |
| HpyCH4III | ACNGT | 1 cut(s) | 250 |
| HpyCH4IV | ACGT | 1 cut(s) | 270 |
| HpyCH4V | TGCA | 8 cut(s) | 24, 36, 145, 238, 287, 332, 481, 497 |
| HpyF3I | CTNAG | 3 cut(s) | 59, 87, 399 |
| HpySE526I | ACGT | 1 cut(s) | 270 |
| Hsp92II | CATG | 2 cut(s) | 242, 332 |
| HspAI | GCGC | 2 cut(s) | 164, 257 |
| Ksp22I | TGATCA | 1 cut(s) | 69 |
| Kzo9I | GATC | 6 cut(s) | 69, 151, 232, 343, 511, 520 |
| LpnPI | CCDG | 7 cut(s) | 179, 202, 276, 300, 303, 324, 467 |
| Lsp1109I | GCAGC | 1 cut(s) | 373 |
| LweI | GCATC | 2 cut(s) | 268, 484 |
| MabI | ACCWGGT | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 155, 524 |
| MaeII | ACGT | 1 cut(s) | 270 |
| MalI | GATC | 6 cut(s) | 71, 153, 234, 345, 513, 522 |
| MboI | GATC | 6 cut(s) | 69, 151, 232, 343, 511, 520 |
| MboII | GAAGA | 2 cut(s) | 359, 386 |
| MflI | RGATCY | 1 cut(s) | 151 |
| MhlI | GDGCHC | 1 cut(s) | 289 |
| MluCI | AATT | 4 cut(s) | 19, 276, 426, 446 |
| MnlI | CCTC | 7 cut(s) | 54, 96, 120, 169, 194, 217, 446 |
| Mph1103I | ATGCAT | 1 cut(s) | 499 |
| MseI | TTAA | 1 cut(s) | 420 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| NdeII | GATC | 6 cut(s) | 69, 151, 232, 343, 511, 520 |
| NlaIII | CATG | 2 cut(s) | 242, 332 |
| NsbI | TGCGCA | 2 cut(s) | 165, 258 |
| NsiI | ATGCAT | 1 cut(s) | 499 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PfeI | GAWTC | 4 cut(s) | 30, 79, 353, 389 |
| PkrI | GCNGC | 1 cut(s) | 363 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PsuI | RGATCY | 1 cut(s) | 151 |
| RsaI | GTAC | 1 cut(s) | 247 |
| RsaNI | GTAC | 1 cut(s) | 246 |
| SaqAI | TTAA | 1 cut(s) | 420 |
| SatI | GCNGC | 1 cut(s) | 362 |
| Sau3AI | GATC | 6 cut(s) | 69, 151, 232, 343, 511, 520 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SduI | GDGCHC | 1 cut(s) | 289 |
| SetI | ASST | 6 cut(s) | 180, 273, 292, 366, 405, 538 |
| SexAI | ACCWGGT | 1 cut(s) | 289 |
| SfaNI | GCATC | 2 cut(s) | 268, 484 |
| Sse9I | AATT | 4 cut(s) | 19, 276, 426, 446 |
| SsiI | CCGC | 1 cut(s) | 197 |
| SspMI | CTAG | 2 cut(s) | 155, 524 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| TaaI | ACNGT | 1 cut(s) | 250 |
| TaiI | ACGT | 1 cut(s) | 273 |
| TasI | AATT | 4 cut(s) | 19, 276, 426, 446 |
| TfiI | GAWTC | 4 cut(s) | 30, 79, 353, 389 |
| Tru1I | TTAA | 1 cut(s) | 420 |
| Tru9I | TTAA | 1 cut(s) | 420 |
| TseI | GCWGC | 1 cut(s) | 361 |
| TspDTI | ATGAA | 2 cut(s) | 438, 446 |
| TspGWI | ACGGA | 2 cut(s) | 92, 479 |
| VneI | GTGCAC | 1 cut(s) | 285 |
| XbaI | TCTAGA | 1 cut(s) | 523 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XspI | CTAG | 2 cut(s) | 155, 524 |
| Zsp2I | ATGCAT | 1 cut(s) | 499 |