ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 330 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 656 |
| AccI | GTMKAC | 1 cut(s) | 463 |
| AciI | CCGC | 1 cut(s) | 47 |
| AclWI | GGATC | 4 cut(s) | 116, 129, 547, 1077 |
| AcsI | RAATTY | 5 cut(s) | 6, 429, 640, 911, 1082 |
| AcuI | CTGAAG | 2 cut(s) | 809, 1083 |
| AfaI | GTAC | 1 cut(s) | 279 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 402, 558, 656, 710 |
| AflIII | ACRYGT | 1 cut(s) | 851 |
| AgsI | TTSAA | 7 cut(s) | 61, 424, 600, 639, 646, 743, 911 |
| AjiI | CACGTC | 1 cut(s) | 360 |
| AjnI | CCWGG | 2 cut(s) | 14, 551 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 807, 839 |
| AluBI | AGCT | 4 cut(s) | 629, 985, 1013, 1100 |
| AluI | AGCT | 4 cut(s) | 629, 985, 1013, 1100 |
| Alw26I | GTCTC | 2 cut(s) | 101, 369 |
| AlwI | GGATC | 4 cut(s) | 116, 129, 547, 1077 |
| AoxI | GGCC | 3 cut(s) | 12, 725, 765 |
| ApeKI | GCWGC | 2 cut(s) | 44, 626 |
| ApoI | RAATTY | 5 cut(s) | 6, 429, 640, 911, 1082 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 100, 132 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 915 |
| AspLEI | GCGC | 2 cut(s) | 193, 502 |
| AsuC2I | CCSGG | 1 cut(s) | 188 |
| AsuHPI | GGTGA | 3 cut(s) | 299, 344, 541 |
| AsuNHI | GCTAGC | 1 cut(s) | 1009 |
| BaeGI | GKGCMC | 1 cut(s) | 333 |
| BamHI | GGATCC | 1 cut(s) | 121 |
| BanI | GGYRCC | 1 cut(s) | 330 |
| BbvCI | CCTCAGC | 1 cut(s) | 1014 |
| BbvI | GCAGC | 2 cut(s) | 31, 638 |
| BccI | CCATC | 4 cut(s) | 94, 218, 267, 995 |
| BceAI | ACGGC | 2 cut(s) | 9, 307 |
| BciT130I | CCWGG | 2 cut(s) | 16, 553 |
| BciVI | GTATCC | 1 cut(s) | 841 |
| BclI | TGATCA | 1 cut(s) | 805 |
| BcnI | CCSGG | 1 cut(s) | 188 |
| BcoDI | GTCTC | 2 cut(s) | 101, 369 |
| BfaI | CTAG | 2 cut(s) | 630, 1010 |
| BfuI | GTATCC | 1 cut(s) | 841 |
| BisI | GCNGC | 2 cut(s) | 45, 627 |
| BlsI | GCNGC | 2 cut(s) | 46, 628 |
| Bme1390I | CCNGG | 3 cut(s) | 16, 188, 553 |
| BmgBI | CACGTC | 1 cut(s) | 360 |
| BmiI | GGNNCC | 2 cut(s) | 123, 332 |
| BmrFI | CCNGG | 3 cut(s) | 16, 188, 553 |
| BmsI | GCATC | 3 cut(s) | 31, 237, 487 |
| BmtI | GCTAGC | 1 cut(s) | 1013 |
| BoxI | GACNNNNGTC | 1 cut(s) | 381 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 974, 1006 |
| BpmI | CTGGAG | 2 cut(s) | 574, 742 |
| Bpu10I | CCTNAGC | 2 cut(s) | 101, 1014 |
| BpuEI | CTTGAG | 1 cut(s) | 163 |
| BpuMI | CCSGG | 1 cut(s) | 188 |
| Bsa29I | ATCGAT | 3 cut(s) | 267, 522, 1108 |
| BsaAI | YACGTR | 1 cut(s) | 467 |
| BsaI | GGTCTC | 1 cut(s) | 369 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 401 |
| BsaWI | WCCGGW | 2 cut(s) | 197, 354 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 143, 173, 547, 577 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 402, 558, 656, 710 |
| BseBI | CCWGG | 2 cut(s) | 16, 553 |
| BseCI | ATCGAT | 3 cut(s) | 267, 522, 1108 |
| BseDI | CCNNGG | 2 cut(s) | 25, 401 |
| BseGI | GGATG | 4 cut(s) | 82, 86, 502, 1006 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 402, 558, 656, 710 |
| BseMII | CTCAG | 3 cut(s) | 92, 435, 1005 |
| BseRI | GAGGAG | 4 cut(s) | 359, 687, 690, 693 |
| BseSI | GKGCMC | 1 cut(s) | 333 |
| BseXI | GCAGC | 2 cut(s) | 31, 638 |
| BshFI | GGCC | 3 cut(s) | 14, 727, 767 |
| BshNI | GGYRCC | 1 cut(s) | 330 |
| BshVI | ATCGAT | 3 cut(s) | 267, 522, 1108 |
| BsiSI | CCGG | 3 cut(s) | 187, 198, 355 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 402, 558, 656, 710 |
| BsmAI | GTCTC | 2 cut(s) | 101, 369 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsnI | GGCC | 3 cut(s) | 14, 727, 767 |
| Bso31I | GGTCTC | 1 cut(s) | 369 |
| Bsp1286I | GDGCHC | 1 cut(s) | 333 |
| Bsp143I | GATC | 7 cut(s) | 121, 153, 519, 539, 661, 805, 1069 |
| Bsp19I | CCATGG | 1 cut(s) | 401 |
| BspACI | CCGC | 1 cut(s) | 47 |
| BspANI | GGCC | 3 cut(s) | 14, 727, 767 |
| BspCNI | CTCAG | 3 cut(s) | 93, 436, 1006 |
| BspDI | ATCGAT | 3 cut(s) | 267, 522, 1108 |
| BspHI | TCATGA | 1 cut(s) | 760 |
| BspLI | GGNNCC | 2 cut(s) | 123, 332 |
| BspOI | GCTAGC | 1 cut(s) | 1013 |
| BspPI | GGATC | 4 cut(s) | 116, 129, 547, 1077 |
| BspT107I | GGYRCC | 1 cut(s) | 330 |
| BspTNI | GGTCTC | 1 cut(s) | 369 |
| BssECI | CCNNGG | 2 cut(s) | 25, 401 |
| BssMI | GATC | 7 cut(s) | 121, 153, 519, 539, 661, 805, 1069 |
| BssNAI | GTATAC | 1 cut(s) | 464 |
| BssT1I | CCWWGG | 1 cut(s) | 401 |
| Bst1107I | GTATAC | 1 cut(s) | 464 |
| Bst2UI | CCWGG | 2 cut(s) | 16, 553 |
| Bst4CI | ACNGT | 2 cut(s) | 409, 489 |
| Bst6I | CTCTTC | 1 cut(s) | 942 |
| BstBAI | YACGTR | 1 cut(s) | 467 |
| BstC8I | GCNNGC | 3 cut(s) | 769, 1011, 1059 |
| BstDEI | CTNAG | 3 cut(s) | 101, 444, 1014 |
| BstDSI | CCRYGG | 2 cut(s) | 25, 401 |
| BstF5I | GGATG | 4 cut(s) | 82, 86, 502, 1006 |
| BstHHI | GCGC | 2 cut(s) | 193, 502 |
| BstKTI | GATC | 7 cut(s) | 124, 156, 522, 542, 664, 808, 1072 |
| BstMAI | GTCTC | 2 cut(s) | 101, 369 |
| BstMBI | GATC | 7 cut(s) | 121, 153, 519, 539, 661, 805, 1069 |
| BstNI | CCWGG | 2 cut(s) | 16, 553 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 381 |
| BstSCI | CCNGG | 3 cut(s) | 14, 186, 551 |
| BstSLI | GKGCMC | 1 cut(s) | 333 |
| BstSNI | TACGTA | 1 cut(s) | 467 |
| BstV1I | GCAGC | 2 cut(s) | 31, 638 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| BstZ17I | GTATAC | 1 cut(s) | 464 |
| Bsu15I | ATCGAT | 3 cut(s) | 267, 522, 1108 |
| BsuI | GTATCC | 1 cut(s) | 841 |
| BsuRI | GGCC | 3 cut(s) | 14, 727, 767 |
| BsuTUI | ATCGAT | 3 cut(s) | 267, 522, 1108 |
| BtgI | CCRYGG | 2 cut(s) | 25, 401 |
| BtrI | CACGTC | 1 cut(s) | 360 |
| BtsCI | GGATG | 4 cut(s) | 82, 86, 502, 1006 |
| Cac8I | GCNNGC | 3 cut(s) | 769, 1011, 1059 |
| CciI | TCATGA | 1 cut(s) | 760 |
| CfoI | GCGC | 2 cut(s) | 193, 502 |
| ClaI | ATCGAT | 3 cut(s) | 267, 522, 1108 |
| CseI | GACGC | 1 cut(s) | 746 |
| Csp6I | GTAC | 1 cut(s) | 278 |
| CviAII | CATG | 6 cut(s) | 306, 402, 606, 656, 761, 1022 |
| CviQI | GTAC | 1 cut(s) | 278 |
| DdeI | CTNAG | 3 cut(s) | 101, 444, 1014 |
| DpnI | GATC | 7 cut(s) | 123, 155, 521, 541, 663, 807, 1071 |
| DpnII | GATC | 7 cut(s) | 121, 153, 519, 539, 661, 805, 1069 |
| Eam1104I | CTCTTC | 1 cut(s) | 942 |
| EarI | CTCTTC | 1 cut(s) | 942 |
| Eco105I | TACGTA | 1 cut(s) | 467 |
| Eco130I | CCWWGG | 1 cut(s) | 401 |
| Eco147I | AGGCCT | 2 cut(s) | 727, 767 |
| Eco31I | GGTCTC | 1 cut(s) | 369 |
| Eco57I | CTGAAG | 2 cut(s) | 809, 1083 |
| EcoRI | GAATTC | 1 cut(s) | 911 |
| EcoRII | CCWGG | 2 cut(s) | 14, 551 |
| EcoT14I | CCWWGG | 1 cut(s) | 401 |
| ErhI | CCWWGG | 1 cut(s) | 401 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 6 cut(s) | 309, 405, 609, 659, 764, 1025 |
| FatI | CATG | 6 cut(s) | 305, 401, 605, 655, 760, 1021 |
| FbaI | TGATCA | 1 cut(s) | 805 |
| FblI | GTMKAC | 1 cut(s) | 463 |
| Fnu4HI | GCNGC | 2 cut(s) | 45, 627 |
| FokI | GGATG | 4 cut(s) | 69, 73, 509, 1013 |
| Fsp4HI | GCNGC | 2 cut(s) | 45, 627 |
| FspBI | CTAG | 2 cut(s) | 630, 1010 |
| GlaI | GCGC | 2 cut(s) | 192, 501 |
| GluI | GCNGC | 2 cut(s) | 45, 627 |
| GsuI | CTGGAG | 2 cut(s) | 574, 742 |
| HaeIII | GGCC | 3 cut(s) | 14, 727, 767 |
| HapII | CCGG | 3 cut(s) | 187, 198, 355 |
| HgaI | GACGC | 1 cut(s) | 746 |
| HhaI | GCGC | 2 cut(s) | 193, 502 |
| Hin1II | CATG | 6 cut(s) | 309, 405, 609, 659, 764, 1025 |
| Hin6I | GCGC | 2 cut(s) | 191, 500 |
| HinP1I | GCGC | 2 cut(s) | 191, 500 |
| HincII | GTYRAC | 1 cut(s) | 716 |
| HindII | GTYRAC | 1 cut(s) | 716 |
| HindIII | AAGCTT | 1 cut(s) | 1098 |
| HinfI | GANTC | 1 cut(s) | 556 |
| HpaII | CCGG | 3 cut(s) | 187, 198, 355 |
| HphI | GGTGA | 3 cut(s) | 299, 344, 541 |
| Hpy166II | GTNNAC | 3 cut(s) | 464, 716, 964 |
| Hpy188I | TCNGA | 5 cut(s) | 121, 346, 374, 445, 810 |
| Hpy188III | TCNNGA | 2 cut(s) | 100, 761 |
| Hpy8I | GTNNAC | 3 cut(s) | 464, 716, 964 |
| HpyAV | CCTTC | 5 cut(s) | 106, 442, 446, 926, 1058 |
| HpyCH4III | ACNGT | 2 cut(s) | 409, 489 |
| HpyCH4IV | ACGT | 6 cut(s) | 349, 359, 466, 666, 853, 892 |
| HpyCH4V | TGCA | 5 cut(s) | 52, 305, 484, 771, 944 |
| HpyF3I | CTNAG | 3 cut(s) | 101, 444, 1014 |
| HpySE526I | ACGT | 6 cut(s) | 349, 359, 466, 666, 853, 892 |
| Hsp92II | CATG | 6 cut(s) | 309, 405, 609, 659, 764, 1025 |
| HspAI | GCGC | 2 cut(s) | 191, 500 |
| Ksp22I | TGATCA | 1 cut(s) | 805 |
| Kzo9I | GATC | 7 cut(s) | 121, 153, 519, 539, 661, 805, 1069 |
| LmnI | GCTCC | 2 cut(s) | 372, 982 |
| Lsp1109I | GCAGC | 2 cut(s) | 31, 638 |
| LweI | GCATC | 3 cut(s) | 31, 237, 487 |
| MaeI | CTAG | 2 cut(s) | 630, 1010 |
| MaeII | ACGT | 6 cut(s) | 349, 359, 466, 666, 853, 892 |
| MaeIII | GTNAC | 3 cut(s) | 287, 350, 512 |
| MalI | GATC | 7 cut(s) | 123, 155, 521, 541, 663, 807, 1071 |
| MboI | GATC | 7 cut(s) | 121, 153, 519, 539, 661, 805, 1069 |
| MboII | GAAGA | 5 cut(s) | 73, 88, 432, 668, 929 |
| MfeI | CAATTG | 1 cut(s) | 166 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MhlI | GDGCHC | 1 cut(s) | 333 |
| MlyI | GAGTC | 1 cut(s) | 565 |
| MroXI | GAANNNNTTC | 1 cut(s) | 915 |
| MseI | TTAA | 1 cut(s) | 864 |
| MslI | CAYNNNNRTG | 3 cut(s) | 267, 269, 776 |
| MspI | CCGG | 3 cut(s) | 187, 198, 355 |
| MspR9I | CCNGG | 3 cut(s) | 16, 188, 553 |
| MunI | CAATTG | 1 cut(s) | 166 |
| MvaI | CCWGG | 2 cut(s) | 16, 553 |
| NciI | CCSGG | 1 cut(s) | 188 |
| NcoI | CCATGG | 1 cut(s) | 401 |
| NdeII | GATC | 7 cut(s) | 121, 153, 519, 539, 661, 805, 1069 |
| NheI | GCTAGC | 1 cut(s) | 1009 |
| NlaIII | CATG | 6 cut(s) | 309, 405, 609, 659, 764, 1025 |
| NlaIV | GGNNCC | 2 cut(s) | 123, 332 |
| NmuCI | GTSAC | 3 cut(s) | 287, 350, 512 |
| PagI | TCATGA | 1 cut(s) | 760 |
| PceI | AGGCCT | 2 cut(s) | 727, 767 |
| PdmI | GAANNNNTTC | 1 cut(s) | 915 |
| PflFI | GACNNNGTC | 1 cut(s) | 361 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 656 |
| PkrI | GCNGC | 2 cut(s) | 46, 628 |
| PleI | GAGTC | 1 cut(s) | 564 |
| PpsI | GAGTC | 1 cut(s) | 564 |
| Ppu21I | YACGTR | 1 cut(s) | 467 |
| PshAI | GACNNNNGTC | 1 cut(s) | 381 |
| Psp6I | CCWGG | 2 cut(s) | 14, 551 |
| PspGI | CCWGG | 2 cut(s) | 14, 551 |
| PspN4I | GGNNCC | 2 cut(s) | 123, 332 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| PsyI | GACNNNGTC | 1 cut(s) | 361 |
| RsaI | GTAC | 1 cut(s) | 279 |
| RsaNI | GTAC | 1 cut(s) | 278 |
| RseI | CAYNNNNRTG | 3 cut(s) | 267, 269, 776 |
| SaqAI | TTAA | 1 cut(s) | 864 |
| SatI | GCNGC | 2 cut(s) | 45, 627 |
| Sau3AI | GATC | 7 cut(s) | 121, 153, 519, 539, 661, 805, 1069 |
| SchI | GAGTC | 1 cut(s) | 565 |
| ScrFI | CCNGG | 3 cut(s) | 16, 188, 553 |
| SduI | GDGCHC | 1 cut(s) | 333 |
| SfaNI | GCATC | 3 cut(s) | 31, 237, 487 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 267, 269, 776 |
| SmlI | CTYRAG | 1 cut(s) | 142 |
| SmoI | CTYRAG | 1 cut(s) | 142 |
| SnaBI | TACGTA | 1 cut(s) | 467 |
| SseBI | AGGCCT | 2 cut(s) | 727, 767 |
| SsiI | CCGC | 1 cut(s) | 47 |
| SspI | AATATT | 1 cut(s) | 616 |
| SspMI | CTAG | 2 cut(s) | 630, 1010 |
| StuI | AGGCCT | 2 cut(s) | 727, 767 |
| StyD4I | CCNGG | 3 cut(s) | 14, 186, 551 |
| StyI | CCWWGG | 1 cut(s) | 401 |
| TaaI | ACNGT | 2 cut(s) | 409, 489 |
| TaiI | ACGT | 6 cut(s) | 352, 362, 469, 669, 856, 895 |
| TaqI | TCGA | 8 cut(s) | 231, 248, 254, 267, 522, 919, 1043, 1108 |
| Tru1I | TTAA | 1 cut(s) | 864 |
| Tru9I | TTAA | 1 cut(s) | 864 |
| TseFI | GTSAC | 3 cut(s) | 287, 350, 512 |
| TseI | GCWGC | 2 cut(s) | 44, 626 |
| Tsp45I | GTSAC | 3 cut(s) | 287, 350, 512 |
| TspDTI | ATGAA | 4 cut(s) | 62, 441, 644, 1079 |
| TspGWI | ACGGA | 1 cut(s) | 725 |
| Tth111I | GACNNNGTC | 1 cut(s) | 361 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 656 |
| XapI | RAATTY | 5 cut(s) | 6, 429, 640, 911, 1082 |
| XmiI | GTMKAC | 1 cut(s) | 463 |
| XmnI | GAANNNNTTC | 1 cut(s) | 915 |
| XspI | CTAG | 2 cut(s) | 630, 1010 |